RNA id: XM_039791161.1


Basic Information

Item Value
RNA id XM_039791161.1
length 4319
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120553085
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21816182 ~ 21827934 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAACTTGTTTCTTCGTGAATGGAATGTAGACAGATTCACTCTTATGAGAAACTGATAATAGGGGCAGGATGAACAAAGCTGCTGTTTAGTATGTGCTGTGACGGTGCTTTAGTGAGCTCGGCGGAAAGTGAGGAGTACATCAACTCAAAACCGAAACTGATGCTGCATTTGAACGTTGCTTCTGCCGAAGGATGGACAaagcacaacaacaaaaaggacTGGTTGATCACATGACCAGCTTGGAGAACACCCATGGCTCGTGTCCCGGAGCTGCTCTTGGCCACTTTGGAGGAGCTGCTTGATAAAGAGCTGAGGACTTTCCAGTGGTTTCTGTCCAGTAATGTTCTCGAAGGATTCCCTCATATTCCAAAGTCGCGAGTCGATAGGGTGGACAGGCCGCGCACTGTGGATCTTTTGGTGCAGACTTATGGCTACAACGGTGCCGTTACTGTCACAGTGGATATACTGATGAGAATGAAACTTAAACTGTGGGCTGAAACACTGAAGGAGAACTACGATGAAgTTCCAAGCAATCAAATAGGCAAAGAAATCGACCATCAAGCAATACGAAAAAAACTGAGATCCACCGTGATGACAAAGTACCAAAACATTTACGAGGGGAATGCAGATGAAGGAGACACCATCTACCTGAACAAAATCTACACCGAACTGCGCTTGATCGAAGGAGACTGGGGAGGCTTCAGCAATGAGCATGAGGTCAGACAGCGGAGGTCCAACGATGTGACGACAGAAGAAACCTCCATTAAAGCGAGCAACATTTTCAAACCAACGCACAACCAAGAGAAGCGAATCAGAACTGTGCTTACCCAGGGTATACCTGGAGTGGGTAAAACTGTCTGCACACAGAAGTTTACCCTAAGCTGGGCTGAAGGCGAGGAAAATCAGGACATAACCTTCCTCTTCCCGCTTCCTTTCCGTGAACTGAATCCAAACATCGGCGAGAAAGACTACAGTCTGATGCAGCTGCTCCATCAGTTCTTCCCTGAGATGAAACCTCTTGAGGCGCTGGGAACAGAATGCAAAGTCCTCTTCATCTTCGACGGCCTGGACGAGACTCTCCTCCCCTTGGACTTCAAGCACAACAAGGTCTTGAGAGATGAGACTGAGCCGGCCTCTCTAGATGTGCTGATCACCAACCTCATCACCGGAGATCTGCTTGGCAACGCTCTCATCTGGATCACGTCTAGACCTGCGGCAGCAAGCCGTATCCCCCGAAAGCACATCCACCAATGGACGGAGGTGAAGGGCTTTGCAAATGAACAGAGGGAGGAATACTTTAGGAAGCGTTTGCACAATGATAACCTCGCCACCAGGATCATCAACCATGTGAAGTCATCAAGAAGCCTCGACATCATGTGTCAGATACCAGTTTTCTGCTGGATCACAGTCACCGTAATGAAGAAAGTTTTGCACGACAATGTGACAGGAGGCATGCCCAACACCCTGACCGAGATGTATGCGTATCTCCTTCTCTGCCAGACAGACCGGATGATAGAGGGGCACTACCCAATGTCAAGTGACAATGTTGTCTTGAAGCTAGCGGAGCTGGCATTCCGCCAACTGGAGAAAGGCAAACTGATCTTCTACGAGACTGACTTGAAAGAGTGCGGCATGGATGTCAAAGAGGCGACCATCTACTCAGGAGTTTGCACAGAGCTGTTTGTGATGGAGGGCCGAAGGAGGAGAGAAGTTTTTAGCTTTGTACATTTAACCATCCAGGAGTTTCTCGCAGCTGTGTATGTCCGTCATTCCTACATGcaaagaaaggaaaatgttcTTCTTGGACACCTGAAAAGGATGTCTACCAGATGGCTCCCCAAGTCTGTGTTCAGTTTTCACAAGACTGCCATCGAAAAAGCCTTGGAGAGTCCAGACGGCCGCTGGGACCTCTTCCTTCGCTTTCTGCTGGGGCTGTCGCTGAAGCCGAACCAAGAGCTCCTCGGTAGAATACTGTCTTTGGGAGCTGAAGGAAAAGAGGATGTGGAGAGAACCGTCCAGTTTATCAAAGAGAAGATTAGAGAGGATCCAGAGTCCAAGCTCAACCTCTTCCACTGCCTGAGTGAGCTCAAAGAGGAGTCTTTGGTGCAGGAGATCCAGAGCTTTGTGAGTTCTGGGAGGCTTGATGCCAAAAAGTTGTCTCCGGTCCAGTGGTCCGCGCTCACTTTCGAACTGATGACATCAGAGGCCACAGAGGAAGAGTTTGACTTGAAGAAGTACATAAGATCAGAAGAAGGGGTAGTAAAGCTGCTGACTGTCATTACTTCCTCCACACGTGCTCTGCTAAATCACTGTAACCTCACTGAGAACTGCTGTAACGATTTGGCCTCCGCGCTGAGCTCGACCTCCTCTCACCTCACAGAACTGGACCTGAGTGACAACAACCTGAAGGATTCAGGGGTGAAACTGCTTTCTGTTGGATTAGGGAGTCCACACTGTAAACTTAGGAGTTTAAGATTACATAAATGTAAACTGGAAGGAGACTGCTGTGAGGTACTGGCTGTTGCTCTCAGCACAGAGTCTACCCAACTCAGAGAACTGGACCTGAGTGCTAATGACTTCCAGGAAGCAGGAGTCAAGGCTCTGTGTGCGGGACTCTGTAGCCACCACTGCAAACTACAAACAGTGAGaaATCCCTGCTGTTTTGATGTACACTCTTACAGGTTCAACCAGTGCAAGCTGAAAGAGAACTGCTGTGCCAATTTGGCTACAGTTTTGAGTTCAGGCGCATCGCACCTGAAATTTCTTGACCTGAGCAACAACAGCCTGAAGGATTCTGGTGTATCTCTGCTTACTGCTGGACTGAGGAGTCCACACTGTAGACTGGAAACACTACGGCTCAGCTGGTGTGGCCTTACACATAAATGCTGCAGTCACATTGGCTCTGCTCTGAGCTCTGACTCTACCTCCAtcagagagctggacctgagtggAAACAACCTGCAGGGTCCAGGCATTCAGCTGCTGTGTGCTGGACTGAGAAGTCCACACTGTAAACTGGAAACACTAAGGTTAAATGAGTGCAATCTCCAGAAATGCTGTGCGGATTCGGCCTCAGTCCTCAGCTGCGACACCTCTCACCTGAAGGAGCTTGATCTGAGTGGGAACGACCTGCAGGACTCTGAAGTGAAGCGGCTCTCTTCTGGATTGGCGAGTCCGGCCTGTAAACTGGAGACGTTAAGGCTGTCATTCTGCGGAGTCACAGAGAAAGGCTGTGTGTATTTGGCTTCAGCGCTGAGCTCCAACCCTTCTCACCTGAAGCAGCTTGACCTCAGCTACAACTACGTGCAGGACTCGGGAGTGAAGCTGATCTCTGTTCATTTGAATGACCCGCTCTATAAACTGGAAAAATTCagTGTGGACAATAATGCAGAGTGCTACCTGAAATCAACACTGAAAAACTATGCATGTACACTCAcgctggacacaaacacagctgccaGATCTCTCTTTCTGTACGACGGAGGAAAGCAGGGGACGTGGGTCAGGGAGAGACAGCAGTACTCAGATCACCCCGAGAGGTTCGAGAGCGTCTCACAGGTGTTGTGTCACCAAGGCCTCACCAAACGCCACtactgggaggtggagtggCGAGGACGCTGGGTGGATGTTGCCGTGGCGCTGAAGGGGATCCGTCGGAGGGCGAGCTCTAACCTCTGCGGGTTTGGCTACACAGATCAATCCTGGAGTCTGTTCTGCTCTGAGGATCACTACAGCGCTCACCACGACCACCAGCCTGTGGAAATACCCGCACCTCCGTCTCGCTCCCACAAGGTGGGAGTCTATCTGGACTGGCCGGGTGGCACcctgtccttctacagcgtctccTTTGGGACCCTCAGCCACCTTCATACGTTCTACAGCAACTTCACTGAGCCTCTCTACCCAGGGTTTGGGATGGAGGAAGATGACTGCTCTGTAACTATTTCTACAGTGGAGGGCTTGCAAGAACTCATTTCTCGGTCAGCTAGTGCAGAAAGAATTGACCAATTCTGAGTGCAGGTTCATTTGGGGAATTGAAGgaaattgtgtttttctgcTCACAGAGAGTGGCAGCAGTGCTGGAGAAAGAGATGTGATGaacaggggggaaaaaaaagaatgctgTATTCTCACTGTATTTTCACTTAGGTTGTCTAAGTTATATTTAAAATCAAACATGAAggacaaaatatatattatgtgaAAACATGGACATTGGAAAAATGTGGATTGGTAGCATCTTTCATTAAAAAGGTTTCTGTTCAACAGCCAATTGTAAACTTCCATCTATAATCTTCCAACCTGCACATAGATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638095.1 lncRNA downstream 38506 21777033 ~ 21777676 (-) True LOC120553093
TU311216 lncRNA downstream 133643 21681560 ~ 21682539 (-) True G229413
TU311214 lncRNA downstream 133716 21681613 ~ 21682466 (-) False G229413
TU311187 lncRNA downstream 160020 21655902 ~ 21656162 (-) True G229392
TU311185 lncRNA downstream 173414 21642515 ~ 21642768 (-) True G229390
TU311375 lncRNA upstream 26449 21854383 ~ 21856289 (-) True G229527
TU311391 lncRNA upstream 50338 21878272 ~ 21878705 (-) True G229539
TU311393 lncRNA upstream 51970 21879904 ~ 21880220 (-) True G229541
TU311400 lncRNA upstream 84471 21912405 ~ 21947444 (-) False G229546
TU311398 lncRNA upstream 117985 21945919 ~ 21947444 (-) False G229546
XM_039791171.1 mRNA downstream 5101 21804418 ~ 21811081 (-) True LOC120553090
XM_039791173.1 mRNA downstream 5107 21804418 ~ 21811075 (-) False LOC120553090
XM_039791971.1 mRNA downstream 62911 21684210 ~ 21753271 (-) False LOC120553490
XM_039791163.1 mRNA upstream 1077 21829011 ~ 21836594 (-) True selenoo2
XM_039791165.1 mRNA upstream 1877 21829811 ~ 21836596 (-) False selenoo2
XM_039792520.1 mRNA upstream 62676 21890610 ~ 21894722 (-) True apex1
XM_039792521.1 mRNA upstream 100305 21928239 ~ 21935396 (-) True si:ch211-214j24.10
XM_039792518.1 mRNA upstream 109404 21937338 ~ 21945575 (-) True LOC120553803
TU311319 other downstream 5085 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 5151 21771088 ~ 21811031 (-) False LOC120553090
XR_005638087.1 other downstream 670649 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 857962 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1693843 20067036 ~ 20122339 (-) False rerg
TU311637 other upstream 1276826 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 1864087 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 1871763 23699697 ~ 23700198 (-) True G229907
TU311926 other upstream 2080622 23908556 ~ 23914692 (-) True G229950
TU311924 other upstream 2084167 23912101 ~ 23914692 (-) False G229950

Expression Profile