RNA id: XM_039791147.1



Basic Information


Item Value
RNA id XM_039791147.1
length 2687
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC120553073
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20537056 ~ 20544945 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAAAGAATGTATTTTACTTgtacatatctatctatctatctaattgcatgctgtatatatgtaaagtttgaatatatggaatgaaaagaaaatgtaatctatatatgttataaaaaaggcCCATAAATAATTAACTGCAGCTACTAAGATTTGTAATGCCGAGTGCATGACCGATTTCTGCTCTAATCCCTCTGGTATAGTGTAGAAATAACTTCAATAGGGGCTGTATTTCTTGATACAGGTTCACAACTCCCACCCATTTCGCTTACCTTTGTATGGTaccatttcattttctcaacAAGACCATTGGTTTGAGGATGATAAGGGGCACAAAGGCTTCTTTATATCCCAAGGAATCAGTGTTGATCTGAAATACATTTATCTCACTTTACAAATGGTGAATTTTCAAGGGACTGATGGTATTTTATTTTGCCCCCACAAATTATTGTTGGTAGCTACATTGCAAGTAGGTTTATTTTACCTGATTTACAAAATCCTTCCCCTGGTCTGTAAGGATCCTCTTGGGAGCCTcaaactggtaaaaaaaaaaacaatttgaggATGCAGCCAGATACCTCTTTAGCCGTTTTTTGTTCTAAGAGGGTAAGCTTGTGCCCATTTGGTCAGGTAATCAATCATTACACAGATGTAACTGTATCCCTCTGTAGTCACAGTCAGCTTCCCTATCAGGTCCATGCCAACAAGCTCAAATGGATGCGTCACCTAAAAGACATATAGGTGACTGTCAGGTGAACATCAAGAACAAGGAATAGGACATGACTGGACAAGTGAGATAAGTGGGATAAACGACAGCAAGGGGAAAGACAGACCAAGGGGAAAATACCAAAAAGACACTAGACAGATGGGCGAGGTGAATAAATCAGGAAAtataaaggattttttttttcttacagtgaTTGGTGTGTCCTCCTTGATTTGAGCTCCACTGGCCTGGCAGTGCACACACTGGGCCACCTGAATGAAGAAGATttaaaaacacagagagacagaccgtttttaacagttttattcAACAAGTATTTCAAAGATGTTTGGAGAAAGCAACTTGCGGCCAAGTCACCGCACGTATGATATAGGTGACGAGGATCCTCTCATTGAAGAGCTCAGCAAAGCAATGGCCAGACTTTCTGTAAGTGGACCGACTGAGCTAGCGTCCAGGTCCTCCAACAGCCGCATATCCAATAATAGGGGGTCCACCGAAACCAAAGAGGCCCAAGTTACCGGTCGCTCCAGGGCCGTTGAAGGGAGGATTCCACCTGAGACCAAAGACAACATCAGTACCCCTTATGATATAGGTGACGAGGATCCTCTCATTGAAGAGCTCAGCAAAGCAATGGCCAGGCTTTCTGTAAGTGGACCGACTGAGCTAGCGTCCAGGTCCTCCAACAGCCGCATATCCAATAATAGGGGGTCCACCGAAACCAAAGAGGCCCAAGTTACCGGTCGCTCCAGGGCCGTTGAAGGGAGGATTCCACCTGAGACCAAAGACAACATCAGTACCCCTGTGAGGACAATCCAGTACCCCTGTGAGGCCATTCCAAAACCTTCCCCTAAAAGGGGATTGGAGGATCTGGAATCGGCCAGTATCGGAAGGCCAGACAGCCTCGGtccagagaggaagaggagaagagtggACACAGCGACAAGAAGGAAGGCTTCCTGGGTGAGTGTTCACGCCAGAGCTTTTCGAAGGAACTATATTAGTGCCGTTTGTTCCAAGGCCATTCAAGAGAAATCGGTGAGGGTCAAGCAGACTTTGCCACGTGAGGTGGAAGAGCAGACTGTAACAGAAGGCTTGACGGGCACAGAAAAACCCTCCCATAAAAGGAAATGGGAAGATTTCAAATCAGCCGGTATCAGAAGGCCAGACAGCCTCGGtccagagaggaagaggagaagagtggACACAGCGGCAAGAAAGAAGGCTTCCTGGGTGAGTGTTCACGCCAGAGCTTTTCGAAGGAACTATATTAGTGCCGTTTGTTCCAAGGCCATTCAAGAGAAGTCGGTGAGGGTCAAGCAGACTTTGCCACGTGAGGTGGAAAAGCAGACTGTAACAGAAGGCTTGACGGGCACAGAAAAACCCTCCCATAAAAGGAAATGGGAAGATTTCAAATCAGCCGGTATCAGAAGGCCAGACAGCCTCGGtccagagaggaagaggagaagagtggACACAGCGACAAGAAGGAAGGCTTCCTGGGTGAGTGTTCACGAACACGTTCGGGCAGACGGTGACGTTGTTATGGTTGCCATGCCAAAAAAGACAACTACAACCAGAAGGAATAACATGAGACGCTGTGCGAAGGGACGTGGAGAAAAGACCTGGAGAGGAGGGAGCAAGAAGACAAAGCATGACGTGAGgTCATGCTTTGACAAAAGGGGAAACACTGGACCAAAAAAACCCAGCACCCCACTTTACCGTCTGAGACCCTTTCACCAAAGAAAGCAATATGGACCACCAGGCAGAAGAAACCCACAAAACATGCGTTTGCAGGGCCGCCGTCAGTGGGCAACACCAGGACCGATGTGCCGGGCCCCGGGTCGGGGGAGGGCCCAAAGTGTCCCTTGGCCAAACAAGTCCTGGGCACGAGGAAGACACACGGACCTGTGTGTCACTGTCACTTTCTAAAtcaatgaaataaatgtaattttttgtcTTCCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU310809 lncRNA downstream 255 20536573 ~ 20536801 (-) True G229096
TU310808 lncRNA downstream 1459 20535285 ~ 20535597 (-) True G229095
TU310788 lncRNA downstream 86928 20442320 ~ 20450128 (-) False G229079
TU310789 lncRNA downstream 86928 20442320 ~ 20450128 (-) True G229079
TU310783 lncRNA downstream 99520 20434155 ~ 20437536 (-) True G229076
TU310812 lncRNA upstream 1948 20546893 ~ 20547497 (-) True G229099
TU310822 lncRNA upstream 4553 20549498 ~ 20549724 (-) True G229109
TU310866 lncRNA upstream 81134 20626079 ~ 20627508 (-) True G229140
TU310883 lncRNA upstream 123713 20668658 ~ 20668886 (-) True G229154
TU310893 lncRNA upstream 136147 20681092 ~ 20683865 (-) True G229162
XM_039791833.1 mRNA downstream 6312 20455675 ~ 20530744 (-) True camk1da
XM_039792012.1 mRNA downstream 106560 20410195 ~ 20430496 (-) False optn
XM_039792011.1 mRNA downstream 116179 20410195 ~ 20420877 (-) True optn
XM_039791001.1 mRNA downstream 127380 20394066 ~ 20409676 (-) False mcm10
XM_039791000.1 mRNA downstream 127380 20394066 ~ 20409676 (-) True mcm10
XM_039792468.1 mRNA upstream 5089 20550034 ~ 20564985 (-) True cdc123
XM_039792470.1 mRNA upstream 75600 20620545 ~ 20640722 (-) True il15ra
XM_039792475.1 mRNA upstream 75600 20620545 ~ 20638101 (-) False il15ra
XM_039792473.1 mRNA upstream 75600 20620545 ~ 20638101 (-) False il15ra
XM_039792472.1 mRNA upstream 75600 20620545 ~ 20638101 (-) False il15ra
TU310704 other downstream 414717 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 697754 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 697754 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 729958 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 1084028 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 412712 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 518746 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1226143 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1226191 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2559815 23104760 ~ 23239573 (-) True G229716

Expression Profile