RNA id: XM_039791046.1


Basic Information

Item Value
RNA id XM_039791046.1
length 1558
RNA type mRNA
GC content 0.46
exon number 6
gene id arl1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19396856 ~ 19407358 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGAAAGTTGCGAATCAAAATCGAAGCGAGAGTTGGTGATAGTTCAGCGACACGTCAACCACACGGAAGAAGGTGTCTGCCTCACCTGCCACTGTATTGCTGATTAACACCGTTGTCTTGTCGAAATGGGTGGTTTCTTCTCTAGTCTCTTCTCGGGCCTGTTCGGCACCAGGGAGATGAGGATTCTGATCCTGGGTTTGGACGGTGCAGGAAAAACCACTATTCTATACCGGCTGCAGGTTGGAGAGGTGGTCACCACAATCCCCACAATTGGCTTCAACGTCGAGACAGTCACATACAGAAATCTGAAGTTCCAGGTGTGGGATCTGGGAGGACAGACAAGTATCagGCCCTACTGGCGGTGTTACTACTCCAACACAGATGCGGTCATCTACGTGGTTGACAGCAGCGACCGCGACAGGATGGGCATCTCAAAGTCTGAGCTGGTGGCCATGTTGGAGGAGGAAGAGCTGAAGAAAGCTATCCTGGTGGTATTTGCAAACAAACAGGACATGGACCAGGCCATGACTCCCACTGAGGTGGCCAACTCTCTGGGCCTTCCCGCCCTCAAAGACAGAAAATGGCAGATCTTCAAGACCTCGGCCACAAAGGGCACAGGCCTGGATGAGGCAATGGAATGGCTGGTGGATTCCCTGAAGAGTCGGCAGTAAAGGCTCCCACCCATTCTGTATATACTCCTGACCTTTTGACCCCTCTGTATGAAGCCTTGTGACTGACCCATCTCCACGACCCACTGGACCAGTAATTGCACTCCTCCCCATCTCCAACCCAACGGAAGCCTTGGCCAAGCCCTCCCCAATGCCTTTCATGCCTGGGACTTAAAAGAGAAGGCTGCAGTAACATCTGGTTGCCTGAGGAAGTGAAGGTTTTAGAGAGCATGTATGACAGAGCGGTGGACAAGTTAGTAactacatttttgtgttttgtaaatGCAAACAAAGTGTTAAACGACGTGCTAAATGTTTCTAATTTTACAATTCCATTTGTTAAGCGTCGACACTAAAATAAGGCTCTGTGAAAATGCTGTCCACTCTAACATTTCTTCGCTGATCAATGCATGTTAGCTTTATCTTCTCTCAGAGGGGTTATGTAGTTTGCATGTAGTAAAGTCAGCAAGATGCAGTGAAGATCCACTGGGTGGCAGTGTTTCCCTtatatgcacacacagtatCACTGAGAAGCAGCTACCTGATTGCACGAAATGTTCAGATTCACTTTTGAAAATTCAGTCTTAATTAGTAGAAAAAAAACTACTATACCTCCTCTGGCCAAGTGTTACTGCAGCCTGGGCTGTTTTTGTACTATATAGTTAGGTAGATACAATGTCATGGATTTATATTGTTATTTCCCTCCTgttatttaaaagataatttagtAGTTGAAGCCTTTTTCCATCGAAACCCTCGAGTGCAGCTTTGGCATATTAGTCATTTAGTTACTGAACACTAACTGTATGCTCAAAGTTTTATGGTTGCATATTTATATCTGCTTGTACAGTGAAAATGATTCTCAGTAAAGATTGCTATCAATGATTGTA

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0007030 Golgi organization biological_process
GO:0009404 toxin metabolic process biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0034067 protein localization to Golgi apparatus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
K07942 ARL1; ADP-ribosylation factor-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310479 lncRNA downstream 21061 19375459 ~ 19375795 (-) True G228839
TU310478 lncRNA downstream 21495 19374204 ~ 19375361 (-) True G228838
TU310476 lncRNA downstream 31328 19365124 ~ 19365528 (-) True G228836
TU310475 lncRNA downstream 32440 19364156 ~ 19364416 (-) True G228835
TU310474 lncRNA downstream 33475 19363172 ~ 19363381 (-) True G228834
TU310495 lncRNA upstream 6972 19414330 ~ 19414602 (-) True G228855
TU310491 lncRNA upstream 73463 19480821 ~ 19481084 (-) True G228851
TU310512 lncRNA upstream 73866 19481224 ~ 19481477 (-) True G228869
TU310513 lncRNA upstream 74814 19482172 ~ 19482617 (-) True G228870
TU310514 lncRNA upstream 75509 19482867 ~ 19483153 (-) True G228871
XM_039792053.1 mRNA downstream 34746 19355872 ~ 19362110 (-) True slc5a8
XM_039791263.1 mRNA downstream 43365 19346382 ~ 19353491 (-) False dnai7
XM_039791261.1 mRNA downstream 43366 19346318 ~ 19353490 (-) True dnai7
XM_039791262.1 mRNA downstream 43366 19346382 ~ 19353490 (-) False dnai7
XM_039791266.1 mRNA downstream 43366 19346382 ~ 19353490 (-) False dnai7
XM_039791045.1 mRNA upstream 10883 19418241 ~ 19428429 (-) False LOC120553005
XM_039791044.1 mRNA upstream 10883 19418241 ~ 19428429 (-) True LOC120553005
XM_039791749.1 mRNA upstream 88061 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA upstream 88061 19495419 ~ 19503924 (-) True rpap3
XM_039791748.1 mRNA upstream 88061 19495419 ~ 19503919 (-) False rpap3
XR_005638136.1 other downstream 975449 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 1295861 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1469151 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 2094658 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2573424 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 31159 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 35874 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 39663 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 40706 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 44630 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile