RNA id: XR_005638075.1


Basic Information

Item Value
RNA id XR_005638075.1
length 2262
RNA type transcript
GC content 0.49
exon number 10
gene id amdhd1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7323070 ~ 7332259 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAATATTTGCCTGTTCCCAAACTAGTTGAAAGCCAGTCACTCTGAAGAGAAGTGTTTCTGCTTTGGATGaatcaaaatgtccaaaaattaTAGACTCCTGGTGAAGAATGCCAAACAGGTGGTCCTGATCTGCAACAACGGAGAGAAGTTCATGACTAAACCAGGGATGCAAAATCTTTCTGTGATTGAAAATGGGAGCGTAGTGATAGGGAGTGATGGGCTCATTAAAGCCGTGGGGCCTGCAGAAATCATCAGAGCCCAGTATCCAGAAGCGTCCTTTGATAAAGTGATTGATGCTTCAGGAATGTGTGTCCTGCCTGGGTTGGTTGACGCCCACACCCATCCAGTCTGGGCTGGTGACAGGGTGCATGAATTTGCAATGAAGCTGGCAGGTGCCACCTACATGGACGTGCACCGGGCCGGTGGAGGGATCCACTTCACTGTGGAGCACACCCGAGCTGCCAGGTCCTCGGAGCTGCTGGCCTCCCTCAGCAGCAGGCTGGTCCGGATGCAGCGAGCAGGTACAACCCTGGTGGAGTGTAAGAGCGGGTACGGACTGGATCTGCAGACTGAGCTTAAGATGCTGGAGGTGATCGAGGAGGCCAGGCACACCCTGCCCATCAACATCTCCTCAACCTACTGTGGAGCCCACGCAGTGCCCAAAGGGAAGACAGTTGCAGAAGCAACAAAGGACATCCTGCAGGTTCAGCTGCCACGACTGAAGGAACAGATGTCTGCTGGGACTCTGAGGGTCGACAACATCGACGTGTTCTGTGAGCAGGGGGTGTTTGACCTCAGCTCTACTCGTTCCATCCTGCAGGCCGGCAAAGACATGGGCCTCAACATCAACTTCCACGGAGATGAGCTTCACCCCATGAACTCTGCTCAGTTGGGTGCAGAGCTCGGAGCCTTGGCCATCAGTCACCTGGAGGAGGTCACAGACGAGGGGATTGCTGCCATGGCAACAGCAAGAACCGCCGCTGTCCTTTTACCAACTACAGCTTACATCCTACGGCTGCCTCAGCCTCGGGCCAGAGATATGTTGGAAGCTGGAGTTGTTGTCGCCCTCGGCAGCGACTTTAACCCCAACGCCTACTGCTGCTCCATGCCAATAGTCATGCACCTGGCCTGTGTCAACATGAGGATGTCCATGCCTGAGGCTTTGGCTGCGGCCACCATCAACGCAGCCTACGCCCTGGGGCGCTCCCACACACATGGCTCCCTGGAGGTCAACAAACACGGAGACCTGCTGGTCCTCAACACCACGCGATGGGAACATCTTATCTACCAGCTGGGAGGACATCAGGAGTTGATCCGTTACGTCGTCATTAAAGGAAACATAGTCGTTGATAATGGCAAAACTATGGACTTATAATCAGAAAGAAATAGTGAAGGTGCTATCAATAATTGTGATAGACAGCTAGAATATATTAAGCtaatactttgacattttttgaaaCGTGTGTTTCTGGAAACGGGGAGACCAGTTGTAGCCTAGCTCTGTCCACTGTTTTTAGATAAATGTCATCTTAACTGTTGATTAAAATCTGCCTCTCTATTCATCTATCGCTGTTTCTGTAAATCAGTTATTCAGGgactacagcagcagcagaagaatTTTCATTATCACCTCAGAAAACAGAACTGAATACTCTTCCCAGCgcacctgaggcagatctcatcaggagagatgctggaggaacACGGAACGCGCTCCAACACACCGGGagcattttgataatgaatggctgagacacaaggaggaaagaggagcggaTAGAGAGCGAAAAAGAAACGTTGGGGACGCTACAGGAGTGCAGAacggagcacagatagacggggcaggacagcggagccggagccggaggacagctgtggatgtttggcggaTCGGCGCGTTGGCTAGTACTGTACAACATTGCTGAAGAAGGTCCTCTCCTTCCCAAGGGTGTCAAAACAGTTGCCCGTTCAAATATCCCAAAATAGTGTCACACCATATGATTTTGATTTGTGTGACAAAATCTTTTTGATTAGAACTGACTCAAAACATGCTTGGACTTTGAAAAGAGTAGGCTCACAAATAGACATCTGtattatttttctgtatttttttgagaatttgtgcatttatttttcttagTTTTATTCAAGTTCTCACTTTGAGAAACAAGTGCCGGacagtcacagtcacaccaTATgagttttgttatgtttggttgaaaattctgaaaaaatgaGTGATGaactgttttaatgttgaa

Function

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K01468 hutI, AMDHD1; imidazolonepropionase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306969 lncRNA upstream 50754 7272077 ~ 7272316 (+) True G226319
TU306968 lncRNA upstream 51363 7271317 ~ 7271707 (+) True G226318
TU306967 lncRNA upstream 52317 7269104 ~ 7270753 (+) True G226317
TU306965 lncRNA upstream 54312 7267827 ~ 7268758 (+) True G226316
TU306966 lncRNA upstream 54851 7267509 ~ 7268219 (+) False G226316
TU307019 lncRNA downstream 2795 7335054 ~ 7346162 (+) True G226352
TU307033 lncRNA downstream 35117 7367376 ~ 7368168 (+) False klhl42
TU307039 lncRNA downstream 92798 7425057 ~ 7426170 (+) False ascl1a
TU307093 lncRNA downstream 198183 7530442 ~ 7532020 (+) False LOC120553154
TU307120 lncRNA downstream 234471 7566730 ~ 7569202 (+) False LOC120553156
XM_039791101.1 mRNA upstream 1881 7318517 ~ 7321189 (+) True snrpf
XM_039791597.1 mRNA upstream 55620 7257270 ~ 7267450 (+) True metap2a
XM_039791418.1 mRNA upstream 67185 7240852 ~ 7255885 (+) True vezt
XM_039791419.1 mRNA upstream 67185 7240852 ~ 7255885 (+) False vezt
XM_039791420.1 mRNA upstream 67185 7241349 ~ 7255885 (+) False vezt
XM_039792444.1 mRNA downstream 31066 7363325 ~ 7368216 (+) True klhl42
XM_039792100.1 mRNA downstream 38183 7370442 ~ 7400399 (+) True nrip2
XM_039791252.1 mRNA downstream 91359 7423618 ~ 7426254 (+) True ascl1a
XM_039791251.1 mRNA downstream 177705 7509964 ~ 7524419 (+) True pah
XM_039791253.1 mRNA downstream 193633 7525892 ~ 7532077 (+) True LOC120553154
TU307013 other upstream 2021 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 175730 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638175.1 other upstream 1949867 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1949867 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1949867 5283759 ~ 5373203 (+) False abcc9
TU307011 other downstream 64235 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1094432 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1802335 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1905005 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2860067 10192326 ~ 10192412 (+) True trnay-gua_57

Expression Profile