RNA id: TU313332



Basic Information


Item Value
RNA id TU313332
length 502
RNA type TUCP
GC content 0.37
exon number 1
gene id G231113
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28645036 ~ 28645537 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


aaaattcatcaccttttacactcaacttctaacggttcacctttaaacgcagagtcgttagaaataaagactagtctcgacatatacttagactgcttttatcctatagaccttcaacaattaatgttaaagatatcctcagctaagccatctacctgtctcttggaccccatcccaacgagactactcaaagaagcattacctgtggttaacacctcattactagatatgatcaatatgtctctattaacaggttatgtaccacagtcatttaaagtagctgtgataaaacctcttctgaaaaaacccaccctggatcctgaggtcttagcaaactatagacctatatctaaccttccctttctatccaagatccttgagaaggtggttgctaatcagttatgtgattttctacatagcaatagtttatttgatgactttcaatcaggatttagaaagaatcatagcacagagacggcactggtgaaaattactaacgacc

Function


GO:      GO:0017137

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005638181.1 lncRNA upstream 28909 28607883 ~ 28616127 (+) True LOC120553529
TU313307 lncRNA upstream 28933 28607886 ~ 28616103 (+) False LOC120553529
TU313300 lncRNA upstream 59093 28585742 ~ 28585943 (+) True G231094
TU313267 lncRNA upstream 101082 28478535 ~ 28543954 (+) True G231067
TU313228 lncRNA upstream 192241 28415891 ~ 28452795 (+) True G231033
TU313341 lncRNA downstream 98534 28744071 ~ 28744338 (+) True G231122
TU313344 lncRNA downstream 100365 28745902 ~ 28746127 (+) True G231125
TU313348 lncRNA downstream 121784 28767321 ~ 28767630 (+) True G231129
TU313351 lncRNA downstream 125077 28770614 ~ 28771569 (+) True G231132
TU313354 lncRNA downstream 146423 28791960 ~ 28792745 (+) True G231135
XM_039792477.1 mRNA upstream 15024 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 351490 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 351490 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 351490 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 621418 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 445420 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 445445 29090982 ~ 29099400 (+) False LOC120553059
TU313309 other upstream 24171 28612555 ~ 28620865 (+) False LOC120553776
XR_005638238.1 other upstream 64434 28580487 ~ 28580602 (+) True LOC120553840
XR_005638234.1 other upstream 143617 28501234 ~ 28501419 (+) True LOC120553833
unassigned_transcript_1531 other upstream 173858 28471106 ~ 28471178 (+) True trnak-uuu_24
unassigned_transcript_1530 other upstream 174158 28470806 ~ 28470878 (+) True trnat-ugu_41
XR_005638249.1 other downstream 166315 28811852 ~ 28811952 (+) True LOC120553854
XR_005638247.1 other downstream 167788 28813325 ~ 28813435 (+) True LOC120553851
XR_005638248.1 other downstream 174408 28819945 ~ 28820054 (+) True LOC120553852
XR_005638246.1 other downstream 175838 28821375 ~ 28821482 (+) True LOC120553849
XR_005638217.1 other downstream 176999 28822536 ~ 28822700 (+) True LOC120553815

Expression Profile