RNA id: XM_039791149.1


Basic Information

Item Value
RNA id XM_039791149.1
length 7110
RNA type mRNA
GC content 0.53
exon number 29
gene id kdm5a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17237935 ~ 17260868 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGTATAACGTTTCCGAGTGTTGTTGAAGGCACCATAACAGCTATCCAACCTTGCTAGTTGTAGCTAGCACGTTGGCTAATGCGGATACAATACATACAGACGACGTTAAATTATACGGAAAGGGACACCCTGTAAAACAAAGCAAAAGGATTATAGCCTCTTTTCTATGTGATTCCGATTAACCTACTAAAGCCATGACGGACTGTCCTGCTCAGCTGACTTTCTCAGCAAACATCAATGTTAGCTGCGCAATGAGTAGCGGTCGCTAAGCTGATTTTAGCCAACTAAATTAGCTGCATGCTAGTTTTCCATAGCCTCAATTGCTTCAATGAATGGGGGTTTACGCACGGAGTGAAGACATCAGTCAACAATGTACGCTTGGTAATAGCCTCCTCCTTGTTGTGGTCCAGCTTGGCTGGTATCAGGTGCTCAAAGAAGTGGACGTGAAGACTAGCTAGAGTTTTTATTGAAGCCGGACGAGCGAGCCTAattacgttagctagctagctaactaatgaACATTAACGTTACCAGCTAGCCACAGGACCGTGGATAACTTTGTTGGAAATGCACCATCACGAAGAAATCATGCACTACCCAGGTACATAGACTTAGCAATAGCAATGATAGCTTGCGTAACGTTAACATAATATTACAACCAACATTGGAAGGATAAAGCCGgggtgtttttgtttacaaacttcttttcaaattatgtgattgtCCCTGGCCCAAGTCTCCACTGCAGAGCTGTTTTTTGTGTGAAGTTTTCATCTGTGAGAGAAGGAATGATGGCGTTTCGGACTAACCCAGCCCTCCGTCCCAGGTAGAGGAGTGGTGGTGAAGACTCCCCGGCCTTGCTTGGCCCGCTGTTTACGGACGATGGGAAAACATTGATCATTAGCAGCTCGGTTGTTGTATTAATGCATTCACTTTCAAACCAGATTATGATACTCCATCGCGACTGGGATGCCCTGACGTTGAAGTAATTGGTTAGCTGGGCGATTTAAAGGATCACGATGGACACGGAGGAAGTTCCCCAAGACGACAATTATTGGAAATAGTCATGGACTGTTGAGCTCAACTcggtgcatttttttttatcagatattatttttaaagactGTTTTACTGGCACCACACCAACATGTCTGCATTTGCTGAGTTCGTCCCACCTCCTGAATGCCCGGTTTTTGAGCCGAGTTGGGAGGATTTCTCGGATCCTTTAGGATTTATCAACAAGATCCGACCCATTGCAGAGAAAACGGGCATCTGCAAGATTCGACCCCCCGAGGATTGGCAGCCTCCGTTTGCTTGCGATGTACGCAACTTCCGCTTCACTCCTCGAGTACAAAGACTTAATGAACTGGAGGCCCTCACTCGGGTTAAGCTCAACTTTCTGGATCAAATCGCAAAGTTCTGGGAGCTGCAAGGATCTAAGACCAGATTTCCTCATGTGGAGAGAAAAGTTTTGGACCTCTATCATCTCAGCAAGATTGTGTCCTCAGAGGGCGGCTTTGAGAACGTGTGTAAAGAGAAGAGGTGGTCCAAGGTGGCTAGCCGGATGGGCTTCCCAGCTGGGAAAGGCACCGGCTCACTGCTGCGCTCCCACTATGAGAGGATCCTTTATCCATATGAACTCTTCCAGTCTGGGGCCACGCTGACTGGCATCCAGCGGCTATACGAGGAAGGGGATGATGTGGAAGAAGTGGATGAGGGAGTTGGTGAGGAGGCAGTGGAGGATGAGGAGCAagatgaggaggatgaggaggataaGGAGAAAGATTGGGAGGGCGATGCTATGCAGACCAAGGAGCGGCTTCTGCCTGAGAGACGCTCCAGGCGCCTTAAGTCTGAGAGGGAAAACAAGGAGCCAAAAGGCCTAAAGATCTTTGGTACAAGTCCCAAGATGGTCGGCTTGGAGATTGTATCAGCTGATgatggattcaacaggaagcagcGTCACCTCAAAGCCCAGGCCTTTGCCATTAAAATGAGACCACGCAAGGAGACCCTGGAGGTCAACTTTATCCCCCAGATCGACCTGTACCTCTGCCTGGTGTGTGGCCGGGGCGATGAGGAGGACCGGCTCCTGCTGTGTGACGGCTGTGACGACAGCTACCACACCTTCTGCCTGATCCCACCTCTACAAGACGTGCCCAAGGGGGACTGGCGCTGCCCTAAGTGTGTTGCTGAGGAGTGCAGTAAGCCCAGGGAGGCATTTGGCTTCGAGCAGGCGGTGAGGGAGTACAGTCTCCAGAGCTTTGGAGAAATGGCTGACCACTTCAAGTCTGACTATTTCAACATGCCTGTTCATATGGTCCCCACAGAGTTGGTGGAGAAAGAGTTCTGGCGCCTGGTCAGCAGCATCGAGGAGGATGTCATCGTAGAGTACGGAGCAGACATTAGCTCCAAGGAGGTGGGCAGCGGGTTTCCTGTCAGGGACGGTAAAAGGAGGCTACTGGGAGATGAAGAGGAGTATGCCAACTCAGGCTGGAACCTGAATAACATGCCCGTGCTGGAGCAGTCGGTGCTCACCCACATCAATGTGGACATCTCGGGTATGAAGGTGCCCTGGCTCTATGTGGGCATGTGTTTCTCTTCATTCTGCTGGCACATCGAGGACCACTGGAGTTACTCCATCAACTTCCTGCACTGGGGTGAACCGAAGACTTGGTACGGCGTGCCGGCctctgcagcagagaagctggaggCCGTTATGAAAAAGTTGGCTCCAGAGCTGTTTGACTCCCAACCTGACCTCCTCCATCAACTGGTCACCATCATGAATCCCAATGTCCTCATGGAGCATGGTGTCCCTGTGTACAGGACCAATCAGTGTGCAGGGGAGTTTGTGGTGACCTTCCCCAGGGCCTATCACAGCGGCTTCAACCAGGGCTACAACTTCGCAGAGGCTGTTAACTTCTGCACTGCTGACTGGTTACCTATGGGTCGTCAGTGTGTGGCCCATTACCGACGCCTTCACCGCTACTGCGTCTTCTCCCACGAGGAGCTGCTGTGCAAGATGGCTGCTGACCCAGAGAGTCTTGACGTGGAGCTAGCTGCTGCCGTCTTCAAGGAAATGGGAGAAATGATGGAGGAGGAGACAAAACTCAGACAGGCTGTCCAAGAAATGGGGGTGCTGTCCTCAGAGCAGGAGGTTTTTGAACTTCTACCTGACGATGAGCGCCAGTGTCACAAGTGCAAGACAACCTGTTTCCTGTCTGCACTGACCTGTTCCTGCAGCCCTGACCGACTGGTCTGTTTGACCCATGCAGCAGATCTCTGTGACTGTCCACTCGGCAGCAAGTGTCTTCGGTATCGCTATGATCTGGAGGAGTTTCCGTCCATGCTGTATGGGGTCAAGACACGGGCTCAGTCTTATGACACGTGGGCAAAGAGGGTCACAGAGGCTTTGGCTGCCGACCAGAAAAACAAGAAAGATCTTATTGAGCTCAAGGTTTTGCTGGAGGATGCAGAGGACAGGAAGTATCCGGAGAAAGCTTTGTTCCGTCGCCTGAGGGAGATGGTCAAAGAGGCGGAGACGTGCTCCTCCGTGGCTCAGCTGCTGCTCAGCCGCAAACAGCGGCACAGCAGCCGTCTGCGTTCGGAGAGCAGTCGTAACCGTACCAAACTGACAGTGGATGAGCTCAAGGCCTTTGTGGATCAGCTGTATAGGCTGCCCTGCATCATCAGCCAAGCACGACAAGTCAAAGAGTTACTGGAGAATGTGGAGGACTTCCACGAGCGAGCCCAGGTGGCACTGTCAGACGAGACGCCTGATTCCTCCAAGCTGCAGGCACTGCTGGACCTGGGCAGTGGCCTGGATGTAGAGCTGCCAGAGCTGCCCCGACTGAAACAGGAGCTCCAGCAGGCCCGCTGGCTTGATGAGGTGCGTGTCACCCTGGCCGAGCCTCACCGCGTCACCCTGGAGCTGATGAAGCGGTTGATAGACTCTGGGGTGGGCCTGGCTCCCCACCACGCTGTGGAGAAGGCCATGGCCGAGCTGCAAGAGATCCTCACTGTCTCGGAGAGATGGGAGGATAAGGCCCGCGCCTGCCTACAGGCCAAGCCTCGACACAGCATGGTTACCTTGGAGAGCATTGTGCTGGAAGCTAGGAACATCCCAGCATACCTACCTAATATTTTGGCCCTCCGAGAGGCCCTACAGAAGGCCAAGGAGTGGACATCTAAGGTGGAAGCCATTCAGAGTGGCAGTAGCTACGCTTACCTGGAGCAGCTGGAGAGCCTGCTGGCCAGGGGTCGCTCCATCCCTGTCCGGCTTGATCCACTGGCCCAGGTGGACTCTCAGGTGGCTGCAGCTCGAGCCTGGAGGGAGAGGACTGGTCGCACCTTCCTCAAAAAGAACTCCACATACACACTACTCCAGGTCCTCAGTCCTCGCGTGGACATCGGGGTCTACGGCAACAGCAAGAGCAAGAGGAAACGCGTCAAGGAGCTcttggagaaggagagaggaggcttTGACCCTGACGCCCTGAGCGACCTGGAGGAGAGCCTCGAAGAGGTGCGAGACCCTTCCACCGTCGTAGCAGCCTTCAAATCCAAAGAGCAGAAAGAAGTGGAGGCCATCCACTCACTCCGGGCTGCCAATTTAGCCAAGATGGCCATGGCAGACCGCATCGAGGAGGTCAAGTTCTGCCTGTGTCGAAAGACGGCCAGCGGCTTCATGTTGCAGTGCGAGCTTTGTAAGGACTGGTTCCACGGCGCTTGCGTGCCTCTGCCTAAGACGGGCTCTCAGAAGAAAGCGGGTGTGGGTTGGCAGAGCAATAGCAAAGACTCCAAATTCCTGTGTCCGTTGTGTCAGCGGTCGAGGAGGCCGAGATTAGAGACCATCCTGTCGCTGTTGGTGTCGCTGCAGAAGCTGCCGGTGCGTCTTCCAGAAGGAGAAGCCCTCCAGTGTTTGACAGAGAGGGCAATGAGCTGGCAGGACCGTGCGCGTCAATCTCTGGCCACGGAGGAGCTGTCCTCAGCCCTGGCAAAGCTGTCTGTGCTGAGCCAGCGCATGGTGGAGCAGGCTGCTAGGGAGAAAACTGAGAAGATCATCAACGCCGAGCTGCAGAAAGCTGCCGCCAACCCGGACTTGCAGGGCCACATCCAGACTTTTCAGCAGTCAGGTTTCAGCAGAGCCGCATCCCCTCGCCAGTCCGTAGACTACGATGACGAGGAGACCGACTCAGACGAGGACATCAGGGAGACCTACGGTTATGACATGAAGGACCCAGGCGAGGTGAAGCCCTACCTGTTCTGTGATGAGGAGATTCCTGTTAAGTCTGAAGAGGTGGTCAGTCACATGTGGCCGGCTGCCACGCCCTCCTTCTGCGCCGAACACGCCTACTCATCAGCTTCCAAGTCCTGTGTGCAAAACATGGGAACGCCCAGAAAGCAGCCCAGGAAGACCCCTCTGGTACCTCGCAGCCTGGAGCCGCCAGTGCTCGAGCTGTCCCCGCAGGCTAAGGCCCAGCTGGAGGAGCTGATGATGCTGGGAGACCTGCTGGAGGTGTCCCTGGATGAGACCCAGCACATCTGGAGGATCCTACAGGCCACGCACCCCCCCTCTGAGGAAAGATTCCTGCAGCCCGACGACTCTCTGATGGAGAAGCCTCTGAAACTCAAGCTGAAAGATTCAGAGAAGAAGCGGAAACGGAAGTTGGAAAGAGCCGAGCACCACCACATGCTGATggctgccgccgccgccgccggaGGGGCTTCAGTAATGGGCGAAATGCGACCAGCCAAATCCAAAGAGCTTAAAAGGGTGGGTCTGGAACTGGGTCTTGGGGGCAAACCCAAGAAGAAGAAACTCAAGCTCAACCTCGACAAGAACCGGGAGATGAAGCAGCTGGCCAAGCGGTTAGCcaaggaggagaaggaaaggaagagaAAGGAGAAGGCAGTGGCCAAGGCAGAGGCCATCAGGGATGGGctggagaagaggaaggagaagaagatTCTTGACATTCCTTCCAAGTATGACTGGTCCGGTGCTGAAGACTCCAACGACGAGAATGCTGTGTGCGCGGCCAAGAATTGCCAGAGACCCTGTAAAGATAAGGTGGACTGGGTGCAGTGCGACGGCGGTTGCGACGAGTGGTTCCACCAGGTGTGCGTGGGCGTGTCGTGCGAAATGGCCGAGAACGAAGACTACATCTGCGTGGACTGCTCCCGGAAGGCTGCCGGGGCGAGCGGCGGAGCCGTGACTGTGGAGGAGGTGGCAGAGGAGAGCGTCGTAGTGCTGTCGACATCGATGTGCAGCGTGCAGAGTCTGCCATCATCGTCTGTCGTGGCCTCGTGGTCTCACCCGTCCTCCGTCTCTCATCTAAACCCAGCAGCttcacatcatcatcagcatCAGCAAGAGCCTCAGCAGGGCAGTTAGCGCTTACAAAAAACAGCCTAGGACTGAGTTTGAATGCTGTACCTCACACAATGAACACAAAACCTAGCATTCAGGCTAGTGTTTCAACCTCTCAAGCTGTAagactgtacagtatgtgagggggaaaaaatagCCCTTTTATGAATAAGCTTGGAAGAAAAGGGACAAACCAGGCGCCTTTCTGTAACTGCTTGGATTATAGAGcacaagaaagaagaagagaagagtcCTACTGTCACCATGTGGCTTCAGCAATGACATGTTCTCTCTCCGAGCGCTAAGATCTGTTGAAAAGGTtgttagtacacacacacacaatacataagtCTTCCCACAGCAGTTTTAGGTCTAAAAAAACATCCACCAGCTACTTCTGGGCTTTCTCCTGAACACTAACACATCTTTGGTATACTTACTTTCAATCAAACAAACACCCACTTGCTCCAGCTGTTGTATTCGGTGAAAACAGGCAAATAATGTGTCCCCAGTCGTGTTTTACTGGACATCCTGAATCCCTCCCCTCTGCCCTCTGCCTGGCCCTTCAGACAGTAACATCTCAATATGTAGGACTCCAGACTAGAAAACACAAATGGTTGTAATGTAGTGGAATTATTTATAATGTACATACTtttaagcatttaaacaaatggATTGtggctttttgttttgttttctcaccTTTAATAAACAATTCCTAGTCAAATGATT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309875 lncRNA upstream 32295 17187926 ~ 17205640 (+) True G228392
TU309867 lncRNA upstream 99584 17137271 ~ 17138351 (+) True G228384
XR_005638158.1 lncRNA upstream 117351 17119099 ~ 17120584 (+) True LOC120553376
TU309855 lncRNA upstream 122592 17113825 ~ 17115343 (+) True G228375
TU309854 lncRNA upstream 126585 17109768 ~ 17111350 (+) False G228374
XR_005638182.1 lncRNA downstream 38855 17299723 ~ 17301020 (+) True LOC120553531
XR_005638205.1 lncRNA downstream 341324 17602192 ~ 17790439 (+) False LOC120553790
XR_005638203.1 lncRNA downstream 341325 17602193 ~ 17790439 (+) False LOC120553790
XR_005638204.1 lncRNA downstream 341326 17602194 ~ 17800247 (+) False LOC120553790
XR_005638202.1 lncRNA downstream 341326 17602194 ~ 17790439 (+) False LOC120553790
XM_039791156.1 mRNA upstream 498 17234012 ~ 17237437 (+) True LOC120553078
XM_039791798.1 mRNA upstream 41078 17188186 ~ 17196857 (+) True wnt7ba
XM_039791799.1 mRNA upstream 41078 17188186 ~ 17196857 (+) False wnt7ba
XM_039791558.1 mRNA upstream 205213 17021892 ~ 17032722 (+) True LOC120553296
XM_039791556.1 mRNA upstream 232621 17000945 ~ 17005314 (+) True cdkn1d
XM_039791155.1 mRNA downstream 1778 17262646 ~ 17275457 (+) True LOC120553077
XM_039791966.1 mRNA downstream 15145 17276013 ~ 17297654 (+) True LOC120553489
XM_039791967.1 mRNA downstream 15145 17276013 ~ 17297654 (+) False LOC120553489
XM_039791969.1 mRNA downstream 15145 17276013 ~ 17286914 (+) False LOC120553489
XM_039791968.1 mRNA downstream 23891 17284759 ~ 17297654 (+) False LOC120553489
TU309802 other upstream 315112 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 406692 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 406692 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 2040105 15168604 ~ 15197830 (+) False LOC120553256
TU309001 other upstream 3233086 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1495 other downstream 329223 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1269297 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2149622 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2198215 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 2371079 19631947 ~ 19808412 (+) False LOC120553210

Expression Profile