RNA id: XM_039791045.1


Basic Information

Item Value
RNA id XM_039791045.1
length 3195
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC120553005
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19418241 ~ 19428429 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGCTCGAGAGATAGCCGATTAGTGACGGTGATTGAGCACGTTAACTCTGGCGCATCGCTCTCACGCTCTCTTTAAAATTTGTCGTCTTTTGGAGAAACCGCAGGCTGAATTAGGAACTGAGGCTACTTTGTTACCATGTTTGACTTAAAGAGGAGTAATAGTTTCACTTTGAACAGCCGTGAGACGGAGTTCAGTCGAGTGGCGGTCAGACGGAAAGTCAGTGCTGCTGTGGACTGCCTCGCCTCACACACAGTGCCTCCTAAACCAGCTGACCTCCAGAGTCCTCTGAGGGCAGGACAAGCTCGAGCCCTCAGTCCCTCTACAGGGAAATTACTACCTCAGCAAGTTAGTGGCACAGAGCAAGACCAGAGTCCTAACAGAAGTTGCGGagtttctgtttcctgtgtcAGCCCAGCACAGAGTTGTCTAGGCTCCCCTAGTCCTATCAGAGGAGGAGGGAACAGTTTTTTGAATGTAGTGTCTGAAGTACGGATTAGCCCTGCCAGACATACACAGGGGATTCCACATTTTACAAGCAGTCCACTTTTAGGATCTCCAAGTCCAGGCAAAAGAAGCATTCAGAGACATAGCCCATTTAGGGAAGGAGGCCACAGCCCTGCTAAACTGTCCCCAAGGAACCGTAGCCCTCTTGCACGATTACTGCGGACCCCCAGCCCTGTGCAGGGGAGGATGGGGAGCTACAGTCCCACCAATAACTCTAAATCCTGGCTCGGACTGCACAGAATCCCAAGCAGCAAAATGGAAGGACGAGAGAAGAGAGTGTGGAAATCTTTGAGCGTGCCTGACTTGATCCTTCTCTTGAAGGAGAGCAGGATTCCCACCGAAAAAGTTGAACGCGCTCCACTGAAACCACTGCAATTACCCAACTGCAGTGGGCCAGCCAGCGCCATCAAATCACCGGTTAACCATAGACTCAATCATGCCACAAGTGAAGCCCATCTATTAAGCAACGGTAAAGAGCAGTCCCCAGGACAAATGAAGGGCATAGTTCAGGGGAGAGATTGCACAATAGTAAATGGGTCGGGAAAAAATGAGAAAATGGAAGAAGGCAAGATACCCGTTGTATATGGCTCTAAGTCTTCCTGCCAGTGGAATGAGGCAACTATAGAAGATGGAAGGATTCACAAGGAGTCTAAAGGTGAACAAAAGGATGAGGAgatgaggaaggagagaggagaaggcgAGCCAAAAGATGAAGAGAACATCGAGCAGAAATTGTACAAGATAGCCAATGAACTCCTGCAGACGGAGAGAGCCTACGTGGCTCGTCTCCACCTGCTAGACCAGGTGTTCTGCTCACGCCTAACAGAAGAGGCAGGTCGAGGGTCGTTTCCTCCTGACGTGATAAGAAATATCTTCTCAAACATTTCCTCTCTATACTCCTTCCACAACCAGTTCCTGCTACCTGACCTGGAAAGCTGCATCAGCCACTGGTGTGAGAGCCCAGGCCTGGGTACTGTTCTGCTGCAACACGCACCCTTCCTGAGGATGTATGCGGACTACGTCACAAACTTTGACCAGGCCATGGAGCTGGTGAGGACCTGGACTGAACGCTCCTCTGCTTTCAGAAACATAATCCAGGACATACAGAGTCAGGAGGTATGTGGCAGCCTGACCCTGCAGCACCACATGTTGGAACCAGTCCAGCGGGTTCCACGTTATGAGATGCTGCTCAGGGATTACTTGAAGAACCTGCCCAAAAACCACCCAGATTATGATATTGCTTACAAATCCTTGCAGACTATTTCCATGGCAGCCATCCACTCAAACAGCGCCATCCACAAAGCTGAGAGCTTAAAGCGGATGGTGGAGATCTATGAGATGGTTGGAGAGAAGGAGGTGGTCAACCCGACGAACGAGTTCCTCAGGGAAGGTCGTCTGCTCAAGCTTGCTGCCAGGAACACGTCTGCCATGGAGAGGCACCTCTTCATGTTCAACAACTTTCTGATGTGCTGCACTCCTAAGTTCAGCCTAGTTGGGCAGCGTTTTACTGTCCGCTGCAGGATCGGAGTGGACGGCATGCAGGTGCAGCAGACCACCAATGAAGACCACCCATACACCTTCCAGGTCTCTGGAAAGGAGAGGACCCTTGAGCTGCaggccagCTCTAAACAAGACCGAGATCAATGGATAAAGgTAATTCAGGAAGCCATTGACATCTTTCAGAAGAACAATGAAACCTTCAAATTGGCTTCCAGGGAGCTAAATATACAAGAACCAACTGAGGAACTCGGCCGACGTGCCCCTCGCTGGATCAGGGACAACGAGGTGACCATGTGTATGAAATGCCAGGACGCTTTCAACGCACTCACCAGGAGAAGACATCACTGCAGAGCCTGTGGCTGTGTGGTGTGCTGGAAGTGTTTAGACAATAAAGTGGCTTTAGAGTATGACGGCAACAAGCTGAACAAAGTGTGTAAAGCCTGCTACTCCACCCTGACtggtcagagggaggagaggataCTGGAGTCGGAGGCATCTCCAGTGTCCAGTGACTGCGTAATGAGTGGCTTCCTGCTGTATGGTGACAACCCCAAGACCTGTCAACAGGTGTGGACCGTTATCAGCCGGACTGAACCTCCGGCCCTCCACCTGTATACTGCTCCACAGGACGTGAAGCCCCTATCCAGTATACCTCTACTGGGCTGCAGTGTGGAGGATTCCCCTCAGGAGCTCCAGGGTCAGCCTTGTTTCGGTTTAAACCAATCCAAAACCACCCACACTTTCTTCTGTGATAGATTGGACGTCAAACAGAGCTGGCTGACGGTTCTGAAAGTTGCAGTGATAGGCAGGCAGTGCACGCTTAATGGCTACGGCATCACCACCAATAGCTCCACATGTGGCATTAGTGGCATTGTCAGTGATGGAAGCGTGTGTACTGGTGAGGAATGTATCGTCACTGGCGACGAGGTAATCCACTCCTGAATGTTTGAGATCAGGTACTACGGAAAGAACTCTTACAAGCATGTACACTCGCACAACACCAAAGGAAAGTCCATTGATGTTAAAGACAGTAGCTTTGAACTAAACATTtgataaaatgaatgaaatctaGGAATGTAAAGGTTGTTAATAATATTCAGACTGAAAACTGTGTTTTCCTTACAAGTGGCAATGCACTTTATTTCTAAAATggtttacagtaaaataaataaagtgaagGTGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310495 lncRNA downstream 3639 19414330 ~ 19414602 (-) True G228855
TU310479 lncRNA downstream 42446 19375459 ~ 19375795 (-) True G228839
TU310478 lncRNA downstream 42880 19374204 ~ 19375361 (-) True G228838
TU310476 lncRNA downstream 52713 19365124 ~ 19365528 (-) True G228836
TU310475 lncRNA downstream 53825 19364156 ~ 19364416 (-) True G228835
TU310491 lncRNA upstream 52392 19480821 ~ 19481084 (-) True G228851
TU310512 lncRNA upstream 52795 19481224 ~ 19481477 (-) True G228869
TU310513 lncRNA upstream 53743 19482172 ~ 19482617 (-) True G228870
TU310514 lncRNA upstream 54438 19482867 ~ 19483153 (-) True G228871
TU310527 lncRNA upstream 70809 19499238 ~ 19499610 (-) True G228880
XM_039791046.1 mRNA downstream 10883 19396856 ~ 19407358 (-) True arl1
XM_039792053.1 mRNA downstream 56131 19355872 ~ 19362110 (-) True slc5a8
XM_039791263.1 mRNA downstream 64750 19346382 ~ 19353491 (-) False dnai7
XM_039791749.1 mRNA upstream 66990 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA upstream 66990 19495419 ~ 19503924 (-) True rpap3
XM_039791748.1 mRNA upstream 66990 19495419 ~ 19503919 (-) False rpap3
XM_039792228.1 mRNA upstream 118197 19546626 ~ 19569057 (-) True lrig3
XM_039791390.1 mRNA upstream 304637 19733066 ~ 19806755 (-) False LOC120553212
XR_005638136.1 other downstream 996834 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 1317246 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1490536 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 2116043 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2594809 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 10088 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 14803 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 18592 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 19635 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 23559 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile