RNA id: XM_039791078.1


Basic Information

Item Value
RNA id XM_039791078.1
length 3006
RNA type mRNA
GC content 0.51
exon number 6
gene id zgc:162331
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21183886 ~ 21219226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcggcggaccgagagagagagcggcgAGAGCACGAGCTcagggacagaggagaggagagggctgGAGGGGAAACAACAGCATCACGGCAGCATCATGAGTGGGAGCGCAGAGGGGGTATTCCTCTCTCCGCCAAGGGAGTGAGCAGGGAAGCAGACAAGAAGAGGAGGACAGAATAGAAGAAgtaagagaagaggagggaaggaaagggggagaggaaaagcagcagaggaagacagggaaaagaaaaaggaggaaaGGGAAGCACCAAACTTTCCCCTAAAGGGTCTTTTCACCTCATACTGAGACTCTGGTCGAGTCAAAGTACCCGGCTATGAGGCTGTGaatcctccttccttcctcttacAGAGCTCTTCTTCTTTATTACGTGACCCCATGTATCCCAAAGTTGGACCCACCGCTCAAAGCACAGGCACCCACCTCTGGATGCTGCTGTGCCCCCTGCTCTGTGCTCTGGTCCAGGCAAGGGGCTCCACTCTGAGCCCCGAGGACTCGCAGAGCACCGTTAGCGTGTCGCTGCCGGAGGACAGGACCGGCACGATAATCCAGCTGCAGCCAGACCTGCAGACTGAAACCCAGAtgccaacggaagcacagacaGAGACTCTGCCAACTCAGAGCAGCACCAGCAACTACACAGGTCTTTCCTGTATCCCTGTCCTGCCGCCACGTCGGGGCTCCTTCTACGTAGAGAGTGGCACAGGCGTGTCCATCGGCAGCGTGTTGGCCTTCTGGTGCAGGGAGGGATACCAGCTGGTCGGCAGCGACAAACTCTACTGCAACGTCAGGAACGGCAAAGCGCAGTGGAGCAACTACCTGCCTGTCTGCGAAGCGATCCCCAGGCCTGAGGACCGCGGTCTGAGAGTAGCTGTGTTGGCTTCAGTGGTGAGTGGCGTAGTCATCCTCACCATGTCCCTGTCCTTCCTCATCTGCTGCCTGCAGGAACGATCCAGTCGGGACCGAGCCAAGAAAGAGGGACGGAGCAGGCGCAGAGACAAGCGCTCGGCCCGTCGCAGCGAGTGTTGgctggagagagaagagggtgaATGGGAAAATTTTCCTCCTCCCAAAGTCTTCCATCTCtcccagaggatgaaccctCATCTGGCTCCAGACAGCCCCCTGTACCTGACTGGAGGGCTGAGTGGATATGAGAACAGAGGTTACCAGAGGAGTCAGGAGAGTTTGCTGAAGGCCTCCCTGCCCGGACTCTACCGCTCCGAGTCTCAGCTTTACCCGCACGTGGTCCTGCAGAGGGTCCCGACTCCAACGGCCCCCTCCGCCCCTCTCGCTCCATCCGCCCCCCTCTACCTCCacctcccctcttcctctgcctcctccccCGCCCACACAACTGCCCACGCTCAGCCTCACATCATGGCGCAGTATCCCACCCCGACGTACCCACCCCACCCCAACACGGCTGTGCCCGCCTACCGCCCAACACCGGCGCCTATctaccccaaccccaacccgaCACCACAGCGGCCATGGCAGTAGCTACGGCATGTTGTCCACAGTTTGGGGGCGCTGTGCCGTCCCTGCTGAAGAAGTTAAAGGGGACAGCTTCACAGGCTCGTTTTTGGAGACACATGAAGTCTTTTTCCTCATCCCTGTTTTCTCCCACCGAAGGCTGCAGATGCAAAGTTCCAAAGCAAGAAAAGGTGTCCAACTGGAGATGCAGCCAGTGTAGAAGCTCCCTCTTTTACTGCATGCTTGCTTGAACTTCTGCATTTTGGACTAAACAGGAACTGAACACATTTTTCTTGTCCTTAATTCTTGctgaactgctgctgctgctgctacactcTGCAAGAGGAGTGGAATAACTTTAGCTTTCCTTAAACCGTCAGAAATTACAAGAAAGCTTCAAGTAGTCGGTCGACAAGGGAACACAGGAAGTTCTACTTTAAGGTGTGCTAGTTCGGTTCAACCGTTGACGTTTTTTGAAGGATCTGAAGCATCATCAAGTACTCGGTCATGGCTGCCACTGTTTAGGCAGCTCAAATCTCTCagcagtttgttttttaatcgcTTATTGTTAAGAAAAGGATCCCTATCAGCCTTCCTGAGGTCCACATAATATACCATAATCTAATCTagacagatacagtatatatagagaTTTTAACATGAATTTCTGAATTTCTGAAATCTGATGTGTGATGTAACCAAAGGTTTCAGGTCACTttccagttctcattaatatgtCCTGGTATTTCCCCACACTGCATGGAGAACACGGACCGACACTGGGGCTTTAGGGGTAGCAAACACACTGTGATTAAAACGCTGCTGTTGCTGGAGCCAACTTTGTGCTGTTTGTATGGATTCAAGATACAGTGATCGTTTTAGATTGATCTTTTCTTTCTCACCAGAAGCGTTGACTGGAGTTTACTTTTCCCTGTCTGTACTGCCCATAGACTGTATGCTCCATCCGTCACAGTTATTTATGACGAAGGCTTGTTTTATGGACGGCAGTTTGACTCGAAAAGTATTTCAGCGAAGTCATTCAGGGCCCCTGATGGATTTTAGGAACATGTAGAACAGGAGCGGAGCCAGACGTTGTAAACAGTCAGGGCTCAGCACAAACTTTGGGGTTGGGGGTCCGGGGGCACTGCAGGCTTATTTGACGGCAGCTATGTGCACtatttttcaagccatttgataatagaatgagtaaaaatgtgtaaaaaaaacctgATAGTTGCCCAGGAAAAGAATCCTAGAGCCAATTTCCTATTTTGTATGTAAATGTCTCCACAACTAATGTTGGGGATAACTACTGCCACCTAAAGAGAGGCAACAAAGTCTGATGTTTctatttttaagttacataacATAGATAGGGAaggaatttggcgtaaacagcatTACTAATCTTGAAACATATTGTTAGTAGGGTTCACAGAATAAATTGCCGATGTTTCCCCAGTACTATGGACCTTCCattgtgtcctgaataaagtcGTTATTATTGGCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310964 lncRNA upstream 48225 21148293 ~ 21150281 (+) False LOC120553023
TU310941 lncRNA upstream 136071 21037948 ~ 21062435 (+) True G229205
TU310915 lncRNA upstream 273447 20923948 ~ 20925059 (+) True G229182
TU310845 lncRNA upstream 590976 20607232 ~ 20607530 (+) True G229130
TU310821 lncRNA upstream 633326 20563063 ~ 20565180 (+) True G229108
TU310977 lncRNA downstream 1222 21220448 ~ 21220812 (+) True G229233
TU311018 lncRNA downstream 45170 21264396 ~ 21264699 (+) True G229263
TU311019 lncRNA downstream 46186 21265412 ~ 21271111 (+) True G229264
TU311091 lncRNA downstream 209077 21428303 ~ 21429238 (+) False arid2
TU311140 lncRNA downstream 284418 21503644 ~ 21613229 (+) False G229352
XM_039791072.1 mRNA upstream 48155 21148267 ~ 21150351 (+) True LOC120553023
XM_039792300.1 mRNA upstream 139424 21047937 ~ 21059082 (+) True LOC120553657
XM_039792500.1 mRNA upstream 291685 20897219 ~ 20906821 (+) True LOC120553788
XM_039792498.1 mRNA upstream 333888 20817579 ~ 20864618 (+) False ntf3
XM_039791879.1 mRNA downstream 82194 21301420 ~ 21304922 (+) True fgfr1op2
XM_039792450.1 mRNA downstream 86388 21305614 ~ 21326282 (+) True tm7sf3
XM_039791778.1 mRNA downstream 157646 21376872 ~ 21428732 (+) True arid2
XM_039791832.1 mRNA downstream 214355 21433581 ~ 21452526 (+) False scaf11
XM_039791828.1 mRNA downstream 214356 21433582 ~ 21452526 (+) True scaf11
TU310736 other upstream 807100 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 1025107 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 1025107 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 1212858 19982248 ~ 19985648 (+) True G228924
XR_005638132.1 other upstream 1390094 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1504 other downstream 360087 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 360678 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 361026 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 361271 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1508 other downstream 361516 21580742 ~ 21580852 (+) True trnal-caa_29

Expression Profile