RNA id: TU313341


Basic Information

Item Value
RNA id TU313341
length 268
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G231122
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28744071 ~ 28744338 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcccctcctgtgTCTTCAACCACTGCATATGCTGCTTTCAGTCCCTCAGTCTCATGTCTAAAACAACACCCATCTGTGAATAGCACTCTTCCTTCCCCTAGTGGTTGTGCAGCTAAGTCTGGTCtgactttttccacttttcttgTCCTGTCCTCACACTCATGTGGTTCCCCCTCCCCCATCTGGTCTGCCATGTTAATGCCTTCATGTGTAAAGGTCAGGTTTGGGGCCTGCAAAACTTTGCTGATTCGCCTTTGTCTGGTTGGT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638181.1 lncRNA upstream 127944 28607883 ~ 28616127 (+) True LOC120553529
TU313307 lncRNA upstream 127968 28607886 ~ 28616103 (+) False LOC120553529
TU313300 lncRNA upstream 158128 28585742 ~ 28585943 (+) True G231094
TU313267 lncRNA upstream 200117 28478535 ~ 28543954 (+) True G231067
TU313228 lncRNA upstream 291276 28415891 ~ 28452795 (+) True G231033
TU313344 lncRNA downstream 1564 28745902 ~ 28746127 (+) True G231125
TU313348 lncRNA downstream 22983 28767321 ~ 28767630 (+) True G231129
TU313351 lncRNA downstream 26276 28770614 ~ 28771569 (+) True G231132
TU313354 lncRNA downstream 47622 28791960 ~ 28792745 (+) True G231135
XR_005638111.1 lncRNA downstream 132125 28876463 ~ 28877100 (+) True LOC120553132
XM_039792477.1 mRNA upstream 114059 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 450525 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 450525 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 450525 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 720453 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 346619 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 346644 29090982 ~ 29099400 (+) False LOC120553059
TU313332 other upstream 98534 28645036 ~ 28645537 (+) True G231113
TU313309 other upstream 123206 28612555 ~ 28620865 (+) False LOC120553776
XR_005638238.1 other upstream 163469 28580487 ~ 28580602 (+) True LOC120553840
XR_005638234.1 other upstream 242652 28501234 ~ 28501419 (+) True LOC120553833
unassigned_transcript_1531 other upstream 272893 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638249.1 other downstream 67514 28811852 ~ 28811952 (+) True LOC120553854
XR_005638247.1 other downstream 68987 28813325 ~ 28813435 (+) True LOC120553851
XR_005638248.1 other downstream 75607 28819945 ~ 28820054 (+) True LOC120553852
XR_005638246.1 other downstream 77037 28821375 ~ 28821482 (+) True LOC120553849
XR_005638217.1 other downstream 78198 28822536 ~ 28822700 (+) True LOC120553815

Expression Profile