RNA id: XR_005638087.1


Basic Information

Item Value
RNA id XR_005638087.1
length 6137
RNA type transcript
GC content 0.51
exon number 33
gene id ptprz1b
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21063691 ~ 21145533 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATAGTGACGGAGAATAGCCCCATTGGTTGCCATGGCTCCCAGCAGCAATCCATCTCAGTTTGTGCGGACTgaagggaataaaaaaaaaaagtactctgATGCACCCTCTTCTTTGgaaaTTGTGGCAGCAGAGCCGCTGGTCCGAGGCCTGAGGAAACTCCCCGAAGATGTCGACTGGTCCTACTCAGGTGCCCTGAACCAGCACAACTGGGGAAAGAAGTACCCGCCCTGTAACAGCGCCCGGCAATCTCCTGTGGACATTGACGAGACGTTCACCCAGGTCCGGCTGCAGTACCAGAATCTACAGCTAGAAGGCTGGGACAAACTGACCGCAGAGTCCAGCACCATCCACAACAACGGGAAGGCTGTCTCCCTCCATGTGGAAGGGGAGTTCTTTGTCAGTGGAGGAGGGCTGAGCTCCAGGTTCCGTGTTGCTACAGTTACCTTCCACTGGGGGCACTGCAATGCCACATCAGATGGGTCTGAACACAGCCTGAATGGGATGAAATACCCTCTGGAGATGCAGATCTACTGTTACGATCCAGATGACTTCCAAAGTCTGGAGGACGCTataagagaaggagggaggatcGCTGCTTTGGCAGTGCTCTTTGAGATCAGCTTGGAAGACAACGAGAACTTCCGTCCTGTAATAGAGGCTGTCAACACTGTCAGCAGGTTTGGTAAGAGCGGGTCGATGGAAGCTTTCACCATGCGGTCCTTGCTGCCGAATAACACAGATAAATATTACATCTACAATGGCTCACTAACTACACCCCCCTGCTCTGAAACGGTGGAGTGGATCGTCTTTAAACACACCGTGGCCATATCCGAAACACAGTTGGAGGTGTTTTGTGAGGTGATGACCGTGCAGCAGGCTGGATATGTGATACTGACGGATTACCTGCAGAGCAACTTcagggagcagcagcagcagttcatggGTCAGGTGTTTGCCTCGTACACCGGAGTGGAGGAAGTGCTCACACCCACCTGCAGCTCAGAGCCAGAGAACGTTCAGGCCGACGCCCAGAACGACACAACCATCATGGTGATGTGGGAGCGTCCCCGTGTGGTTTACGACACAACCATCGACTGGTACACCGTCACATACCAGAGGCTACAGAGCCGAGACCAGAGCAAGCAGGAATACAGGACAGACGGGGACCAGGACGTGGGTGCCATCATCCCTAGCCTGCTGGCCAACAGCAGCTATGTGGTTCAGGTGGTTGCAATTTGCACCAATGGACTCAGAGGACGATGGAGTGACCAGATTATAGTGGACATGCCGTTAGATGaccctgAAAGTGATTCGGATCCCGACGCCGTCACAAAGGATTTGGAAGGCCGCAGGGAGGTCTCATCTAAAGCCAAATCAGAGAAGCCAGAGAACCAGAATCAGGTGGATTTGTCTCCAGAGGACCACAGCCCCGTGGAGGAGATCCCAGTGGAGCAGACCAGAGTTTACCAGAACCAGCCCTCCCACCACCAGAACCTCCCGGTCCAGGTCAGCACCCCAAAGACTCCCTACGAGTCCGCCGTTCTACAGAAACCTCGATCCAGCCAGGATGGGAAAAAGAAGCCGGACCAGAACGGGTCTAGTCCCGATGATATGGATCAGAACTGGATTTACGAGGACAGTGATCCAACACGCGGGCCGCTCAGAAACGCCGGTTTTGACAGCAACGGCGCAATATGGGTCACTGAGGTAACCGAGCAGCCGGGCTTCCTGTTTCCAGTCGCTCGGACAAACACACTGCCGGCGGTTCGCCGACAAATCACAGAAGAGGCCTCGTTGTCAGTGTTGCCACATCAGTCAGGGGATCACAGTACACAAGACCGAGCTGGAGAAAGTGGCCTCCCTTCTCCCCAAACGGACGTCTACACCCCTCCTATGGAGGACGTCCAAGTCACAGATATCTTCTATGAAGACACAGTCAACCACTCTCCACTAGAAAGCAGCACCTCTGCTGCAAcagtgtcttcttcttctgctgctgctgtgttgcCAGGTAATAAAGTGGACAAAGTCTCTTTGCTGTCCTCTGGAGACAAACCTCTACCAGAAACCATCACCTCCGATTCCTCCAGCCCGCCCCCCCTCTGGATCACGGCGAGGGCGGCCACCCCCAGCAACACGCTGGCCGAGTCGGTCTACAAATCATTCACCACCTCCCCTCTCCTCAGGGCACTGATGCATACGACCCAGCCCATGTTCAACGAGGGAAGCAACAGCAGCCACGAGTCTCGGATCGGGCTGGTCGCAGGTCTGGAGAGGGAAAAGAGGACAGTCGTTCCTCTGGCTGTCGTCTCCACTCTCACCATCCTCTGTCTGCTGGTGCTTGTGGGCATACTGGTCTACTGGagAAACTGTTTCCAGGTGGCTAATTTCTACCCAGATGACAGTGCGTCACCTAAAGTCCTATCAGCTCCATCTACACCCCTGCTGCTGgccacagACGGTCACGAGCCGCTGTCGGTGAAACAGTTTGTGAAGCATGTCATGGAGCTGCACACCACCAACACTTTCTCCAAGGAGTTTGAGATTGTCAAAGAATCCTATGAGGAAGTGCAGGCGTGCACCGTGGAGATCGGCATCACTGCAGACAGCTCCAATCACCCCGACAACAAAAGCAAGAACAGATACATAAACATACTGGCCTATGACCACAGTAGAGTCAAACTGTCCAACAGCTTGGACAGAGACGGGAAATGTGGAGACTACATCAACGCTAACTTTGTAGACGGTTATGAGCGAACGAGGGCGTACATCGCAGCTCAGGGGCCCCTCCGAGCGGGCCGGGAGGACTTCTGGAGGATGATCTGGCAGCAGAACGTTGGAGTCATTGTCATGATCACCAACCTCAAGGAAAAAGGACGGACAAAATGTGACCAGTACTGGCCGGAGGAGAACCAGGAAGAATACGGCCCGTACCAGGTGACCCTGAAAAGCAGCAAGACCCTCGCTTACTACACGCTGCGGATGTTCACTGTCAGAGATACCACAAATAAgGTTTCTCAGAGGAGAGTTGAACACACCGTCCTCCATTACCACTACACCCAGTGGCCAGACATGGGCGTCCCAGAATACACTCTGCCTGTCCTGTCCTTCATCAGAGCATCCTCTCGGGCGCGGACACAGGAGATGGGACCCGTACTGGTACACTGcagTGCCGGTGTAGGAAGGACCGGAACCTACATAGTGATAGACAGCATGCTGCAGCAGATCCAGGATCAGGGTACGGTGAACGTTCTTGGTTTCCTGAAACATGTCCGAACGCAGAGGAACTTCCTGGTTCAGACGCAGGAGCAGTACGTGTTCATCCATGACACTCTGGTGGAGGCCATCTTGAGCCGTGGCACCTcggtgacctctgacctcctccACACTTATGTGTCTGACCTTCTAACCCCTGGGGCGTTAGGCAGGACACGCATGGACAAACAGTTCAAGTTGATCAGTCAGCGTCAGGCCAAGCACGCCGACTACAGCACCGCCCTGAGAGACGGCAATGCTGAGAGGAACCGAGCCAGAGCTCTGATGCCTGTGGAAAGATCAAGAGTGTGTCTGACCGCTGCCGAGTCAAACTCCACCGGGTACATCAACGCCTCCTACGTCATGGGACATCACCACAGTAAGGAGTTCATAGTGAGCCAGACTCCTCTGAGCAGCACGGTGGCAGATTTCTGGAGAATGGTCTGGGAACACGGCACACACACTGTTGTCCGTCTGCCAGACACACACTGTcagAGTGAACAGGGGGAGTCTTGTGTTTACTGGCCCAGTAACGACCAGCCAATGAGCTTTGAGGGTTTCACTGTGTCGTACTCGGGGGAGgagcatgtgtgtctgtccaaTGACGAGAGACTTTTGGTGCAGGACTTTACAGTGGACTCTCCAGAgAACAATTATGTGTTGGAGGTGCGTCAGTACAGCGCCGCCTGCTGGCCCAACCCAGACAGTCCCATTAGGAACTGTTTTGATCTGGTCAGCACAGTCCGAGAGCACAGTAGACATTCAGACAGACCCACAATCATACACGACCCgctGGGAGGTGCTACATCAGGGCTGTTCTGTGCCCTCACGGCCCTGTCCAGTCAGCTAGAGGAGGAGGGAGCGGTAGACGTTTACCAGGTGGCACGGATGACCAACCTCATGAGGCCTGGGGTTTTTAATGATTTAgaGCAGTACCAGTATCTGTACCGAGCTGTGCTGAGTGTGGTGAGCAGCCAGGAAGACCAGAGAGCCCTGCAGAGTCCAGAAACCAACGGATCGGTACCACTGGGACAGACCAACATCGCTGAAAGCCTGGAGTCACTCATGTAGACACAGGCAAAAACAACACGCAAACATGTCACATACACAGAAAATAtgcatcacacagacacacacacacagacacacacagacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagactgagtGCTGTGGTGACTTAGGCTTAGTCTGACATGAGATGAGAGGATGAACACCaccttttctgtgtctgtggttCATAGCTGTGTCCGCTGGGCGTGTGGCGTGGTTAGACAGGTCATTAAAAGTGATAACCTTTACTCACTGTGTCATACTGTCAGCGTTAGCGTGCACAGCAGACTGAGCTACCAGAACCCACCAGGCACAGAGCTTATTTCTGATGTTTAACCCTCATGTCGGACACAGTGACCAACCGGCCATGATGCGACTCCTCCTTTTACAAGGGCAAAGGTACCACTTTCAAATAAGGCACTGCTTATAAAGGATTTCATTTGAGTTATAAATGGTTGATAAATAATGTACTCATTTTTCATAGATCAGTGATAGGtctttaaataaacaatgtttGTGTTGCCAGGTTGTTAAACTCCCTTTGACTGCTCAGACAGTTTCAAATCCATTTAGTCAAATTATAACTACGTTCTTAATGGCTTAAGAACGTAGTGAGAACTCAATGAGCATTTATTAAGGGTATATTATgaagtattttacaaaaaaactaTGTATAGATTAATACAAAAATAGTCCCTTtcaatcatcacttatgacCTACTAGAAGTGTGTCGTGGTATCTGATCCTCTCTTCTCATTTTGCTGAGTGCGGGACGTTTATGGGCGTCAGCAAAAAGCCTTTGAGCCCCACGTGCAGGGTGGGCAGCCAGTTGTCATTTCCAATACGCTGCTTAATCACAGATCAATCTCTGCATTCCCACTGAATCTAGCAATGTGGCTCCTTCTCGCAGAGGTATGGCTGCGTTTATGGTGGGCTTTGGAACGTAAGCGCTGtgaaacaatcagaaaaaacgttttattcctccgattcactgctttgtgcggcgctccctctcttcattcactctctagctcgaccaccactgctctctctctctctctctctggctcatTTAGCCGGGGAGGAGGGGCCAACTGTGACCGCTGTTTACAGACCGTACCGCCTGGATTCCACCAGGCGCAGATGCGCCGCGTTTCGGTTGGGCCGTGGTTTTGTTCCATCGTTCGCCACACATACCACGCTGGGAGCatctcagaagcggagcgtctgGCACAGACGCGCCTGGTAGAATTAAGGGGTTCCTTATTAGAAAGTTGTACCAAGAAAGCTTCACTGCCTTTTCAACAAGAACCAACAAACTTTCCAACTGTGTATCTGTTGCTGGTCAGCATGGAGCCTGAAGCTGCAGAGAGGAGAGGCCAAAAACCTTCGgaggtgaatttttttttttttttttaggtagaATTTCTACCTAAAATTAATTTCTCATTTCATAGGAAATTATTTTTCTTAATGATGAAAGGAGTCAGCTGTTTAATTCCAACAACAGACCTACCTTAAATTCGTAACTTATGTCTATTTTAATCTTTCgttaacatttatttctttgatTAGTGGTCTCTTTGCCTTTTTCATCACTCGGTCTTCTAAAAGACAGACATGAATATGaataaaaattgaaattggcaAACAGGCAAAACAAATAGAAATATATTCGATGCAAATGATAGTAGAACAAGATGACTTCATTGTTAACCAGCAGATTTTGGGGCTCAAACTACCACGTATCCTTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310982 lncRNA downstream 1255 21019259 ~ 21062436 (-) True G229235
TU310983 lncRNA downstream 1255 21019259 ~ 21062436 (-) False G229235
TU310905 lncRNA downstream 196162 20867300 ~ 20867529 (-) True G229172
XR_005638201.1 lncRNA downstream 208425 20776403 ~ 20855266 (-) True LOC120553789
TU310901 lncRNA downstream 283783 20779683 ~ 20779908 (-) True G229168
TU310999 lncRNA upstream 52935 21198468 ~ 21199259 (-) True G229248
TU311069 lncRNA upstream 118968 21264501 ~ 21264812 (-) True G229296
TU311129 lncRNA upstream 304930 21450463 ~ 21453152 (-) True G229351
TU311131 lncRNA upstream 304930 21450463 ~ 21453152 (-) False G229351
TU311122 lncRNA upstream 315543 21461076 ~ 21461460 (-) False slc38a2
XM_039792098.1 mRNA downstream 17305 21022335 ~ 21046386 (-) True pik3cg
XM_039792489.1 mRNA downstream 55456 20925173 ~ 21008235 (-) True ano2b
XM_039792490.1 mRNA downstream 55458 20925173 ~ 21008233 (-) False ano2b
XM_039792491.1 mRNA downstream 71903 20925173 ~ 20991788 (-) False ano2b
XM_039792470.1 mRNA downstream 422969 20620545 ~ 20640722 (-) True il15ra
XM_039791073.1 mRNA upstream 7668 21153201 ~ 21183826 (-) True slc13a4
XM_039791074.1 mRNA upstream 8044 21153577 ~ 21183856 (-) False slc13a4
XM_039792116.1 mRNA upstream 88721 21234254 ~ 21261702 (-) False LOC120553569
XM_039792115.1 mRNA upstream 88721 21234254 ~ 21261702 (-) False LOC120553569
XM_039792114.1 mRNA upstream 88721 21234254 ~ 21261702 (-) False LOC120553569
TU310933 other downstream 105471 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 941352 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1224389 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 1224389 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 1256593 19733102 ~ 19807098 (-) True G228934
TU311312 other upstream 625555 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 625603 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1959227 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2546488 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 2554164 23699697 ~ 23700198 (-) True G229907

Expression Profile