RNA id: XM_039791001.1


Basic Information

Item Value
RNA id XM_039791001.1
length 3206
RNA type mRNA
GC content 0.53
exon number 18
gene id mcm10
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20394066 ~ 20409676 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTCGCTCTCAATGCTCGCTCTCTATGCTCGCTCCGAGTGCAGGTTGTAAAGACTAGCTACAAGATTAATATCTCGATTTTTATCAAATATAACCCATGACTTGTACATAACTACGCGCAGTGCTAATTATTGGGGAACAAACAACACATTGACAGGTTGGAAGTAGTTGAAAAATCCATCAAATTTGTATTAGAGCTAGCAAAGGACACAAAGCTGTAACATTACCGTCAAGCTCTAGAACCAGAGGTCACCAGTTCATCTAAAATCAGTACCAACATTCACATCTCTAAAATGGAAAGTGAGGATGATCTGGACATTCTGACGGCGCTGCTGGCTGAGAGCGAGGGAGTCGGAGAAGAGCAGGGCGGTCAGGAGCAGGCAGACGACTTGGACGGCCTGTTTGATGCCGACAATGACGAGGAAGAAGAGTACAAAGAGGGCGTCGAGGAGGAAGGGCGAGATGTGTCGGATCTCTTTGGAGATGTGGAAGACattgaaaatgaagagaaagacactaaaagaaaagaaagtggtGGAGAAGCCTGCGAGAGCCTGGACAGGTCAAAGGAGGATTTACAAGATGAGCTGAGGCGCATGCAGGAGCAAATGCAGCggttgcagcagcagctggaagCAAGCCAGAAGGTTTCCACCTCATCTTCCCCTCCGGTCACGGCTGCAGGGAGCACGGCTCGTCCAAAACCAGTCACTCCCAAACCGACACGCACTCCACAGCCGACCGCCAAACTGGCCCAGGCCAAACCCACCTCTACCACACCGAAGACCAAGGCACAATCAGCAACATCTTCACCCGCTccagtcagaggaggagatCTGAAGCTCCAGGAGTCCTCTGACTTTTTTGATCAGCTGAACAATGCTGACTCCTTCAAACGTAAACCCCGGCTAGCTCATCATCCCAAACCAAGCACGTCGCCAGAAGACAGAGGGCCGCTGGTGGAGATAAAGCTTGGCAGCTCCTTCCAGCCAGTAGAGAGCACCAGCCAAGCTTTCAATCCTGTGCGTTCACCTCCAGCCTCTCAGAGCAAACCTGCATTGGCTGCATCAGCAGGACAGCCCAaaccttctcctcttcctccccttccTAAAGATGTGGGGGTTGAGAAATACTCAGGACTGCGGCTCAGAAAACCGCGCGTTTCCTCCAGCGAGATGGACCGCAAGATGGCCGACCGCCGTCTAATCCGTCTGTCCCAGGTACCGGAGCGCGCGGCTCGAGAGAAGCTGGAGGATAGCGATTGGGTGACTTTCGCTGTGCTGGTCAACAAAGTCACTCAacaaagcagcagcagtGGCAAAACCTTCAGCATCTGGAAACTGAACGACCTCCATAACCTGGaagtgtttgtgtctctgctcCTGTTCGGCGAAGTTCACAAAGAGCACTGGAAAACGGAGACGGGCACCGTCATCGGACTCCTCAACCCAAACCTCATGAAGCAGAAAGAAGGATATGACGGGGTGAGCCTGACGGTGGACAACCCCCAGAAGGTGTTGCTGATGGGCGAGGCTCAGGACTACAGCAACTGCAAGGGCATGAAGAAGAACGGAGACCCCTGCTCTCAGATCGTCAACATGTTCGAGTGCCAGTACTGTCAGTATCACGTCAAGGCCCAGTATAAGCAGATGAGCTCCAAGAGGTCCGAGCTGCAGTCGGCTTTTTCTGGAAAAGCTCCGAACAGGTTGAAGGGGAAGGGCGGCAGCCTGAAGGAGCGTTTGTGTCAGGACGGCTTCCACTACGGCGGTGTGTCCTCGGCCGCCTGCGCCGCCTCACTAACGGCGTCCAAACCGAACAAACCCGGCCAGACGACTCTGAGCAAGCTGTTTGTGAAAGGCTCGGCTCAGCTCGCGGATCAGGCCAAGAGGCTGGccCTGAAGTCCGGTGAAGTTTCAGGTTGTACGAATGAATTTAAGAGCCTGCTGTCGGCGCCGACCCCCGGAGCTCTGCAGCTGAAGAAGCACTTGGCGCAGGGCAGCCAATCAGTCTCCAAAGATGCAGGGGGAGCTCCAGTTCAGTCCATCTCAGCCTCAGACCTGCTGAAGCAGCAGAAACAGAAGCAGCGGGAGTTTCTGCAGAACCGGCGGCGGCGGGCAGACGAGATCCAGAAGAGGGTGCTGCATAGCCCAGCGGGGCCCAGACCCGGGTCTACGTCCTCACTGGGCCGAGATGGTCTGATGTCCCCGAAAGCAGCTTCTGAGGTCCCCAAGGCCACCCAAAGCCCCGCAGCTCCCCGCGCTCCCACCCTGGGCCGAGGCTTCTCTGAGGGGGAGGACATCCTCTTCTTTGAGAACAGCCCGCCTCCGGTGCCCGCCCCCAGCGCTCTCAGCCTATCAGCCGCCAAGCTGGCTGCTCTGAAGAAGCTGAGAAACAAAGGGGCGGGGCTTGAAAAGGAAGACCCCAACGCtgtgaagaggaagaggagtaacGGCAATGAGATCAGCACCCGAGTGGAGAAGAATCTGACCTCACCCAATGGTGAATCGTCCAGTAATGAGGAAGAGGAGCCGGCCCTGAAGAAGAAGCGAGAGCAGCTCCTCTACATCCAGTCGGAGGAATTTCAAAAGATCCTCAACGCCAAATCTCGCCACGGAGCTGCACTACAGGCGGCGGAGTACCAGCTGCAGGAGAAGTACTTTGATCCACTGGTGAAGAAGGAGCAGATGGAGGAGAAGATGAAGGGCATCAGAGAGATGAAGTGTCGTGCTGTATCCTGTAAAAAGTGCGGTTACACCTACTTCAAGCCGGCAGATCGTTGTGTGGAGGAGAACCATAACCTGCGGTGGCACGATGCCCTGAAACGCTTCTTCAAATGCCCCTGTGGACAGAGAGCCATCGCTCTGGACAGACTGCCAAACAAACACTGCAGTAACTGTGGTCTGTTTAAATGGGAGCGTGATGGGATGCTGAAGgaGAAAAAGGGACCAAAGATCGCCGGAGAGCTTCTGCAGCCTCGAGGAGAGGAGCACGGCAAGTTCCTCAACAGCACGAAGTGAATGCACcaggattcatttttttttttgtttataattTTTGTAATTTAAGTGTCTTTGTAgcatttttacatttgtatgAATAATGTTTTTAAAGTCTGATGTTGTGTAATTGATTATGGAGATTTGAAAGTCTTTGATTATATTGGATATGGAAAGAAGATGATTAAAGCAATAATTTGCAACATTTTA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310777 lncRNA downstream 2558 20382465 ~ 20391508 (-) True G229071
TU310764 lncRNA downstream 36503 20355636 ~ 20357563 (-) True G229062
TU310720 lncRNA downstream 92628 20301102 ~ 20301438 (-) False cdk17
TU310618 lncRNA downstream 488123 19852964 ~ 19905943 (-) True G228946
TU310623 lncRNA downstream 511987 19877097 ~ 19882079 (-) True G228947
TU310783 lncRNA upstream 24479 20434155 ~ 20437536 (-) True G229076
TU310788 lncRNA upstream 32644 20442320 ~ 20450128 (-) False G229079
TU310789 lncRNA upstream 32644 20442320 ~ 20450128 (-) True G229079
TU310808 lncRNA upstream 125609 20535285 ~ 20535597 (-) True G229095
TU310809 lncRNA upstream 126897 20536573 ~ 20536801 (-) True G229096
XM_039791217.1 mRNA downstream 39439 20301092 ~ 20354627 (-) True cdk17
XM_039791213.1 mRNA downstream 107479 20272526 ~ 20286587 (-) True hcfc2
XM_039791214.1 mRNA downstream 107480 20272526 ~ 20286586 (-) False hcfc2
XM_039791787.1 mRNA downstream 121922 20261404 ~ 20272144 (-) False cep83
XM_039791786.1 mRNA downstream 121929 20260025 ~ 20272137 (-) True cep83
XM_039792012.1 mRNA upstream 519 20410195 ~ 20430496 (-) False optn
XM_039792011.1 mRNA upstream 519 20410195 ~ 20420877 (-) True optn
XM_039791833.1 mRNA upstream 45999 20455675 ~ 20530744 (-) True camk1da
XM_039791147.1 mRNA upstream 127380 20537056 ~ 20544945 (-) True LOC120553073
XM_039792468.1 mRNA upstream 140358 20550034 ~ 20564985 (-) True cdc123
TU310704 other downstream 271727 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 554764 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 554764 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 586968 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 941038 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 547981 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 654015 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1361412 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1361460 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2695084 23104760 ~ 23239573 (-) True G229716

Expression Profile