RNA id: XM_039791007.1


Basic Information

Item Value
RNA id XM_039791007.1
length 1260
RNA type mRNA
GC content 0.51
exon number 10
gene id pax4
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11453460 ~ 11456592 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGCGGAACAAACGATCAGCCAAATAAAGGTTGTGGAAGTGTCAACCAGCTAGGAGGGATGTTTCTCAACGGCAGACCTCTCCCGGAATCCAAGAGGAGGAAAATGATTGAACTGGCCTCGGAGGGAGTCCGTCCGAGCCAGATCTCCAGGATACTTCGGGTGTCCAACGGGTGCGTCAGTAAGATCCTGAGCCGCTACCGCCGCACTGGACTCCTGGAGCCCAAGACCATTGGAGGGAGCCGACCTCGGCTTCTCACCCCCGGTGTCATCACCTCGATCATCCAGtgcaaaagggaaaatccaACCATTTTTGCTTGGGAAATTCGAAAACGGCTTGCAACAGCACGAATATGCAAAGCCTCCAAAATTCCCAGCGTGTCGTCTATAAATCGGATTGTAAGAAAGATCCATTTGGACCACGGAGCGATGTGCATGGAGATCAATGCGCACATCAGGGCTGAGCAGGatTCGGATTCCCTGATCGAAGAAGAAGTGATTGAGAGAAAGATGTCTGAGACAGTACGCAGCAATGACCAGAAGCCTAAAGCTGTCCAGCAGCGGAACCGCACCACCTTCACCCCGGAGCAGAGCACAGCACTCGAGCAAGAGTTCTCTCACAGCCAGTATGCAGATATGTACACGAGAGAGAAACTGTCCGCTGAGATCCAACTTCCCGAGGACACCATCAAGGTCTGGTTTTCAAACAGACGGGCTAAATGGAGGAGGGAAGCCAAACACAGGAGCAGTACAaagaACCTTCAACAACAAAGAGATTTCGTTCCTGTGAATCCAACAATACCACATGGCTTCACATCTCAAcagGCAACAGGAGTGTCAAGGGTCTACTGTGAAAATTCAGAGGCCCCCCCTACCTACAACACTGTTGCTAGGACGTTGCAAAATGGCTACTTTTTCCCAGCAGAAAGAGGTTTGACAAATTCTGGACATCTGACATCCATCTCAGTCCCACCCTCACTCATCCATCAGTCTAATAACATGATGGCCCAGACCATGGCAGACAAGACTCCACTGGATCTCCACAGAGATAATAGATTCACTTTCCCATTGGTTCACCATCACACAGACGCAAGGACATCCCTCCCTTTGGCAACTGAGACAGTAAGAGCAGACCACCCTGTGGCACAGTGCTGGAACCAGCAGGGGATTTCTTTTACATGGAGCCCGTTTCAAACAGATGAGAGGTTGTTATTCGTACAGCAGCCCTGGGATGTGAACCCACATGGCTACCTGGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308216 lncRNA upstream 265678 11186939 ~ 11187782 (+) True G227221
TU308210 lncRNA upstream 340555 11102836 ~ 11112905 (+) True G227216
TU308211 lncRNA upstream 340555 11102836 ~ 11112905 (+) False G227216
XR_005638092.1 lncRNA upstream 360786 11092190 ~ 11092674 (+) True LOC120553063
TU308212 lncRNA upstream 399265 11043412 ~ 11054195 (+) True G227217
TU308248 lncRNA downstream 3521 11460113 ~ 11460500 (+) True G227251
TU308264 lncRNA downstream 167643 11624235 ~ 11627943 (+) True G227267
TU308377 lncRNA downstream 533508 11990100 ~ 11992952 (+) True G227338
TU308405 lncRNA downstream 786942 12243534 ~ 12243755 (+) True G227363
TU308581 lncRNA downstream 1390222 12846814 ~ 12910140 (+) False plxna4
XM_039791244.1 mRNA upstream 85505 11362763 ~ 11367955 (+) True lrrc4.1
XM_039791047.1 mRNA upstream 429702 11019226 ~ 11023758 (+) True LOC120553009
XM_039791062.1 mRNA upstream 467259 10951264 ~ 10986201 (+) False impdh1b
XM_039792456.1 mRNA downstream 355435 11812027 ~ 11822653 (+) True LOC120553760
XM_039792457.1 mRNA downstream 358521 11815113 ~ 11822653 (+) True LOC120553761
XM_039791458.1 mRNA downstream 369717 11826309 ~ 11836976 (+) True LOC120553244
XM_039791459.1 mRNA downstream 369719 11826311 ~ 11836525 (+) False LOC120553244
XM_039791457.1 mRNA downstream 396088 11852680 ~ 11864699 (+) True mettl25
TU308205 other upstream 340555 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 340555 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 467259 10948285 ~ 10986201 (+) False impdh1b
TU308097 other upstream 715957 10732069 ~ 10737503 (+) True G227141
TU308063 other upstream 753742 10697254 ~ 10699718 (+) True G227121
TU308276 other downstream 232577 11689169 ~ 11757317 (+) True G227278
TU308397 other downstream 664280 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 1548747 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 2018553 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 2218232 13674824 ~ 13685881 (+) False LOC120553473

Expression Profile