RNA id: XM_039791037.1


Basic Information

Item Value
RNA id XM_039791037.1
length 4286
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC120552999
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28016843 ~ 28023618 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATATTAGAATGAAACTGACAGATAATTGTTAACGCTTTAAGTTGTGTTCTATTGAAAGGATCTAGCTACAGGCTAACCAGAGCTCGACTCGGCGGAAGCATAAATATTGCAGCGCGGAAGGATACATGAGTGAATCAACAGTGATCCAACTGTCAGTCTCTGTCAGTATCGATCAAAGTCGGGAGGATGGCGCTTGGGCATTTATCCACGGAGGATTTAATCACAGAGTTACTTCGTTTTGGAGTAGAGGTCACTGAAGAGGAGAGAAGTAAATTCAAAGATAATGAAGTTGACGGAGAAGCAGTGGACTATGGATTGACTGAGAGGATGGTTTCATACCTCTTTGAAGGATCATTTAAGAAGCAACCCAAATTCAACCGATTTGTTCAGCAGTGGAAAGAAACCGTGACACTAACCCTTGAGCCTGTCCCGGTACATTCAGAGAAGGCTACAGCGGAATCAAGTCATGCCATCCCATCATCAGCCTTCCCAGCAGTTTTCATCATTCCTAAATTTCCCAGAGATGTTCAGACAAAGTTGGACCAAAAACCGCCATGCAAAATTGAGAGATCCGATCACAACAAAATCATAAGAACATTGTATGAAACCATGGCCCTGATCAAAATGTTTCCGACCAATGATGACTATGTGAAAGTGTGCAAGGCCCTGATTTTGAAGTACCCTTTCTTAAAGGACAAAGAAGGCAATGGTTATCATACCTGGCACATGTCTCTCAAACGTAAGTTCAAATATGAGCGGGTGCCACTGATAGATGATGAGGAGGTGAGAAGAATGAAACTGAAATTTGGTCATCACAAAAAGCCTTTGCAACATgaagaaaacacaagcaaacgAGCCAAGACATCAAAGGAGGTGGATATTATTGGGGAGGATGATACCTCAGTAGCGAGCCATGTGAAAGTCCTGCAGGACCAGTACCGGAAGACACAGCCAGATGCCCGAATGGTGGAGGAACGGATGATGAGGACATTCGCTTGGAGAAGGCGATAGATCGCCAATGGGATGACTGTCGAAGAAGCCATTAACAAATATCCATTCCTTAAAAGTCCATGCGGGCTATTTCAGGAAATGGGCCGGCTTCATGATGAAATGAATATCTGCCGAAGATTTGAAGATGGCTTTAAGATCCTAGTACCCACAGTGCTTAGATTGACTCAAAGGAAATCTCCCCTTGCAGATCTGGCTTTGGAGGAAAGAGAGGCTGCCCTCACCGAAGATGTCCCTGGGATTGATTTCAGAGCTGCAATCCTGCTGTTGCCGATCCTGTTCAGGGAGAAAAATGACATTCTCGTCACACTTGGGgagGATCAGCCACCATCGCCATATCCTACTGTACAACTCGACGCTGTCGCTGACTGGAGGACTGTGCTCACTCGAAGGGTCCCTGCAGTGGTCAAACTGGATGGGCAGTCAGTCTGCAGGGCGCTTGGTTTGGAGGAAGGTGTTATTGCTACTTTTTGTGCTTACTTCATCTACAACGTGGTATATCCATCTCGCCTGAAGAACACCCTGATTTTCATTCAGCGATATGTTCTAAAAACGTCTGAGGTTGGTGACAAGCCTCTACCTGTTAGTGTGACCAGGGTAATCAACATTTTAGCTTGATCAATAACAGCATTGCGTACACCATTCAGCTGTCCTAAATGCTCTCGAAGAGCCTTCACATTGGTGAAGTTAATCCAGCACATCGGACTTGTTCATGCACATGAGCCACATTTTACCATAACGTGTGACCTTAACAACTGTCaatcaacattttctaaataTGAGTCCTTCCGACGACATATTTACAGGAAGCATAAAGACATTATAGCCAGACGAGCCACTGCTCATGATATACAGGAAACAGTAGTGGGCGAGGAGGAGCAGGGGCCCAGTGATCCTGAACCTCCGGAGATGAATGAACTGTTCAGTGCAGTTTAGAGAGAATCTTTTTGGGTTTATTCTGAAATCGAGGGAATAAAACCACCTTCCTCAGACTGTTCAACAAGAAATACTGGATGACGTAAATTTTTTGTTTGACTTCTTTAAAGCAAACTATTATGCATTTCTAAAATATCATCTTGAAAAAATGGCTTCAATGTGGAATCTTGTCCTGAACTTTATGAAGTTCTGCAGCgctctgactttttttcagagGCATCAAAACTTGTTAGGTCTCCGCATATGTTGAAAAACTACTGCAAATCCAACCTTGAAATGACTGAACCTGTAGACTACGCACTGAGAGACCCAAGTGGTCGTAAAGTTGGAAGCTACTCTTATGTAGCCATTTGTGATGTACTTCAGAAATACTGCTCTCGTGAAGATGTTTGGGATTCTATGCAGAGAGAGCGAAACTGTGAAAGAGATGTACATGTTCTAACTGATTATAGAGATGGATTTTATTTCAGGGACCACAAGGTATTTGCAGATAATCCAGATGCTCTAAGGTTACACCTATATGAGGATGAATTTGAGGTGTGTAATCCACTGGGTTCTAAACGTAACAAGCACAAACTTTGTGCATTTTACTACACTGTTGGAAACGTAGGTTCAAAGTACTGCTCACAGCTAAAACATATCCATCTAGCTTTGCTTGTCCGTTACGTTCATGTCAAAAAGTTTGGTCTAGATGTAATTTTGAAACCATTACTGGATGACCTTAAGAAACTGTCATCAGAGGGACTAACTATCATTGTTAATGGCATGGAGAAGCATGTTTTTGGAGCTGTAGCTGCAATATTGGGAGACAATCTGTCATCTCACATGATAGGTGGATTTACCATGTCTTTTGGTGCTGGTCGAATCTGTAGATACTGAATGGCTACTCACTCTGAGATGAGAAAGAACTTCAGTGAATCAGATTTTGTTTTAAGAAATGTTGATGTACACAGATACCATTTAGAATGTGTAAAACAAAATCCAGCAAACAGAGGAATGTATGGAGTTCGTGGTGGATGTGTATTTGACCAGTTAGATTACTTTGACGTCACAACATCGCTTCCTCCAGATGTCATGCATGATTTCTTGGAGGGTGTAGCACCGTTGGTATTGAGGCTTGTTGTATGTAAAGCTCATCAAGAAAAACATAACCATACAAGAACTAAATGAGGAACTAAGAAAGATTTCTATTGGACAAAATGATAGGACAAATAAGCCTGTACCTTTCTCAGAAAATATTTTACATGGATCCAGTGTTGTTGGATCTGCTTCACAGAAGTGGTGTTTATTCCGCCTACTTCCCTTCTTGATGGCACACAGGGTACCTGAAGGCTGCAGTTACTGGCAGATCTATTTATTGTGTCGTGAAATTGCAGACATTGTAATGGCACCGGTTGTTAAAAAAgagtctcttcctcttcttgaCCAATTAATTTCTGAGTTTTTGTGTGGTATGGAAAAAGAGTTTGGAAATGTGATAACTCCGAAATGTCATTACTTGATCCATTATTCTCATCTAATGTCCTACGGTCCTTTACGGTCTTTGTGGTGCATGAGATTTGAAGGGAAACATCAGTATTTCAAACAGGTAGCTAGTTCCTCAAGGAACTTTGTTAATGTTACATCAACTTTAAGCAGCCGCCATCAGTTTAGACAGTGTTGGGAATTTTCCTCAACTAATATGTTTGGAGAGTATGAGAGGGTTATGGGACGCAGTGTTAACACACTGTTACAGTCTCTTCCTTCAGCTCTTAGGCATTCCATAACTGTTAGTGAGCGGTACAAACATGTCAATTTTCAGGACATTACACTCAACCGAGTAACAGAGGTTGTGATTAACAGTGTTAAATACTTTGTGGGAGATGTCTTTGTTGTGGGTCATTTGCACTGTGAAAAaatacctttttgttttttcaggtCAAATATATtctaaacatacacacagattgGGCGTTATGTGGAAAACTATTAATTTCTCTTTCTGTCATGACTATTACACCTACTTGGTGAAATATGAACAGGACTGGACTGTACTTGACCCTTTCGAGGTGATGGATTTTCATGCTTTGGATACATATTGTGTCGATGATAAACTGTTAGTATGCGGCATTTATGTTAAGCTGTGTTGGAAGGGTTGTAGAGCGTTGTGGATGAGCTCAAAGCTTGTTTTTTAATCCAGAACACCTCAAGCGACATGTAGTTTATCCTTTAAGTTACTcatgatttattgtttttataatgtATTTTACTTTGGTGTGGTGTGCTAAAGTGTTTTGCTTGGTGTTTGATAAAATACTATTATGTTTTTCTGCACTATAGTGTTGTTCTTATTACAGttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313139 lncRNA upstream 19687 27996895 ~ 27997156 (+) True G230949
TU313138 lncRNA upstream 29382 27987139 ~ 27987461 (+) True G230948
TU313085 lncRNA upstream 39972 27976454 ~ 27976871 (+) True G230902
TU313091 lncRNA upstream 40634 27974851 ~ 27976209 (+) True G230908
TU313084 lncRNA upstream 42258 27973301 ~ 27974585 (+) True G230901
TU313177 lncRNA downstream 63877 28087495 ~ 28088216 (+) True G230983
TU313179 lncRNA downstream 64743 28088361 ~ 28088896 (+) True G230985
TU313181 lncRNA downstream 80058 28103676 ~ 28103919 (+) True G230987
TU313183 lncRNA downstream 81423 28105041 ~ 28105247 (+) True G230989
TU313185 lncRNA downstream 91569 28115187 ~ 28115436 (+) True G230991
XM_039791439.1 mRNA upstream 57445 27849737 ~ 27959398 (+) True LOC120553234
XM_039791441.1 mRNA upstream 57445 27866663 ~ 27959398 (+) False LOC120553234
XM_039791440.1 mRNA upstream 57445 27913712 ~ 27959398 (+) False LOC120553234
XM_039791033.1 mRNA upstream 320126 27695624 ~ 27696717 (+) True kiss2
XM_039791032.1 mRNA upstream 365761 27648003 ~ 27651082 (+) True spx
XM_039792180.1 mRNA downstream 126114 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA downstream 126115 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA downstream 126115 28149733 ~ 28293546 (+) False LOC120553593
XM_039792477.1 mRNA downstream 593637 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 1067339 29090957 ~ 29099400 (+) True LOC120553059
TU313087 other upstream 69370 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 413141 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 944291 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 1635734 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 1635734 26372736 ~ 26381109 (+) False mrps33
TU313169 other downstream 34113 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 447188 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 447488 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 477616 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 556869 28580487 ~ 28580602 (+) True LOC120553840

Expression Profile