RNA id: XM_039791111.1


Basic Information

Item Value
RNA id XM_039791111.1
length 2239
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120553050
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4093660 ~ 4107645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggcggggcATGACCTCGCCATTCTAGGGTGGAAAATTGGTTGCGATAACTTCTCAAGTCCGTCATGGCGGCTGGACGAGGGGAGTTTTTTCGGAGTTTCCAGGAATCTTTCGAGTCTTTGGAGAAGAAACCCACCCAGCCGGCTCTGGGTAGACGACAGCCGGTTCGTGGAAGAGGAAAGCCGGGTCCGGGCGGGATACAATCGGGTCAAACGGGCggaaagagaaggaagagaagacCAAAGGCAGCACCAAGCTCGGTTAGCGGGAATAGTCTCAGCTTTCCACAACCGAGACCAAAGGAAAATAAAGCAAGTTCTCCCAAAATAAAAACTTCTCCATCCAAGGAAAACTTATTGGAGAGGCTCCCGTCTGAGATTCTGGTTAAGATTCTGTCGTACCTGGACCCCTCCTCGCTGTCCTGCATCAGCCACGTCAGCAAGCTCTTCTACCAGCTTGCCAACGATGAaAACCTGAACGTGAGCTGGGAGCTGACGCTGTGTGATTATCGCGGGCGGGAGATCACGATGGAGCAGAGCCGAGCGTACTTCTTCGAGTCGTCCGTGGTCGTCCGCTGGAGTGGACCGAGCTTCCTCACATACCCTCAGATCAGCAGCATCCAGCTGTACGGAGTCCGGAAGGAGACCCTGAAGAGCCCCAAAGCCCGGAGGCCTGGCTGGCGCTCTCTGATCATAAAGCAGGACACCAGGGTTCCTGTTCGCTACATTGGCAAAGACAAACTAGTCAAGCTGAGGCATCTGCGGCCCTGCTTCCTCATAGGCACCTGGAGGGCTAACCACGGTATAGCCTTCATCATGGTCAGCCTGCACTTCCACAAGTTGGTGGAGAAGAGTCTCCTGGGATCTCCAGTCTGCCCGTTCTCGGAGCCTGTGGACCCCCCGCCCGCGGATAACTCGGACCCTGACTTTGGTCTGCACGGCTACACTCTGCACTTCGTCCTGCACAACACCGGCGCTGAGATCATGTCGGGACACTTCCGCGAGCTCTCCTGCCGCACAATTCAGATCCGGGCCGGACTGGTGGAGCTGAGGGTCATCAACCGGACCAACCTGTCCGAGCACAGACCGCTGTCTGGGAACATCAAGATGCCCTGGAAGAGCGAGGAACTGGAGGGCGTAGTGGAGAACTGCTGCATCGTATCGCTGACTCTGCTGGACGAGTTCCAGAAACCCTTCTGGTGCGTCAGCTCGCCCATTTGCATCATGATGGCCATGAAGCAGCAGTCCTTCGACTACAGCGGCGAGCACTTTGTGATGGATTTCAAAGACTCGGACGGTCAGGTGAAGATGAAACTGGTCTGGTTTAAGGAGCAGAAGCAGTTCTTCCTCATCAGCCTCACcgtctacatttctgtttggaaaatcaacaagcatTTCAGCCGAGCGTACTGAAGCAGAACTGGAGCGCTcgcaagttttggtttttaCAGTTCTGATGCAGTGACTTTGACGTTTTTGTTCAGTGTTACATCAGTTGTTTACAAAAATGTCCTACTTTTGTAGGCTTGTTTACGTATTTATCGTACAAAAATATTCTGTAAGAAGTGGGTAAAAGAGAATTAATTACAAGCTTATCCTGTTAAGGCTTCATGTTAAAAATTTTAAACTTCTAAAattctttatttgtattttgttcaCAATACAGGAAGTGTGTcactgtttttgtgtttctatTACACTTGTAGAATAAAAGTACAtgttatatgtaaatatatctgaGTAAATCCTAAGAAGAGGGttacattttaagtttgtttttaatttcagtATAAACTGAGTCATTTCAGTAAGTTATTTTGTTAGTTATGTTGTACAAAAGCAAGTCTCATTCTgtaaaaatggaaataaagaCAGGAGTTAATGCTGTTGAAGCTTCATGTGTTAGTCAGACAGTTGTCAgtagaaaaatacaaacaaatgtttggaagaaaagctAAAATGAGTTTGAGTTTTGTTCACAATACAGgaagtgtgtctctgtttttgtttctatTACACCTGAAGAATAAAGGTACATGTAATGTGTAAATATAAAGGATGAGATCCTGAAAAAGCACTTACGTTTATTTTGAATTTCCTTATTTACAGAGTACATATTCATTTCaagttattttagtttttgatCAGACATGGCAGAATTTCATGTTACTTACAAGCTGCTTTAAAAAGGGAaaactctttgttttttttctgctcagaaaataaatatttgtgtcacCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306149 lncRNA upstream 42537 3996965 ~ 4051123 (+) True G225721
TU306160 lncRNA upstream 51934 4041405 ~ 4041726 (+) True G225725
TU306161 lncRNA upstream 51934 4041405 ~ 4041726 (+) False G225725
TU306123 lncRNA upstream 151233 3934316 ~ 3942427 (+) False G225707
XR_005638208.1 lncRNA upstream 154712 3935676 ~ 3938948 (+) False LOC120553793
TU306247 lncRNA downstream 30883 4138528 ~ 4140277 (+) True G225785
TU306253 lncRNA downstream 56784 4164429 ~ 4165021 (+) True G225790
TU306267 lncRNA downstream 104433 4212078 ~ 4212312 (+) True G225804
TU306268 lncRNA downstream 163148 4270793 ~ 4271236 (+) True G225805
TU306270 lncRNA downstream 201462 4309107 ~ 4309388 (+) True G225807
XM_039791103.1 mRNA upstream 74618 3998734 ~ 4019042 (+) True LOC120553047
XM_039792078.1 mRNA upstream 205480 3882173 ~ 3888180 (+) True il22
XM_039792093.1 mRNA upstream 220341 3841996 ~ 3873319 (+) False mdm1
XM_039791116.1 mRNA downstream 47650 4155295 ~ 4175824 (+) True LOC120553052
XM_039792062.1 mRNA downstream 93027 4200672 ~ 4448037 (+) False LOC120553538
XM_039792061.1 mRNA downstream 93173 4200818 ~ 4448037 (+) True LOC120553538
XM_039792060.1 mRNA downstream 93173 4200818 ~ 4448037 (+) False LOC120553538
XM_039792065.1 mRNA downstream 93173 4200818 ~ 4448037 (+) False LOC120553538
TU306138 other upstream 154706 3935674 ~ 3938954 (+) False LOC120553793
TU305947 other upstream 252486 3832746 ~ 3841174 (+) True LOC120553144
unassigned_transcript_1472 other upstream 558988 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 559999 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 561580 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1473 other downstream 78916 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 80524 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 80973 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 82584 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1477 other downstream 83031 4190676 ~ 4190786 (+) True trnal-caa_17

Expression Profile