RNA id: XM_039791116.1


Basic Information

Item Value
RNA id XM_039791116.1
length 2451
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC120553052
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4155295 ~ 4175824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGAGGAGGGGTGAGCCTGGGAGCGATACACTTTCTGTTGTTAACGCACTTATTTCGACTCACATTTAGTAACTGCAGGGctagttgtattttacgtgCGGAGGAATAAATCATTACAATACAACCTGGAGCGCGTCACGGTGTGATTACGCATCTCTCAGTGTTTGGTGTCTCgcggcagcactttgttggactgcGAAGAAGATCAGGTgtaggaaaggaaaggaggggcacagggaaggaaaggaggaagtGAGAGGAAACCGGTAAAGCAGGGTAGGTCTGTGTAGTAGCCCGAGGGAGTCTCTCTGCCCACTCTGTAGGAAACTTGTCTCTGTTGAAGCGAGTCGTGAGCCAGAAGCTGCTGAGAACGAAGGAATTAAGGACAACCAAAAGCCATGGCTGTGAATAAATGCATCAAAtacctcctcttcttcttcaacCTTCTTTTCTGGcTTAGTGGATGCCTCATCCTGGGCGTGTCCATCTACCTGAAAGTCGGCAAGGCTGGAAATCAGATCACCAGTAACTCTCTCCCCGGCGTGGACCTGCTGATCGCCATCGGCGTGATCATCATGGTGCTGGGCTTCCTGGGCTGCTGCGGAGCCATCCGAGAGAACCGCTgcttgctgctgctgTTCTTCATCAGCCTTctcatcatcttcatcctcctggtGGTGGCGGGCATCCTGGGAGCCGTGGGGGAGAACAAGGTGAATGACTGGGCGAAAGAGAATCTGGATAAACTCACCCCACTGTCATCACAACAGGCTAGTGTGCAGAACGACATGCAGGAACTGCAGCAGGAGTTGCAATGTTGTGGTCTGCTGAACGGAGCATCCGACTGGGGTGTAGGTCCTGCCCCCTGCAACTGCAACGCCACTTTAACTGCAAGTGTCTGCAAGTCCACCCCCATCTTCACCACGCCCTGCGGCACCAAACTCATCAGTTTGATACAGAGCAACTTGACTGTGGTGCTGGGCATCGCCTTTGGAATCGCCCTCCTGCTGATTTTCGGCATGGTCTTCTCCATGATTCTCTACTGTCAGATTGGCAGAAAGGATGGCGCCACTTCCACtgcctgaacacccacacatgGCCACGCCCACTCGCTGCCTGGCAACAGCCAATTAGCAGAGTGCAAATGACCCATTTAACACATAACCTCAGTGCTAATGTATCTTAACCTGTGCTTTTACTGTGGAGGAACACGCTGATATTTTGGTTGAAATATCATGATGTTAATAGAGTTAATACACATGTGGTGTGTACTGTATGGAGTCTCAATCGTGACAAAAGTTCAATATATAAATATCTTGAGCAAACATGAGAATTTCTGCTTCTTGAAGGTGTTAAATTAACCAATAAGATATTGGGGGAGTAAAATAAATGGGGTTTAAaattaacttaaaaaataaaaaagtttggtTCTTTTAAACAAATGTGTTTCTACCCGAAATATCAGTGTGTTCCTTTAACCTTACAGCAAACCTGTGATAAttatcacttctttttttcttttttaccaaacaaacaaatccaAACATTAGTCTTTCTTTCCGTTCACAATGTGGCCTCAAAGAACAAAATCTATAAACATTGTCaaaacaatttgtgttgtctggGGCTTATTTCGATGGAAGCCAATTACCCccaaaatcaaatcaataaaTACACTGTTAggtatggttaaaaaaaatgtcattagtATCTGTATGATTTATACATAAGTCAATATTATGACATCTTCTCATAATTATGATACATTCTCTAAAAATGTTACTTACATATTCGTAAATCTAAAATTACATAAGTTTTTTTCTCGAACATTGTGTTaatatagttgtttttttgctcttttctaTATGTAAACTGTCAACTTTTTTTGAAAAGTCCTGAATCATAGTTTTCTTACGATTTCTGCCATGCCTTATTTTGTATTTGATATTTAATTTGTATCGTATGAAGGAATGGGCTTCCATAGCTTTATGTCCAAAAATATACTGCCATAGCTGTCTGTCACAACATCTGCTGCCATTTCTGATAAATGTTCCAAAATAATCCTTATGAAGTTAAAGTTGTGGTGTGTTCCTGTGTTGTTCCGTTTATAACTCCATAAACCTTTtagaaatacaagaaataattaaataatattgCCATTATAAAGCCTTAACTTCCATATATATATTCAACCACATTGTTATATTACTGTTTAACTTATAATCGTGTTATAAAAGTGAAAGTGGTTTAATACTGTGGAACAGACTTCACCTGTTCACTCGGAATCTCATTGCTGTTGTCTTTGTCATTTTTACGGCACTGTCTGAAAACTGTaaggatgtttttatttttgtttttgtccctgAGCTGAGTTTAGTTTGAGGACAACATCAAGTGTCATACTATCCTGCTTGAAGAAGGGAAATAAAAACTACTGAATTAAAATAACA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17349 TSPAN8; tetraspanin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306247 lncRNA upstream 15018 4138528 ~ 4140277 (+) True G225785
TU306149 lncRNA upstream 104172 3996965 ~ 4051123 (+) True G225721
TU306160 lncRNA upstream 113569 4041405 ~ 4041726 (+) True G225725
TU306161 lncRNA upstream 113569 4041405 ~ 4041726 (+) False G225725
TU306123 lncRNA upstream 212868 3934316 ~ 3942427 (+) False G225707
TU306267 lncRNA downstream 36254 4212078 ~ 4212312 (+) True G225804
TU306268 lncRNA downstream 94969 4270793 ~ 4271236 (+) True G225805
TU306270 lncRNA downstream 133283 4309107 ~ 4309388 (+) True G225807
TU306265 lncRNA downstream 274236 4450060 ~ 4453432 (+) True G225802
TU306315 lncRNA downstream 297787 4473611 ~ 4475015 (+) True G225842
XM_039791111.1 mRNA upstream 47650 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA upstream 47650 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA upstream 48705 4093661 ~ 4106590 (+) False LOC120553050
XM_039791103.1 mRNA upstream 136253 3998734 ~ 4019042 (+) True LOC120553047
XM_039792078.1 mRNA upstream 267115 3882173 ~ 3888180 (+) True il22
XM_039792062.1 mRNA downstream 24848 4200672 ~ 4448037 (+) False LOC120553538
XM_039792061.1 mRNA downstream 24994 4200818 ~ 4448037 (+) True LOC120553538
XM_039792060.1 mRNA downstream 24994 4200818 ~ 4448037 (+) False LOC120553538
XM_039792065.1 mRNA downstream 24994 4200818 ~ 4448037 (+) False LOC120553538
XM_039792064.1 mRNA downstream 24994 4200818 ~ 4448037 (+) False LOC120553538
TU306138 other upstream 216341 3935674 ~ 3938954 (+) False LOC120553793
TU305947 other upstream 314121 3832746 ~ 3841174 (+) True LOC120553144
unassigned_transcript_1472 other upstream 620623 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 621634 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 623215 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1473 other downstream 10737 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 12345 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 12794 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 14405 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1477 other downstream 14852 4190676 ~ 4190786 (+) True trnal-caa_17

Expression Profile