RNA id: XM_039791056.1


Basic Information

Item Value
RNA id XM_039791056.1
length 3883
RNA type mRNA
GC content 0.47
exon number 16
gene id impdh1b
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10948285 ~ 10986201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTCCATTCACCGTGTAAAGGAAACGCTCAGGGCAATGAGTGCTTTATCCTACATATAAGTACAGTACAGGGCTCATCTACCCTCTCCATTACCCTCTGCCTATATGACAGAAAATCTTCTCCAAGATTTCGAAGACATCAGCACAACAGCCTCTCCACAACAACGCTCTGCTGCTGGCATCATTTCCACGGTGACACCCTCTCAGTGGGAGAATCTCCTAGGTGACGCCCTTTATCGACACGCCTAGAGGTGGCTGGTGCCTTTTTGTAGGCAGGTGCATCCTGTGCAGGGGCAGACGGAGTAGCCTGACAcaggtcttttttttcctctgtgtgGGAACACCAATGCAGCTCCATTTCTGGTCTGGAAGGCAGAGTAAATAGAGCAGACAAAGGAATTCAGATaagaatatttaaaaacaaatggagagtttgcatttgttttgcaaATTGTCACTCCTCCAAACTTGGGTTATGAGGTTCATATGAAATCAGGGTTTCAAGAAGTTTTCCGTTACACATGTAATCTTCAGCTGTTGGATATTTTCACTGACtttgtaaattaaatttaaagctAGCAAGCAAGCTGCAcagcaaagcaaagcaaagcaaagcGAAAGGGCCACTGGATCCTGGGACTGACCTTGGACGGACAATGGAGGGGTATGGTTATGAGCACTTTGGTGCAGATGCAGCGAGGGAGAGCCAGCAGGTGGATTATCGAAGAATCGTAGGAGACACTCAGCCCCCAGATACCGACGTTTCATCCCAGGAAGGGCAACATTATGTCCGGCAAACCTCACATCATGGCCATGGACATGAAACTGCAGCTCAGAGATACAGTGCCACACGCATCCAGGCTGGTCTAGGCCCAGAGAGCATGGCGGATTACTTAATCAGCGGTGGTACAGGCTATGTCCCTGAAGATGGACTCTCAGCTCAGCAGCTCTTCTCGATTGGAGATGGCCTAACATACAATGACTTCCTGATATTGCCGGGCTTCATCGACTTTACCTCAGACGAAGTGGACTTGACATCAGCGCTGACCAGGAAGATCACATTGAAGACCCCTCTCATCTCCTCCCCCATGGATACTGTCACAGAGTCGGCAATGGCAATTGCTATGGCTCTAATGGGAGGCATTGGTATCATCCACCACAACTGCACACCAGAATTCCAAGCCAATGAGGTCCGCAAGGTTAAGGTTCTGAGGTTTGAGCAGGGTTTTATCACAGACCCAGTTGTGATGAGTCCACGCCAGACAGTTGGGGATGTGTTTGAGGCCAAAGTAAGGCATGGCTTCTCTGGTATTCCGGTCACAGAGACAGGCAAAATGGGCAGCAAACTAGTGGGCATCGTCACCTCCCGAGATATTGACTTCCTTTCTGAGAAAGACCGTGGCAAACCTCTTGAGGAGGCCATGACAAAGAGGGAGGAGTTGGTGGTGGCTCCAGCCGGTGTTACACTGAAAGAAGCCAATGATATTCTGCAGCGCAGTAAAAAAGGCAAGCTTCCCATTGTAAATAATAACGACGAGCTGGTGGCCATTATTGCCAGGACGGATCTGAAGAAGAACCGGGACTACCCGCTGGCCTCCAAAGACTCGCGCAaacagctgctgtgtggtgCCGCCATCGGCACCAGGGAGGATGACAAATACAGACTGGACCTGTTGGTGCAGGCTGGAGTGGATGTTGTTGTACTGGACTCTTCGCAAGGCAACTCGGTGTATCAAATCAACATGATAAATTATATTAAACAGAAGTATCCAGAATTGCAGGTGGTGGGAGGAAATGTGGTTACAGCCGCCCAGGCCAAGAATCTGATCGATGCTGGTGTCGATGCTCTGAGAGTCGGCATGGGCTGCGGCTCAATCTGCATCACTCAGGAAGTCATGGCATGTGGGCGGCCCCAGGGGACCTCTGTGTACAAGGTAGCAGAATACGCCAGGCGCTTTGGTGTGCCAGTCATCGCTGATGGCGGCATTCAGACTGTGGGCCATGTGGTGAAGGCTCTGTCTCTTGGAGCATCGACTGTTATGATGGGCTCGTTGCTAGCGGCAACCACTGAGGCTCCAGGGGAGTACTTCTTCTCAGATGGTGTGCGGCTGAAAAAGTACCGTGGTATGGGCTCCCTGGACGCTATGGAGAAGAGCACCAGCAGCCAGAAACGCTATTTTAGTGAGGGCGACAATGTGAAGGTAGCCCAGGGTGTGTCAGGCTCGGTCCAGGACAAGGGCTCCATCCACAAGTTTGTACCTTACCTGATAGCTGGTATCCAGCATGGCTGCCAGGACATCGGGGCAAAGAGTCTTTCTGTTCTCCGttccATGATGTACTCTGGAGAGCTGAAGTTTGAAAAGAGGACCATGTCTGCACAGGTGGAGGGAGGAGTTCATGGACTTCACTCTTACGAGAAGCGGCTTTACTGAGCGGGGGGATGGAGTGCAGATCATCGTTGCACGTGACGCACCCAATCTAACAGTGACCAAATGTTAAGTCGCCACTTCTGCTAAAATACGCACCACCCACTACACCCTTTTGCCCCATCCTCCGTCGTATTCAccgttcctctctctctctccccgatCCCAGCCAGCTGCTTTTGGGAGGAAAGAGGCAAAGTAGCGAAGGGAGGATCTCCAAACAGACACCCGACTCTCTGAACACCTGGGATTTTTGCACTCAAGAAGTGGCGCATCAGGGATTTCGGAATGACATACGCACCTGTATCTTGAGTATGCAGCCGATCCCAATTTAGCGTGTGGCTTGAGAGTAGTGAGAGAATGAACTGCGTGCCTGTTTGGTGAATTAAGGGTAGTGTGTGTCCAACTCTGTGATATAGTTTAAAATGTGTCTTGGGGCAAGTAAGTGAAGGTGCAGTGTGTTAATATTAGGGAGTCTAAAATAGCCATGGTGCAGATCACATCAGCATCTTATCTGGCTTTTTTAGGATCCACACTTACCAGCCTGCTCCCCATCTCAAGTCTCTTACATCTCAGCTCTTACACACACTAGTATGTGCAGAAAACAAGACGAAACACTTGTCTCTTTATGTGCAGTGTGTCGGTGTTTCATGGCAATCttaccttattttttttttgtcatcacaGCTATAAGCTACTTAATGAACGGTAGCTGCTTATATTTCAGCGCATATTGTTTACTTCCTGTATTGTGGATCCCGAGGTAAGAGATATTGGTCGTAACAATTATTCTTTCGACTCTGTGTTCCTCCAGTGTCCCCTACAATCATTAGACAGAACCCAGACCCGCAGTCTTTACTACTGTGGACGTTCATTTTCCCTTCAACGATCTCTTGACAAATAATCAGTATCCCATTTTAGTGCATAGTGTTCATATGTTGAGCATGGAAGGGACCAAAAGCTGAAGATCAGGAATGTTTGAAAGAAAGACttaatcaaatcaatcaaaaataGTTCACAATGAGGACAAAGTACTATTTCTCTAACCTTAATTTGAATACTtttagataaagaaaaaaactttataTTAAACCTGTATTGTCTTTGGGGGGCTTTGAATTGAGCATGAAGTGTTTTTGAtatgcatgtttgttttttcactaAGCCAAACATGGCTGTATTTATATTCTGCTTTATTGTAATTGCATACATACTGCCAAGTGTctttacacttcctctgacacTTTTCTTTTGTAATTTCAAAACCAAAATTGGCGCAAGAAGTCACTTGTTACCTTTGTCGGTTGTTCATTCCTGCATTCTCAGTGTGGCATAGGTTCTCTGTTACCATAGGTGTATTTTAGTTCTgatttatttgtttctttttaccAGAGATATGCCTTGAAACGGGGATGAATAAAATCTGTGACGGCTCAGTGCAAAAGTATAAAGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308143 lncRNA upstream 12542 10935104 ~ 10935745 (+) True G227177
XR_005638173.1 lncRNA upstream 20433 10914935 ~ 10927854 (+) True LOC120553495
TU308118 lncRNA upstream 75608 10872047 ~ 10872679 (+) True G227155
TU308115 lncRNA upstream 75608 10872100 ~ 10872679 (+) False G227155
TU308112 lncRNA upstream 96336 10842556 ~ 10851951 (+) False G227152
TU308188 lncRNA downstream 24913 11011114 ~ 11011315 (+) True G227204
TU308212 lncRNA downstream 57211 11043412 ~ 11054195 (+) True G227217
XR_005638092.1 lncRNA downstream 105989 11092190 ~ 11092674 (+) True LOC120553063
TU308210 lncRNA downstream 116635 11102836 ~ 11112905 (+) True G227216
TU308211 lncRNA downstream 116635 11102836 ~ 11112905 (+) False G227216
XM_039791229.1 mRNA upstream 274236 10672048 ~ 10674051 (+) True si:dkeyp-38g8.5
XM_039791219.1 mRNA upstream 289276 10648321 ~ 10659011 (+) True scyl2
XM_039791220.1 mRNA upstream 289276 10648321 ~ 10659011 (+) False scyl2
XM_039791221.1 mRNA upstream 304516 10638588 ~ 10643771 (+) True depdc4
XM_039792002.1 mRNA upstream 426050 10379970 ~ 10522237 (+) False anks1b
XM_039791047.1 mRNA downstream 33025 11019226 ~ 11023758 (+) True LOC120553009
XM_039791244.1 mRNA downstream 376562 11362763 ~ 11367955 (+) True lrrc4.1
XM_039791007.1 mRNA downstream 467259 11453460 ~ 11456592 (+) True pax4
XM_039792456.1 mRNA downstream 825826 11812027 ~ 11822653 (+) True LOC120553760
XM_039792457.1 mRNA downstream 828912 11815113 ~ 11822653 (+) True LOC120553761
TU308097 other upstream 210784 10732069 ~ 10737503 (+) True G227141
TU308063 other upstream 248569 10697254 ~ 10699718 (+) True G227121
unassigned_transcript_1483 other upstream 753081 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 753771 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 755875 10192326 ~ 10192412 (+) True trnay-gua_57
TU308205 other downstream 116635 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 116635 11102836 ~ 11112905 (+) False G227216
TU308276 other downstream 702968 11689169 ~ 11757317 (+) True G227278
TU308397 other downstream 1134671 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 2019138 13005339 ~ 13020260 (+) False nrf1

Expression Profile