RNA id: XM_039791174.1


Basic Information

Item Value
RNA id XM_039791174.1
length 2722
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC120553094
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21870583 ~ 21877270 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttacattttcaaatgtgttttctgaTGATCCTGATGAAGAGTACAAGCTAGAACTTGTTGAGCTAACAATACATTATTCTCTAAGTGTTAACTCTCAGACTTTTTCCTGTTCTAAGTGCACCTTGgaagaagTACCAGAGGAAGCGGTCATAGTGCTATGCTGCAGCCATAGATGAAGACCACCATGGATACCAGAGCTTGTATCAGAAGGGAGTACTTTGCCATCTTCTTCTTTCTGGCTGCGGCTGTCTCCATCATTGTGTTACATAACATGGAAGTTCTGGAGACCACCTGCCAGATTCAGCATAAAGTGAACTCCACCACCATCATTGCCCCGAGAGTTTCCACTGTCCCTGACGTGCATCGCAGCTTCTGCACCTTCCAGCCACTGTCTCCTAACGACGCTCTGGAGGAACGCCTCCTACTGGACTCCATTGCTTGGCCTAAAACTCCAGTATTGCCAGCTCCTCTTTCCCTGGAGAAGACCAGTGATCCAGCTCACAGCTCCTTCACCATTCTCccaaggaggggaggaggacagTGGCACGTAGGGGATCAGCTGGAGGTTAAGATCAATATGTCTGATTTCCAGGGCCGTCCCAAGAAGTCTGGAGGGGACTTCTTACTCGCCCGACTGCACAACCAGAAGCTTGGTGCAGGTGTGGTTGGGCAAGTGGTGGATCATCTGAATGGCAGCTACTCTGCTGTATTCTCTTTACCCTGGGAAGGAGATGCGCAGGTTGAGGTGACGCTGGTTCACCCTAGTGAGGCTGTCCCAGTGCTGAACCGGCTAAACGGCGAACAGCCTGACAGGATTTACTTTAAGAGCCTCTTCCGCTCTGGCTCAATCTCTGAAACTACCATCTGTAACGTCTGCCTACGTCCAACCCAGCCGCTGTGCAACTACACTGACCTCCGTACAGGCGAGCCTTGGTTCTGCTACAAGCCAAAGAAGCTGAGCTGTGATGCCAGGATCAACCACGCAATGGGAAACTACAAACAAAACCTCAGGGCCTACGAGCATAAGCTCTTTCAAAGGGGTGTCAACTTGAAAGTCTTCATTCGGGCTTCAGGACTTAATATTGTCACTATTTTGCCAAAAATGAAAGGCCAATCAGAGGTGAAGAGCAGCAGTGTGAAGTCTGGACCCTCTGGTTATTACTACCAGGGTGTGTGGCGAGCACTAGGTGGCACCACAGTTCGCCAATTTAACAACTCTGCCATCGGTCAGTGTCTGAAAGGAAAGGTGGTCTACATGTATGGAGACTCTACCGTCAGGCAGTTTTTTGAGTACCTCAACGCAGTACTACCAGGCCTTAAGGAGTTTGACCTGCACAGCCCGAAAAAAGCTGGACCGTACATCTCCTTGGACTATGCAAACAACATCTTGTTGATGTCACGCTTCCACGGTCCTCCTATCCGTATTGTCACTGTCCCAACCAGCGAGCTTCGTTACGTTGCCAATGAAATTGATGGCTTGGTCGGAGGCACGAACGCTGTCGTCCTTTTTGGCATTTGGGCTCACTTTGGAACTTTCCCCATGGAGATCTACATCCGGCGGCTGCAGAACATCCGCAGGGCGGTGGCACGGCTGCTAGACAGGGCTCCAGGCACGGTGGTCATCATCCGGACAGGGAACGCCAAAGCTTTGTCACTTAGTGTGTCACTAACCAACAGCGACTGGTACTCGCTGCAGTGTAACAAGGTGCTCAGAGCCGTGTTCAAAGGACTGAACGTTCATCTGATCGATGCCTGGGAGATGGTTCTTGCCCACCAACTGCCACACAACCTCCACCCACCATCTCCCATAATTAAAAATATGATTAACGTTATCTTGTCCTACGTGTGCCCTCAAAAGGGCggctaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgggggagaGGAGTGGGGATTAAAACGCAATCTGTTTCTGCCAAGTGTTGTGATTTTTACTTCAGCAGTCCATGCACCGACTAGACTAACTACaatgtttctatttttattttcagtcaGGGAATGTTGAGTGAGCACAAAAGAAACACGACTGGATGGAAAGCAGCTCCAAGCTGGGTTGGGTATAACAAACGTCTTAATAATCATACttatcacatactgtacaacttCATGCCCGAGTCTTGGGATTGTCAAGAAAAAATTCCAGTCAGGCAGGAAATTACGAACCAATGTAGAATCTGATTAAGCAGATTAAGAACTTCCTTACATAACTCATAGCCAGTCTATGAAAGAAACAATGGGGTTCTAACGACAATAGGCAGggatttaaagcaacactagagaacttttcccgctttgtTTGATTGTCTCactggaactacagctcgcactacccgatctggcaaacttgcataatgtaatgtaacggGTAATTCTGCTTTACTgtgggaaaagttctctagtgttgcttaaGACACTCCAGCATTTACCTGTACTCTGCTGGTTTGACTCCAAGGTGCGATGTAGTCACTGTAGCTCACCATAGTTTTCTTTTAAGTGCAATTAATGTTGTGGTTTCAAGAAACAAGTTAGGGTACAAATATACGTTACCTTCCTGGTAAAATAAATTCTGGATCTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311234 lncRNA upstream 4263 21853196 ~ 21866320 (+) True G229431
TU311254 lncRNA upstream 36786 21829015 ~ 21833797 (+) True G229450
TU311253 lncRNA upstream 36786 21831602 ~ 21833797 (+) False G229450
TU311235 lncRNA upstream 102554 21767353 ~ 21768029 (+) True G229432
TU311194 lncRNA upstream 187099 21682619 ~ 21683484 (+) True G229399
TU311290 lncRNA downstream 174738 22052008 ~ 22098446 (+) True G229481
TU311294 lncRNA downstream 251756 22129026 ~ 22131396 (+) True G229485
TU311300 lncRNA downstream 416227 22293497 ~ 22293760 (+) True G229491
TU311302 lncRNA downstream 442996 22320266 ~ 22320528 (+) True G229493
TU311303 lncRNA downstream 448525 22325795 ~ 22326257 (+) True G229494
XM_039791169.1 mRNA upstream 68911 21787567 ~ 21801672 (+) False LOC120553088
XM_039791166.1 mRNA upstream 68912 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA upstream 68912 21787216 ~ 21801671 (+) True LOC120553088
XM_039791168.1 mRNA upstream 68912 21789043 ~ 21801671 (+) False LOC120553088
XM_039791170.1 mRNA upstream 104066 21757653 ~ 21766517 (+) True LOC120553089
XM_039792517.1 mRNA downstream 1008 21878278 ~ 21890573 (+) True LOC120553802
XM_039792519.1 mRNA downstream 17670 21894940 ~ 21928410 (+) True LOC120553804
XM_039791197.1 mRNA downstream 616108 22493378 ~ 22506203 (+) True e2f7
XM_039791287.1 mRNA downstream 637696 22514966 ~ 22534115 (+) True csrp2
XM_039792120.1 mRNA downstream 697553 22574823 ~ 22675194 (+) False osbpl8
TU311231 other upstream 2286 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 11374 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 19982 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 23563 21837922 ~ 21847020 (+) True G229423
unassigned_transcript_1526 other upstream 273705 21596768 ~ 21596878 (+) True trnal-caa_47
XR_005638197.1 other downstream 862447 22739717 ~ 22743179 (+) True phlda1
XR_005638156.1 other downstream 1438153 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 1438153 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 1438153 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 1955761 23833031 ~ 23848624 (+) True adm2a

Expression Profile