RNA id: XM_039791103.1


Basic Information

Item Value
RNA id XM_039791103.1
length 1948
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120553047
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3998734 ~ 4019042 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGCTAATTGTCTCGTGGTGGATCCTCTCCCTTCAGAGAGGTGGGTTTCTGCTGTCTGCTGCAAGAATCCTGGTTTTACTGGGACCAGAGAGGCTGAGAGCACTGGTTTTACTGGGACCAGAGAGGCTGAGcggactggttatactgggaccagagaggctgagaggactggttatactgggaccagagaggctgagaggactggttatactgggaccagagaggctgagaggactggttatactgggaccaGAGAGGCTGAGAGCACTGGTTTATACTGGGACCAGAGAGGCTGAGaggactggttatactgggaccagagaggctgagaggactggttatactgggaccaCAGAGGCTGAGAGCACTGGTTTATACTGGGACCAGAGAGGCTGAGaggactggttatactgggaccagagaggctgagaggactggttatactgggaccagagaggctgagaggactggttatactgggaccaGAGAGGCTGAGAGGACTGTTTATATTTTGTGTGGAGAATGAGCAGAGAAGTTGAACTTGGAGCAGATTGTGGAGAACTTTGTGGTGCACGAGACTCACAGGATGTTCAGACAGggcCTCGACAGGCTTGGGATTCGAACCAGCGGCGATAGCGAGCGGGGCTATAATGTTTGCCACAGCGAGGGCAGtggtctgcctgtctctctggtTGTCGGTGTGTCAGGTCCGGGGCGCCTACATCCCTGCAGAGATGAACGAAACCATCCAGGGCCTCTTGCAGCACTATACTATCCCAATTAAAGAGAGATTTAACCAGAAGCCGGTCTTCTCTCACGAGGCGCTGAATGGACAAATGGAGgGAAAGCGGGTGTTCATTGGAGGCGTTCTGGAGACGTACGAGAAGCTGATCGGCCAGATGTTGAAGCAGCAGCCCACCCCGACTCCCCAGACAGCCGGGAGCACCGAGCGTCCCGCCTCTGCCGGCGATGCAAATGTCAGAAAGGGGCTGAACTACATCTTGAAGAAGGTCAAGGAGCTGAAGAAACACCATTACAAGGAGCAAGAGAAGCTTCTGCAGGAGCTGAAGGCTCTCGAACACATCAAGCTGGATAACCGTGTGGTCCAGAGCAAAGCTTTGAGGGAGCTGCTGTGGCTGTACGAGGAGGCGAGCTCATTGAATGACGAAATcgagctgaggaggaggaggaggaggcgccGCCGCCAAGCTCGGAGGGTCAAGACTCATCCGAGAGCCTGAAACACCAACAATATGTCAACAATGACAGCAACAGGGATGATTAATGACAacaaattttaatttattaaaagaaattttaattttataataCCAAAGAATATCCAAATTTAAACCAGCGTgccaagtttttattttattttctaagaGGTTATTAAAGAggttatttataaataaatgtatatttattaCACCAGCAGCCTAAGCCTAGAAGATattgtaaatttttttaattcctgTATCTTTTAAAGGATGTTTGGAGCTCAATACTTGAAAGAAGCGTGACGGTTTGATCCTGTGAAATGTTTAACTAAAAGTCAGTCAACTCACTTTATCAATCACAATATTGATCAATTGCCACCTGGAAATACTTGATTTCTACTTATTTAAAAATGCTTATTTAATGCTCAGAAAATCAGCCAGATagaattataatatatttaactgTCAGCAGCTCAGGTTTTAAACATTACTCATATAGTACAAAGTACACAAGAGTTGAATACTGACATAAACTTAAATGCACTCTGAACATTTGGGTCCAGCACTGAAGTAGAAGTACTATACTCTTTAGgaatttttgtattttactgACATGTAATATTCtatttatgtttgtatttaAAGTGTATTTAATAATCGTAATTCTGTGACTGATGctaatttattgtatttattgattgGTACATGCAGAGCAATGCAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306123 lncRNA upstream 56307 3934316 ~ 3942427 (+) False G225707
XR_005638208.1 lncRNA upstream 59786 3935676 ~ 3938948 (+) False LOC120553793
XR_005638207.1 lncRNA upstream 59786 3936572 ~ 3938948 (+) True LOC120553793
TU306118 lncRNA upstream 63835 3885713 ~ 3934899 (+) False G225707
TU306119 lncRNA upstream 63835 3885713 ~ 3934899 (+) False G225707
TU306160 lncRNA downstream 22363 4041405 ~ 4041726 (+) True G225725
TU306161 lncRNA downstream 22363 4041405 ~ 4041726 (+) False G225725
TU306247 lncRNA downstream 119486 4138528 ~ 4140277 (+) True G225785
TU306253 lncRNA downstream 145387 4164429 ~ 4165021 (+) True G225790
TU306267 lncRNA downstream 193036 4212078 ~ 4212312 (+) True G225804
XM_039792078.1 mRNA upstream 110554 3882173 ~ 3888180 (+) True il22
XM_039792093.1 mRNA upstream 125415 3841996 ~ 3873319 (+) False mdm1
XM_039792091.1 mRNA upstream 125415 3841998 ~ 3873319 (+) True mdm1
XM_039792092.1 mRNA upstream 125415 3841998 ~ 3873319 (+) False mdm1
XM_039792094.1 mRNA upstream 132334 3841998 ~ 3866400 (+) False mdm1
XM_039791111.1 mRNA downstream 74618 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA downstream 74619 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA downstream 74619 4093661 ~ 4106590 (+) False LOC120553050
XM_039791116.1 mRNA downstream 136253 4155295 ~ 4175824 (+) True LOC120553052
XM_039792062.1 mRNA downstream 181630 4200672 ~ 4448037 (+) False LOC120553538
TU306138 other upstream 59780 3935674 ~ 3938954 (+) False LOC120553793
TU305947 other upstream 157560 3832746 ~ 3841174 (+) True LOC120553144
unassigned_transcript_1472 other upstream 464062 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 465073 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 466654 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1473 other downstream 167519 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 169127 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 169576 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 171187 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1477 other downstream 171634 4190676 ~ 4190786 (+) True trnal-caa_17

Expression Profile