RNA id: XM_039791123.1


Basic Information

Item Value
RNA id XM_039791123.1
length 2975
RNA type mRNA
GC content 0.53
exon number 9
gene id pdzrn4
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15554225 ~ 15591288 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TggtgaagaagagagagagtgttagGCATGCAAGTGAGATTCAAGGGAAGGAGTGACAGGCAAGAGGGAAAGAGAAGCGAGGTGTTTTTACTCATCTTACCACTGatacactccccacacacacagaaactgaAGGAACTACATCCACAACATCTACTAAAGCAGTGAGCTGATacacgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcccgcgctcggagcgacagaggggaTCTCTGAGGATACACGAATGAGAAAGAGGAGTGGGGGAGCCAAGGAAGAGGAGCCCGAGTGTGTTTCGCCCCAGGgggagctcacacacacaccgtagACAGCACGCACACTCCAGCGGGCACTCTGCACTGTTTCCCTGACAACTAGAATGGGCTGCAATTTGTGCACCTTGCAGAAACGGGAGGAACACTACAAACTGCTGTATGAGATTGCACAGGTGAACGGGCGCAACTTCTCCAAGGTCGACCATGAGGAGGCAGTGGTGGAGGCCATCAGGCGAGACCCCATCGTTGTCCAGGTTCTCCGGCGAACCCCCACCAGATCCACGGACGCTGTTGGACATAACTACAGCGGCACGCAACAGGACGTGTCTGTGGTGGATGTTTGCACGCAAACTGACATTACCTTCGAGCACATCATGGCACTGGCGAAGCTTCGGCCTGCTACTCCGCCCGTCCCCGACATCTGTCCCTTTCTTTTGTCCGACAGTTGTCATTCCATCCACACCATGGAGCATGAGTTTTATGAATGTCCAGAGTACCTGTCCAATATCCCAGCAGAGGTGGAGAGGACTGAAGAATATGAGTATGAGGAGGTGGAGCTGTGCAGACAGAACAGCCAGGAGAAGCTTGGCTTGACGCTGTGCTACAGGACCGACGATGAGGAGGACACCAGCATCTATGTCAGCCAGGTGGAGCCGAACAGCATAGCAGCAAGAGATGGACGCATCAAGGAAGGAGATCGAATTCTACAGATAAATGGCTGTGAAGtgcaagacagagagaaagctgTTGCCTTGTTGTCAAGTGAAGAAGCAAGGAGCATCATACTACTGGTGACAAGACCAGAAATCCAGctggaggaggaggtatGGCTGGATGATGAGCAACAGGAGCTCGTGGATGAGCTGAAGATGGAGAtcctggaggagaggaggaagcagAAGGAACATAAATTTGACAGGGGAGATGAGCATCTAGGTGAAGAAGACATAACAACAGACACAGCCACCTGTTCCTCCAACAATCAAGACAAAGACAGTGGGTTTGGACGCAGTACAGACAGTCCAGAGCACCAACCACTGCTGGCTAGACTCCACAGGAGGACCCCAGCCCACTGCCTGAGGGAGCGATGGCGGGCAGAGCATCCACACACAAGACGGGGGACTGTAGTGCCACAGAACACCCAGAGTCCAAGGACATTGTCCAAAGGCCAAGGCCATGAAGGGGTAGTCAGTATTCACAATGGTGGAGGCGGGATCCTAGGTTTAGAGAATCGCTTTGAGCAACTCCTTGAGCTCAAGTGTCAAATCCGGAATGGAGGCGAGTGTGGGGTGTACTCAATTCGACACAGTATAGAGTGTAGTCTCACTGAGCATGGAGTGGATGAAGATGGCGTAGATGGTGTTGGAGGAGAAAATGGAGTGGAGCAGGAGTTGAGGATGCTAAATGAGGAACTGCGCAGCATTGAGCTTGAGTGCCAGAGCATCATGCAGGCGCACCAGCTCCGCCAGGCACACCAGCTGGACCCCTCACAACCCGCGTCCTGCTCGCCAGGACGGAGCCCCAAAAACGAACACAAGCGACATGGCAGGTTAGCCGACATCCACGAGTACCCGGAGCGGTCAGACATCGACAGGATCCGAGAGAAGGACAGCTCCAGTGCCTACAACACGGCGGAGAGTGCAAGGTCGACACCACTAGGTATGGAAAGATCTCCTGATCATTCTCTGCAGAGACACATCAGCATCACCAACCAGAAAAACCTCAGACTGGCTTCCTCCACACCATCCAGCCCCATCCATATCCCCAAGCCCCAGGGTACACCTAGTCATAGCAGACCAGCAGACCCAGGCTCTGTTATCTCCAGCAGCCCAGACCAGAGCAACCCTTCCCGGTCCGAATCAGACCCTGCCCTGCCTGCAGACGATGAGAGGTGTAAGAAGAAAGGGAGGACCAGAGATTCTAGGAGGGGGCTTCCATATGGTTCTTATCAGACAACCCCCTATCAAGGCCAGGGAGGATCCAGGCAACTGCAGAGCTACATGCAGCTGCTACAACAGCACTCATCCCTGGAGTATTCCCAGAGCCAGCTGAGTCTGCTCAGTGTCTGTCGAGATCCTGTGCACCGGAACGGACGCCCTGGGGAACCCCGTTTAGAGTGGAAGGTCAAGGTTAGGGCTGACGGCACACGCTACGTTGCCCGGAGGCCTGCTCGTGACCGCATCCTGAGGGAGCGGGCACTAAGgatcagagaggagaggagcggAGGCATGACCACAGATGACGACGCTATGAGCGAGATGAAGATGGGCCGCTACTGGagcaaagaggagaggaagcagCACTTGGCGCGAGCCAGGGAGcaaaggaagaggagggaaTTCATGCAAAAGAGCCGCCTCGAGTGTCTAAAGGAGGGGCCAGCCAGTGGAGCTGAGGGCAGGAAAGAGATCAATATCTTGGAGCTCAGTCACAAAAAGATGATGAAGAAACGAAACAAAAAGATCCTGGATAACTGGATGACCATCCAGGAGCTGATGAGCCATGGGGCTAGAGTCCCGGAGGGCTCCAAAGTACATAACGCCTTCCTATCTGTCACAACTGTTTAGCGGACCCATACAATACTGAACACTTTAAGATCCGGTAGCCTGCATTTCAGGAACTACtgctaaatgtaaaaaaaaaaaaagtctgtttgtaaaattcaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309501 lncRNA downstream 22786 15531131 ~ 15531439 (-) True G228120
TU309482 lncRNA downstream 43443 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA downstream 43443 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA downstream 43443 15499836 ~ 15510782 (-) True G228111
TU309475 lncRNA downstream 60808 15492354 ~ 15493417 (-) True G228109
TU309647 lncRNA upstream 624827 16216115 ~ 16224149 (-) True G228221
TU309734 lncRNA upstream 944730 16536018 ~ 16536293 (-) True G228283
TU309741 lncRNA upstream 1155455 16746743 ~ 16747040 (-) True G228290
TU309755 lncRNA upstream 1233541 16824829 ~ 16831239 (-) True G228295
TU309834 lncRNA upstream 1323319 16914607 ~ 16949806 (-) True G228360
XM_039791544.1 mRNA downstream 62938 15472275 ~ 15491287 (-) False pphln1
XM_039791542.1 mRNA downstream 62938 15472275 ~ 15491287 (-) False pphln1
XM_039791543.1 mRNA downstream 62938 15472275 ~ 15491287 (-) False pphln1
XM_039791540.1 mRNA downstream 62938 15472275 ~ 15491287 (-) True pphln1
XM_039791541.1 mRNA downstream 63249 15472275 ~ 15490976 (-) False pphln1
XM_039791365.1 mRNA upstream 84339 15675627 ~ 15689322 (-) True cntn1b
XM_039791366.1 mRNA upstream 98817 15690105 ~ 15746414 (-) True nrcama
XM_039791836.1 mRNA upstream 159776 15751064 ~ 15760526 (-) False pnpla8
XM_039791835.1 mRNA upstream 159776 15751064 ~ 15760494 (-) False pnpla8
XM_039791834.1 mRNA upstream 159780 15751068 ~ 15759726 (-) True pnpla8
TU309380 other downstream 465896 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 492796 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1744546 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1894953 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 2024447 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 179950 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1157554 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1703834 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2239384 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2239384 17830672 ~ 18100995 (-) False tafa5a

Expression Profile