RNA id: XM_039791151.1


Basic Information

Item Value
RNA id XM_039791151.1
length 3418
RNA type mRNA
GC content 0.54
exon number 20
gene id trim24
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17222334 ~ 17234693 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCTGGGTAAAATATGGTATGTGTTTTGAGCAAAGAATGCACAAGTCGCCATGGACATATGAGCTTCAAAATACTATATTGATTGATCGGGAAGCAGCCGAAAAAAATGGATGAAAGTGTAGAAAATGTTGATAACGACGACATTGTCATTATCGTGGAAAACGAGGCAGAAAGTTTGCCAGCCGAGGAAGAGAGGCTGAAACAGCAAGGTACCTTCGGGCTCATGGACACTTGTCCTATCTGCAAGTTGAGCTTCCACAACCGAGAGCCCAAACTCCTACCGTGTCTTCACTCTTTCTGCAAGAGGTGTCTCCCGGCCCCCTTCAGGAGTGCTGATCCGAGGCGTGACTCACAAGGCCAAGTCGACCACAACAAATCACTGGGTGCCATTCGATGTCCAGTATGCAGACAGGAATGCTGGGAGATAGACATGTTGGATAATTTCTTTGTCAAAGACTCTGCTGAGGTGCCGAGCAGCACCGTGGAGAAAACCAGCCAGGTGTGTATGAGCTGCGATGACAACACCGAGGCAACAGGTTACTGCGTGGAGTGTGTGGAGTTTCTGTGTGTGACATGTATTGAGGCGCACCAAAGAGTCAAGTTCACCAGGGATCACACCATACGCCAGAAGGAGGAGATGTCTCCAGAAGCATTAGGTATGTCCACACAGAAGCCTGTGTTTTGTGACATCCACAAGCAGGAGCCACTGAAGCTGTTTTGTGAGACGTGTGACCGACTCACCTGTCGGGACTGTCAGCTGCTTAAGCACAAGGATCACAACTACCAGTTTTTGGAGGATGCATACAGGAACCACAAACAGTATCTGGAGAACATGACGCAGCAGttgcaagaaaaaagaaaggccATTGAGGACATGTCCAGCTGTATCAGCACTGGaCTCCAGCAAGTTGAAGAGAACCGGAAGGCTGTCACTAATGAAATAAAGAAGTCTATCTGTAACTTGATTATGGAGATCAACAGGAAAGGAAAGATTCTGGTTAACCAGCTTGAGGCTCTGACTAAGGACCATGAGCTGGGTTTAAAAAAGCAGCAAGAGGACGTCAACTGTCTGACCAGGCACCTGGACCATGTCATCAGCTTTACCAAATGGGCTACAGCCAGCCATAGTGGAACAGCCCTCCTGTACTGCAAGAGACTGATCCTTTTTCAGATCCATTACCTGATGAGAGCAAGCTGTAATCCCTCCATCGTCCCTCAGAGTTCTGTGCGCTTTCAGTGTCGCTCTGGTTTCTGGGCCACAAATGTAGACCTTGGTTCTCTGGTTGTGGAAAGGGGTCCGGGCCGGCCGCCCATCACCAACCACCAGGCCGGTCCCAGAGCAGAGGCACCCGCTGGAGCTCTTTCAGTTTCAGCTCAGCAGCGACAGAACACGCTGGCTCAGCTCCAGCTGCAGGTGGACAAGCTTTCCCAGCAGCCTCACAGGCATCCTCCTCCTAACCATTGGTCCTGGTACCAAAATGTCAGGCTCCCTGGACCCCCAGGACCCCCAGGACCCACCGGCCCTCCAGGACCTCCCGGCCCTCCACCCGCAACTAGACCCATCCACGGCGGGTCGTCCCCCTCCCAAGGCTTGGGACAGCCAGGACGCAGATACGGGAGCTCCCACCCCAACACTAGAAGCCCCACATCATCCATGCATCACAACACAGGATACCCAGCTGCTCAGTCTCTGAGAGATCTGATCCAAAGCTCTAGCTTCCCTCCTAAACCCATGGATGTGTTGCAGGGTACGTCTCGCTACCCACAGCCTCTGTCTGCCGGAGCAGCTACACAGATGTCACTGCATCAGCGGGGCCCAACGGAGTCCTCCTTCCTGAAGAGGAGTGAGACTGGTGGATCTGtcccctccatcaccatctctATTCCCAAACCCAGCTTTGCTCCAAGTCTAGCTTCAGCACCTGCGGACAAAACAAGCACATTTAATCACATAGCAGTTCAAGTAAGGCAGAAATCCCCGATGGCCAAACCATCTTCTTCAGACAGAAGCACAGGGACGACGTCCTGGAGGCAGACTTCTGAACCTCCATCTGCCCCCTCAGCCAAGCGACGGAGAAGGTCGTCCCCGGGGCCCGTCATCGTCATCAAAGACGAGCCAGAGGATGAGGATGAAGTTCGATTTGTGCAGTCCAGCGTAGGGTCCAGCCTGCCGGACAGCAGCACCGGGGCTCAGTCAAAGCCTCGGCAGCAGCTAAAGGTGTCAGTGTCAGTCCCAGTCCCAGTCCCCGGATCGGAGTCTGGGAAAGAGCAGCGTCCGCAGCCCGCAGCACAGCCAGAGTCCGAGAAGAGAGCGGAGCCGGAGGAAGATCCTAACGAGGACTGGTGCGCCGTCTGTCAGAACGGAGGGGAGCTGCTCTGTTGCGACAAGTGTCCCAAAGTCTTTCATCTGGCCTGCCACATTCCCGCCCTCAATGAGTCTCCCAGCGGGGCGTGGTTCTGTTCGCTCTGCCGAGACCTCGCCTCTCCTGAGATGACGTACGACTGTGACGGCAAGGATGACCCCATCTCTGAAGGATGCCCACCTCTTGAAAGAAGGAGGTGTGAGAGGCTGCTACTACGTCTGTTCTGCAATGACTTCAGCACTGACTTCCAGCAGCCTGCTACTCCATCAGAGACAAAAAGGTACAAAGAGCTGATCAAGACTCCGATGGATCTCTCGATAGTCAAGAAGAAACTGGAGTCCAAGTCGCAGGAAGGTGAATGCTATAGTAGCCCGGATGAGTTTGTCGCAGACGTCCGCCTCATATTTTTCAACTGTGCAAAGTACTACAAGGCGACCTCAGAAGTGGGGAGTGCAGGCTTGTACTTGGAGGACTACTTTGAGGAACAGTTGAAACTAGTCTACCCAGATAGGGTCTTCccgggagggagggaagagcaGATGATCCCTCCTTTGGAGGACGAGATAGATGAAGAGGAAGAGATGATGGACGAAGGCATGGCTCCCATTGAAGACGATAAACCACAAAGCCCTGCGGAAAACGGAATCCCGCCTGTGGAAGAGGACTTGCCGCCTCTGGAAGAAGCGGCAGTCCCGGCAGAGGAAGAAAAGTCGGAAACAGAGGAGAAGGTGATTGATACGAGTGAAAAGGCGGCGGATGAAAAGGTTGCAGCCGTGGAAGGGGACTTGCCCCCCGCAGAGGAGGCAAAGCAGGACGAGGAGACTCCTGAGAAGGAGCTGGAAAGCTCCCCAGCTGCCGATAgtgaaacaaaagacaaagtaGCCCCCAGCTCCCCAAAAGAGGAGAGCCCTCAGCTCCCTACAGACACGCCCGCGGATCCAGCTGAAACCCAGGAGAAGGAGTCAGCTCCTGCAGACACAGccaaagaggaggagggataGATGGATTACAACAGAGAGAAACTGTAGAAAGGATGGATGATTTCagtttttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309917 lncRNA downstream 106 17221205 ~ 17222228 (-) True G228423
TU309887 lncRNA downstream 84059 17137270 ~ 17138275 (-) True G228401
TU309843 lncRNA downstream 212744 17007945 ~ 17009590 (-) False slc37a3
TU309844 lncRNA downstream 213353 17007749 ~ 17008981 (-) False slc37a3
TU309837 lncRNA downstream 215334 17004002 ~ 17007000 (-) True G228363
TU309936 lncRNA upstream 8790 17243465 ~ 17243980 (-) True G228439
TU309981 lncRNA upstream 38273 17272948 ~ 17275477 (-) True G228474
XR_005638072.1 lncRNA upstream 167573 17402248 ~ 17402832 (-) True LOC120552976
TU310039 lncRNA upstream 282988 17517663 ~ 17600185 (-) True G228522
TU310251 lncRNA upstream 1069910 18304585 ~ 18346997 (-) True LOC120553191
XM_039792328.1 mRNA downstream 1977 17212648 ~ 17220357 (-) False LOC120553673
XM_039792327.1 mRNA downstream 1979 17208626 ~ 17220355 (-) True LOC120553673
XM_039791800.1 mRNA downstream 14880 17196941 ~ 17207454 (-) True atxn10
XM_039791719.1 mRNA downstream 87204 17116753 ~ 17135130 (-) True pparaa
XM_039791082.1 mRNA downstream 105881 17114008 ~ 17116453 (-) True cdpf1
XM_039791853.1 mRNA upstream 71548 17306223 ~ 17331378 (-) True LOC120553454
XM_039791144.1 mRNA upstream 330896 17565571 ~ 17570648 (-) True creld2
XM_039791141.1 mRNA upstream 341463 17576138 ~ 17583883 (-) False zbed4
XM_039791140.1 mRNA upstream 341463 17576138 ~ 17583883 (-) True zbed4
XM_039792281.1 mRNA upstream 595941 17830616 ~ 17978041 (-) True tafa5a
TU309744 other downstream 398902 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1430481 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 2134005 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 2160905 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3412655 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 60447 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 595997 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 595997 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1135000 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2203842 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile