RNA id: XM_039791141.1


Basic Information

Item Value
RNA id XM_039791141.1
length 4747
RNA type mRNA
GC content 0.47
exon number 3
gene id zbed4
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17576138 ~ 17583883 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTTCCGTCCGACGCTGTGTGGAGCTGCTTCGGCCGAACGTGAACTGCTAGCAGACAAAAGCAACAAAGTGAACCCCCCTCCGGATCAATCAAATGTGTCATATTTAACTGTTTAGGAACCGAAAACCTAGTGATCACACCGTCATACTTCACAGTTGTGTGGGGAGAGGTGGGACTACTTCAGTCATAAATGGAGAGGGACAAGCAGGCACCCTGTGTCCCGGGCAGCCACACACTCATCACAACACCTGCTTGAGCGCTGCAGTGTCGATGACTACACCTGAAAAAACAAATTGCTTTTGACAACGCAGACCTGACTATTCTACAGAAACCCTTGGTCTGCTGCCATGgatggggaggaggaggtgtctCACAAGCGTGAGGATACGGATGACAAACCGTTGGAGTCGGACAAAGCAAGTGAGACTGACCCAGCTTCCCCCACCCTTTCAAACAAATGCCTAAACACTGATACGGAGGGAAATACGGAGAATGAAAATTATGAAAATGGAAGCGAAGCAAGTCAACATATCAAAGAGGAGACTGGGGATGCAAACGGAATGGATGAGGATACCCAGGACGATGAAAGGCTAGGATTCGGTAGCTCCGTTGGCCCTTTTGTAACTAGAGACGGTGAGGAGTATAGTAATTTACTAAGTGGATACACAAGCACCCTTTATGATGTTGCCATGGATGCTGTCACTCAGAGCCTTCTGTCATCTATGAGGAGTAACACCAACCCGAGGAAAAAATCTCCTGCGTGGAATCATTTCTGCATATCACCACGAGACAGTACCAAAGCAATCTGTTTATACTGCATGAAAGAGTTCAGCCGGGGTAAGAACGAGAAAGACCTCAGTACAAGTTGTTTAATGAGGCACGTACGAAGGGCTCACCCCACTGTGCTTTTACAAGACGGAGCAGACGCATCCTCAAACAATCTGACTAGCTCCCTCGCCTCATCTTTGATACCTCCATCCCCAAACTCACCAAAAAACGGAGACTTGACCAACAGCGTCATTTCTTCTGCCTCAAAGAACACTTCACCGTCCACCTCCTCAGCTGAAAATTCAGATCTTGCATCCAAAGAAGTGTTACCCAAAGTTGAACCAAAACTAGAACTGTATGCCAACACTGAGGCCGTTTGCAGCACGCTCTCCTCCTCACATTCCAATGACAACAACCTTGAAGATATGTCAGACGGTGGGCCTGAGCGCCTCCCTGGGACCCCAAAAAGCTCAAGTTCCCGTCGGAGGTCCGCTGTATGGAAACACTTCTACCTGTCACCTGCTGACAATTCCAAAGCAGTATGTATCCATTGCATGAATGAATTCAGCAGGGGTAAAAATGGGAAGGATCTAGGGACGAGCTGTCTTATTCGCCATATGTGGAGGGCCCACAAAGAGGTTGTCATTGAGGAAAATGGACAGGGCAATCACATTCCCCCACCCTATACAAACCCGCCTTCACTACTGTCCCGCACTCATCTACACGATCCACTGGAAGTAAAAAAAGAATCGCCCCTTCTTCCATCCTCACCAGAAACCATATCAGATGAGTTACCCCAAAGCATGGGGGAAAGCATGGATATAAAAGAGGAATCTGATGAGGTGATGCATCTCTCAGGGCAGGAATCCTCTCTCAATCTCTCCTTCAAAACCCAGGGGGAGGATACACCTCTAACTTCCTCGCCATGCGACCTCTCTGAGGGCCCCAGCCTCAACCAGGATCATTCAGTTTTCCAGCAAAACAAGAAGATCATGAAACGGGTGAAATCGGAAGTGTGGCACCATTTCATAGTGTCCCCAGTGGACCAGTTGAAAGCACTGTGCCGTTACTGTCCGTGTGTCATCAGTCGAGGGAAACGCGGCGACTTTGGTACAAGCTGCCTGATGAGGCATCTGATGAGACGCCACCCAGACGTCCTCAAAAACCAAAAAAGCACAGATGAGAAGGAATCCTCCCCTCATCCTTACACCAATCTCGCCGCAACGGACGCAGTTTCAACCAAAGAAACTGAGAGCCCTGCCAGCGAGAAAAAGCCCCAAACACTGCCCGTTTTCAGTAAAAAGACGTCAAAACTGTGGAACCATTTCTCCATTTCGCCCACTGACCCCACAAAGGTGGTTTGTTTGCACTGTGGCCGCACAATTAGCAGAGGCAAAAAGACTACAAACCTTGGCACAAGCTGCCTCTTCAGGCACATGCAGAGGTTTCATGGACATGTTCTTGAAAGTAACAATACTATCTCAGGTGATGTGCCGTCTGCTGAAATTCACGTTAAGCAAGAGCTCATGGACACTTCCGTTTATGAAACGGAACAGAGCCGTGAGAGGTTTGATGAACGCCACCCGGTTGCCAAAAGAATCACCAAACTACTCGCAGAAATGCTCGCACTGGATCTTCAGCCATCAGCTATGGTGGAGAATGCTGGACTCAACAGACTGCTAGAGTACCTCCAGCCTCAGTATTCTCTACCACCTTCTTCCTACTTTACCAGCACTGCCATACCAGACATGTACGAACGGGTGAAGGACGTTGTGCTGACCCACCTGAAAGAGGCTGAAGGTGGCGTTGTCCACTTCACAACGAGTATTTGGGTCAGCAGCCAGACAAGGGAATACCTGACCCTCACTGCCCACTGGGCAACGTACGAGTCAAGTGTCAGGCCCCAGGGTCAGGACTTCCACTGCTCTGCTCTCCTAAGTGTCTCGCAAATAGACTGTGATCATGATATGCATGACATCCCAAAGCAGCTGGAGTATCTGTGGGATTCCTGGATCACGTCATCAGGGCTGAAAAAGGGGTTCACTGTGACAGATAACACCACCATCAGAAACACTTTGGAGGACCACGGCCATGTCACCATGCAGTGTTTTGGACACACTATAGACCTCATTGTTAGCGAAGCCATAAAGAGCCAGAGAATGGTTCAGAACCTTCTGAGTATCGCACGCAAGATCTGTGAACGCGTGCACCGCTCGGCAAAGGCCAAGGAGAAGCTGGCCGAGCTCCAGAGGGTGCACCAGCTGCCCGAGAACCAACTCATTCAGGACGTTCCTTCCAAATGGAGGACCTCCTTTTTCATGCTGGAGCGGCTGGTGGAACAGAAGAAGGCCATCGACGAGATGTCGATCGAGTGCAATTTCAGGGAAATGATCAGCTGCGATCAGTGGGAGGTGATGCTGTCGGTCTGCAATGCACTGAAACCGTTCGAAGTCGCCTGCAGGGAGATGAGCAACCGCACTGCCACTCTGGGACAAGTGATACCACTCATTCACATCCTCAACAGAAAGATAGACCTGCTGTTTGATGAAACCGTGGGCATAGACAACATGCTCAAGTCCCTAAAGGAAGCCATGGTGAGCAAAATGTCGGCCACTCTGCACGACCCGCGAAACACCTGGGCGACCATGCTGGACCCACGATACAAGACGTCGCTGTTCACCGAGGAAGAAGCCGAGCAATGCAAACACGATCTGATCCGGGAGCTGGACTTGTCCTCGACCGCCTCCGTCGAAGCTCAGCCTCCGCTGCCCAATGGCTGCAACGAGACCCCCCTGTCGTCCAACGCCTCCCACCCAAACGAGGACAACCTCTGGTCCCTTATGGCCGACATCAGACAAAAGATAAAACACGAGGAGAAGCCAAAGTCCTCAGAGCTGGCAGTGCTGGAGTACCTCGAGGAAGACATACTTGATCAAAGCTGTGACCCCCTCGACTATTGGAACCTGAAAAAGTTCCTGTGGCCCGATCTTGCCAAAGTAGCCGCCCGTTACGTGGGCTGCCCTCCCAGCATCGTCCCAGCAGAGACACTGTTCAGCACAGCTAGTGTCAACTGTGCCCTAAATCAGCCCAGGCCTTTACTGGAAAACATGGAGGGTCTACTGTTCCTCAAAGTCAACCTCCCTTTGATTTATTTTCAGTACTGATTATTGCTGAGCATTAACTTAAACCCTTTATCAAGGACCAAGTTGCATAGCTGTGAAATGGGGGTTTCTGTTGggcaaaatgtaaaatattgatttataCACTGATTCTCACTGCAAAGGCCGGATTTggaggttttattttattctgtgtACTACTGTTAAAACACTTGGAGCTGTTGTGATGAAAAGTCTCAGTCAAAAGTGTATCAGGGAGGGAGGGTTTTTCTAGCTGTAGGGGTTGGTGATAATGTCGTTTGCTTGtaaatcaatgtttttgttttctgtgtctACTCTCTCCTTGTGCCTTATTCAGAACTACTTCAGGTCAAAATGCTGTAAATATTTAGTTAAATTGCGCAGATCACGTCAGGATGCTTTTTGATTATTGTGTATTAAAGATGGACAGAGTTGTTTTCGGAATGATGGCCCAGAAATAAATGCTGTGACTGAAAGATGTTTTAAGTTAATGTTATTTAATTTTCATTGTGAATTTGTGGCTCATGGTACTGTCATTTagatagacttttttttttttttacttgctgaaatgtttttaataagATCATGTATAATATTGCTGTATTTTCAGAATAAGCAGTTTGTTTGGAATATACAATTTGTCTCTTAAGCACAATTTAAGTTTATGTCCAGGGGATTAAATTATGGGTTTATTATTGAGTAAAAcgatgtactgtacatttttatattaaatgacTTCTGAACCTAATTTGATAAATGTTTTAGCATTGAGACTGGACCCATGCAAATGTTGTGgtcatttttaaataaaggttttccTTATGCAATATCTAA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638072.1 lncRNA downstream 173306 17402248 ~ 17402832 (-) True LOC120552976
TU309981 lncRNA downstream 300661 17272948 ~ 17275477 (-) True G228474
TU309936 lncRNA downstream 332158 17243465 ~ 17243980 (-) True G228439
TU309917 lncRNA downstream 353910 17221205 ~ 17222228 (-) True G228423
TU309887 lncRNA downstream 437863 17137270 ~ 17138275 (-) True G228401
TU310251 lncRNA upstream 720702 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA upstream 721677 18305560 ~ 18311747 (-) False LOC120553191
TU310249 lncRNA upstream 779376 18363259 ~ 18369744 (-) False gramd4a
TU310257 lncRNA upstream 972170 18556053 ~ 18558509 (-) True G228684
TU310256 lncRNA upstream 974718 18558601 ~ 18559279 (-) True G228683
XM_039791144.1 mRNA downstream 5490 17565571 ~ 17570648 (-) True creld2
XM_039791853.1 mRNA downstream 244760 17306223 ~ 17331378 (-) True LOC120553454
XM_039791154.1 mRNA downstream 341445 17222334 ~ 17234693 (-) False trim24
XM_039791152.1 mRNA downstream 341446 17222334 ~ 17234692 (-) True trim24
XM_039791151.1 mRNA downstream 341463 17222334 ~ 17234675 (-) False trim24
XM_039792281.1 mRNA upstream 246733 17830616 ~ 17978041 (-) True tafa5a
XM_039792282.1 mRNA upstream 246733 17830616 ~ 17927879 (-) False tafa5a
XM_039791347.1 mRNA upstream 550201 18134084 ~ 18270751 (-) True tbc1d22a
XM_039791348.1 mRNA upstream 550201 18134084 ~ 18270751 (-) False tbc1d22a
XM_039791423.1 mRNA upstream 779805 18363688 ~ 18421404 (-) False gramd4a
TU309971 other downstream 273940 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 752706 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1784285 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 2487809 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 2514709 15060003 ~ 15061429 (-) False znf800b
TU310227 other upstream 246789 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 246789 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 785792 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 1854634 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 1859349 19443232 ~ 19443314 (-) True trnal-cag_19

Expression Profile