RNA id: XM_039791074.1


Basic Information

Item Value
RNA id XM_039791074.1
length 1968
RNA type mRNA
GC content 0.58
exon number 16
gene id slc13a4
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21153201 ~ 21183856 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGGTCCGACCCAGAGCCCCGGGTCCTCCATGAGGCTAGAGGCCGCAGCCAGGATGGATGTGTTCAGGAAGCTGTGGCGGGCGCGGAAGCTGATCGTCGTGGTGTTCATCCCGCTCTGCCTGCTTCCCCTGCCGCTCATCCACCCCACCAGCGAGGCATGCTGTGCATACGTGCTGATAGTGACGGCAATCTACTGGGTGTCTGAGGCTGTTCCCCTGGGTGCTGCTGCTCTGGTACCCGCCTTCCTCTATCCGCTCTTTGGGGTACTCAAGTCCAGCGAGGTGGCAGCAGAGTACTGCAAAGACACCACTCTGCTGCTGATGGGAGTCATCTGCCTGGCAGCCTCTATAGAGAAGTGGAACCTGCACAAACGCATCGCTCTGCGCATGGTGATGATCGCAGGGGCCAAGCCTGGCATGTTGGTGCTGGGCTTCATGTGCTGCACCGTGTTTCTGTCCATGTGGCTCAGCAACACGTCCACCACAGCCATGGTGATGCCCATAGCCGAGGCGGTCCTGCAGCAGCTGATCTGCACCGGCCTGGCCGACGGCCACGTAGACTCGGAGACCGCTGAGGCCCCTGAGGACGACAGCGCTGTTTCAGACAAAGAAGAGAACCTGGACAAAAACCAGCTGGAGTTGCTCTATCGCAACGACAGCGACTGCAGTAAACAGGAGCTCTCCACACTGAGTGAGGTGCAGACTGGGGAGGTGAATGGTTTGGCTCTGAAGGTAACCTCTAACCAGGAGTTCACCAGGGACACCAATGGATACCTGCCACAGgTTGCGGTGGAAATCCCAAACGTGAAGCGGGTGAGGGCCAGGAGAGACTCCCAGTATCCCACCAAGAGGGATCACATGATCTGTAAATGCCTGTCGCTCAGCATCACCTACGCTGCGACAATCGGTGGCCTCATCACCATCACCGGCACCTCAACCAACCTCATCTTTGCCGAGCAGTTTAACACTCGTTATCCAGATGCAAAGGTGATCAACTTTGGCACGTGGTTCATCTTCAGTTTCCCCATCGCCATCATCATGCTGGTCCTCACCTGGCTGTGGCTGCACTTCCTCTTCCTCGGCtgcaacttcAGGGAGACATGCTCGTTGAGTAAGAAACGCAAAACCAGGAGAGAGATGCTTTCAGAGAGGAGGATCCAAGAGGAGTACACCAAACTGGGACCCATCAGctaCCCAGAGGTGGTGACCGGTGTTTTCTTCATCCTGATGACTCTGCTGTGGTTCACCAGAGAGCCTGGTTTCGTGCCCGGCTGGACATCTCTTTTTGAGAAGAAAGGCTACAGGACCGATGCGACAGTGTCGGTCCTTCTGGGCTTCCTGCTCTTCCTCATCCCTGCCAGGCgacccttctcctcctccacttcctcctcctccagctgcaGGAACACAGATAATGAATCACATGACCCGCTGGCCCCCATGATCACCTGGAAGGACTTCCAGAGACTGATGCCATGGGAGATCGTCATCCTGGTGGGAGGAGGCTATGCACTGGCTGCTGGTTGCAAGgtgtcaGGCCTGTCGGTGTGGATCGGCAGACAGCTGGAGCCTATGAGTGGTCTTCCTCCGTGGGCCGTCACCCTGCTGGCCTGCCTGCTGGTGTCGGCGGTCACAGAGTTCGCCTCCAACCCGGCGACTCTCACCGTCTTCCTGCCCATCTTGTCAGCGCTGTCAGAGACTCTGCAAATCAACCCCCTCCACACTTTGATCCCGTCCACCATGTGCGTGTCATTCGGGGTCATGCTTCCAGTGGGGAACCCCCCCAACGCCATTGTCTTCAGTTACGGCCACGTGAAGATCAGCGACAtggTGAAAGCGGGCTTCGGGGTGAACCTGATCGGCGTGGCGGTGGTGATGTTGGCCATCACCACGTGGGGGGTTCCCCTCTTCAACCTGACAGAGTTCCCAGCCTGGGCCGTGGACAGGAACGTCACCGCGAGCTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310982 lncRNA downstream 91141 21019259 ~ 21062436 (-) True G229235
TU310983 lncRNA downstream 91141 21019259 ~ 21062436 (-) False G229235
TU310905 lncRNA downstream 286048 20867300 ~ 20867529 (-) True G229172
TU310901 lncRNA downstream 373669 20779683 ~ 20779908 (-) True G229168
TU310900 lncRNA downstream 374207 20779083 ~ 20779370 (-) True G229167
TU310999 lncRNA upstream 14612 21198468 ~ 21199259 (-) True G229248
TU311069 lncRNA upstream 80645 21264501 ~ 21264812 (-) True G229296
TU311129 lncRNA upstream 266607 21450463 ~ 21453152 (-) True G229351
TU311131 lncRNA upstream 266607 21450463 ~ 21453152 (-) False G229351
TU311122 lncRNA upstream 277220 21461076 ~ 21461460 (-) False slc38a2
XM_039791070.1 mRNA downstream 8044 21063691 ~ 21145533 (-) False ptprz1b
XM_039791069.1 mRNA downstream 8044 21063691 ~ 21145533 (-) False ptprz1b
XM_039791071.1 mRNA downstream 15092 21063691 ~ 21138485 (-) True ptprz1b
XM_039792098.1 mRNA downstream 107191 21022335 ~ 21046386 (-) True pik3cg
XM_039792490.1 mRNA downstream 145344 20925173 ~ 21008233 (-) False ano2b
XM_039792116.1 mRNA upstream 50398 21234254 ~ 21261702 (-) False LOC120553569
XM_039792115.1 mRNA upstream 50398 21234254 ~ 21261702 (-) False LOC120553569
XM_039792114.1 mRNA upstream 50398 21234254 ~ 21261702 (-) False LOC120553569
XM_039792113.1 mRNA upstream 50398 21234254 ~ 21261702 (-) False LOC120553569
XM_039792112.1 mRNA upstream 50398 21234254 ~ 21261702 (-) False LOC120553569
XR_005638087.1 other downstream 8044 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 195357 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1031238 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1314275 19811245 ~ 19839302 (-) False etv6
TU311312 other upstream 587232 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 587280 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1920904 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2508165 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 2515841 23699697 ~ 23700198 (-) True G229907

Expression Profile