RNA id: XM_039791183.1


Basic Information

Item Value
RNA id XM_039791183.1
length 3880
RNA type mRNA
GC content 0.53
exon number 20
gene id sfmbt2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6579112 ~ 6636681 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGAAcgggggcagcagcagcagtagctgAAAGACGTCGCTCGCGTTGCTGTGCTCGTGCTTCATGCGAacgaggagaagagagagagaggcgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaaacagagggGGTCTCGAGAAGGAGAGGCGACCAAAAACTTGCACAGAACTGTTGGGCAAAGTGAGAGATGCAGTGAAGGATAACCAGCGCACCACCGGTCAAAGGTTAAACACTCACCAGGAAGTGGAGGGGCAGGATGCAGTCTCTCGCCCAGGAGCAGCCTTTGGCCCTCACTGCAGTTAAGTCACACTATCCGACCAATGGGAAAGAAGAAGAGGTGAACACAGATGCTGATTCCATGGAGGAAGAGGCAGAGTTCAACTGGGAGGAGTACATGGAGGAGACGGGGGCTAACGCCGCCCCTCACACCACCTTCAAACATGTGGAGATCAGCCTGCAGAGCAGCTTCCAGCCTGGTATGAAGCTGGAAGTGGCCAATAAGAGCAGCCCGGACACATACTGGATGGCCACCATCATCACCACATGcggccagctgctgctgctgcgctacAGCGGCTACGGCGAGGACCGCAAAGCCGACTTCTGGTGTGATGTCATGACGGCCGAGCTGCACCCGGTGGGCTGgtgcacacagaacaacaagaCACTCATGCCCCCCGAAGCCATCAAGGAGAAATACAGCGACTGGACCGAGTTTCTGGTTCAGGACCTGACCGGCGCCAGGACGGCACCGGCCAACCTGCTGGAGGGGcctcTGAGAGGTAAGAACACCATGGATCTGATCGTCGAGGGCTCAGTCCTGGAGCTTCAGGACGTCTTGAGCCCGTTGCTTTACTGGCCTGTCCGAGTCATCCAGAACGTCGGAGGTAGACTCTGTCTGCGCTACGCCGGTCTCTCTGAAGACCACCAGGCTCAGGACACCTGGCTGTTCTACCTGGACGTCAGGCTTCGCCCGCTCGGCTGGGCTCTGGAAAACCGGCTCGCCTTAGAACCGCCTACAGGACTCAGGTCTCTAAAGAGCGCCCCCGACTGGCAGGAGGCTCTGGAGGACGCTCAACTTGACGGACAGAAGAACCCTCTGCCGCTCGAGGTGTTCAAGGACCATGTAGACCTGCCCGAGCACTCCTTCAAGACGGGGATGAAGCTGGAGATGGTTTCTCCGTGGGAGCAGCTACAGATCTGCCCCGTTTCTGTCACCAAGGTCTACAATGAGATCTACTTCCAGGTAACGCTGGACGATCTCTCCGTTGACGCTATGCCACGGTTTGTGCTGTGTCATGCCAACTCGCCCGGAATCCTGCCCGTCCAGTGGTGTCTAAAGAACGGCGTGGGTCTGGAGCGGCCCCGGGGCTACGAGGGCCAGGACTTTGACTGGGCCGACTATCTGAAGCTGGGCGGGACAGAGGCAGCCCCCGACGCCTGCTTCCCTGATacatGGCAGAACAGAGGCTTTGCCAAGGACATGTGGCTGGAGGCGGTGAACCCTCACCGGCCAGCGGAGGTGTGTGTGGCTCAGATCACACAGGCCAGAGGATGCCTGCTGTGGCTCCGACTGGAAGGTGTGGCGAAGCCTCTGTCAGAGTGTATCGTGGACGTCGAGTCCATGGACATCTTCCCTGTCGGCTGGTGCGAAGCCAACGCTTACCCTCTGACCCCTCCACTCAAACCTGtctGCCAGAAGCAGAAGAAGATAGCGGTGGTCCAGCCAGAGAAACAGTTGGCTCCGTCCCAGCCATTAGAGACGGCTCCTGTCAACCTCTGCCAGCCCGTCGCCATGGATCCAGGCTCAGTCAATGGCAGATACTGCTGCTCCAAGATTTTTGTCAACCACCGCTGTTTCTCAGGACCCTACCTCAACAAGGGACGCATCGCGGAGCTGCCGCAGGCCGTCGGGCCCGGAAAATGCACGCTGGTCCTCAAAGAGCTGCTGAGCATGCTGATCAATGCCGCCTACAAGCCTGGACGAGTCCTGAAGgagctgcaggatctggaggaTACAAGCTGGGACAGCCAAGAGGAGACCCTCAAAGCCAAATATAAAGGGAAAACTTATCGCTCCACCATCCGGATAGTCCGCCTCGCAGACCAGATCCCAGACTTCTGCCGTAAGGTGTGCGTGAAGCTGCAGTGCTGCCCCAACCTCTTCAGCCCCGTCCTCGTCACCGACAAGTGCCCGGAGAACTGCTTCGTTCAGACGAAAACCAAATACACCTATTACTAtgggaagaagaggaagctgTCCAAGCCGAtgggaggagaggaggcagCCGAGGGAGACCTGGCCAAGCCGACGCGCCgcaggaagaagaggaaagcTATCTTTGTGCAGAAGAAGAGACGCTCGTCCGCTGTGGACTACACTCCTGCTGGCTCACCGCAGgACAGTGACGAGGATGAAGAGTTGGCATTGCAATCGGGCAGCGAAGGCACCAGCTCAGAGCCACGCGAGGACCACACAGACGCCTCCTCAGTGGAGGTGGCCAGCAGCCGCCCTCGCCGGGCCGTGACTCTGCGCAGGGCCTTCAGTGCCGGCAACACTACGGGCAGCCAGGAGGTCCCCGAGGGCCGCAGGAGGTCGACCCGCTCGCTGTCTGCGTACAACCAGAACAACAAGTACCAGCCACCCAAAGGACAAGACATGcaggtggtggaggaggaggagggtcagCTGGTTTTGGACAGAAATCCTCTGGAGTGGAGCGTAGACGAAGTCGTTCAGTTTATCAACTCTACTGACTGTGCGTCCCTGGCCAACATCTTCCAGGAGCAGGACATCGACGGCCAGGCCCTGCTGTTGCTAACTCTGCCCACCGTACAGGAGTGTATGGACCTGAAGCTCGGCCCCGCCATCAAACTGTGTCACCAGATAGAGCGCGTCAAGGTTGCCTTTTACAGACAGTATGCCGACTGAAGTGAACTCAAGGAGCAGAAACGCTGAACGCCCCCGTCAGTGGAAAGAAATGTTGTGGTCCTGCACGACTGGGAACTGTTGGATTAGGTGCCTCCTGGTGGAAAGTTTTGGCAATGTGAAAGTTGTTACTGTTTTCCAACTAGCAAGAAGAAGGGGATATTTTTTGCAGCGGTCGCattggcacaaaaaaaaagcacaaactgAAGTTACAACCGAAGAAGGTTTCCCTATGAGAAGTTGAAGGATTAAGTTCTGGGATACGGTCGGTGTGAAACCATGATGCAGTACCCACGTCCGTCAAACCACATCGGAGTCGATCCGGGTGCTTTACTGATCTGTGAAGAAGTTATCATGAAAAGCAGAGGACTTAGTTCTGAAgacatttgtttatttcttacTTTTTATTTCAATGTTATTTGTGACAGAGGAGCATTATAGCATTTAGGTTAAAAATCATTATTGACCATAAAGAGTTTTTCCCTTTTTGTGTGACATGATTGGTTTCCAAAAAATATATCTAAAAGTATTTAACAAACCAAGAAGTAAtatatttgaaatatttattGTTATCCTTATTAAGGAGGAGTAATCTATCCATTTTGATGGAGAGGAAATAATTGATATATAATAAGGTCAACACAAACTCCTTTTCCACTAAAACAAACCCCTAACCGATATTTCACAAACAGAAACATGATCTGCATCTATTTAGATTTACACTTCTTCTGTATTtatagaggggaaaaaaaggtgttTGGGGAAGTAAGCCCTTCTAAAAtactttgtgttgtgttgctcATTTCTCATTATTGCAATCACATGAAACAATCATGTAAGCTATTTTGTGTCCATCTATGCAAATGTGTTGCAGATATTTTTGATAAGTACGAAAATAAATTTCTATTGATTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638192.1 lncRNA upstream 78052 6429094 ~ 6501060 (+) True LOC120553621
XR_005638108.1 lncRNA upstream 289213 6183044 ~ 6289899 (+) True LOC120553126
TU306637 lncRNA upstream 481204 6097678 ~ 6097908 (+) True G226097
TU306625 lncRNA upstream 659698 5919094 ~ 5919414 (+) True G226085
TU306571 lncRNA upstream 802679 5750128 ~ 5776433 (+) True G226042
TU306694 lncRNA downstream 46037 6682718 ~ 6686625 (+) False prkcq
TU306925 lncRNA downstream 520809 7157490 ~ 7157887 (+) True G226292
TU306949 lncRNA downstream 576711 7213392 ~ 7216386 (+) True G226306
TU306966 lncRNA downstream 630828 7267509 ~ 7268219 (+) False G226316
TU306965 lncRNA downstream 631146 7267827 ~ 7268758 (+) True G226316
XM_039791177.1 mRNA upstream 26026 6535175 ~ 6553086 (+) True itih5
XM_039792084.1 mRNA upstream 59660 6513845 ~ 6519452 (+) True kin
XM_039791340.1 mRNA upstream 1179809 5393640 ~ 5399303 (+) True echdc3
XM_039791339.1 mRNA upstream 1186172 5383033 ~ 5392940 (+) False kcnj8
XM_039791185.1 mRNA downstream 23839 6660520 ~ 6686639 (+) True prkcq
XM_039791186.1 mRNA downstream 23839 6660520 ~ 6686639 (+) False prkcq
XM_039791819.1 mRNA downstream 82427 6719108 ~ 6734409 (+) True gnsa
XM_039791515.1 mRNA downstream 339651 6976332 ~ 6995588 (+) False LOC120553270
XM_039791510.1 mRNA downstream 339726 6976407 ~ 7012279 (+) False LOC120553268
XR_005638175.1 other upstream 1205909 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1205909 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1205909 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 1921143 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 2382297 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1480 other downstream 510588 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 681859 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 686389 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 759813 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1790010 8426691 ~ 8432697 (+) True rps16

Expression Profile