RNA id: XM_039791202.1


Basic Information

Item Value
RNA id XM_039791202.1
length 1162
RNA type mRNA
GC content 0.54
exon number 3
gene id myf5
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8468661 ~ 8471034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCATATAAGGGGGGCCTGGGGCAACAGACTCCTCATATCACTCAGAGgtctcctctctctcaccccACTCCTCtaccctccttccttcctttgcaCCCATCTCAACATCCATTCagacctcttttcttcagcAAACATGGACGTCTTCTCACCATCCCAGGTCTACTACGACTGTGCTTCATCTCCAGACAGCTTGGAGTTTGGCGCAGGCTTGGAGCTCGATGGCTCCGAGGAGGACGAGCATGTGAGGATCCCCGGAGCCCCCCACCAGCCGGGACACTGCCTCCAGTGGGCCTGCAAGGCCTGCAAGCGCAAGTCCAACTTTGTGGACCGCAGACGGGCCGCCACCATGCGAGAGCGCCGGCGGCTGAAGAAGGTCAACCACGCTTTCGAGGCTTTGAGGCGCTGCACCTCGGCCAACCCCAGCCAACGTCTGCCAAAGGTGGAGATCCTGCGCAACGCCATCCAGTACATCGAGAGCCTGCAGGATCTGCTACGAGAGCAGGTGGAAAACTACTACGGCCTACCTGGAGAGAGCAGCTCTGAGCCCGGGAGCCCGCTGTCCAGCTGCTCTGATGGCATGGCTGACAGCAACAGTCCAGTGTGGCACCATCTGAATGCAAACTACAGCAACGGTTATTCATATGCGAGGAACGACAGTTTAGGCGACAAGGCAGCCGGAGCCTCCAGTCTGGAGTGTCTCTCCAGCATCGTGGACCGTCTGTCCTCGGTGGAGTCCAGCTGCGGGCCGCCAGCTCTGAGAGACATGGCCACCTTCTCCCCCGGCAGCTCCGACTCGCAGCCCTGCACGCCGGAGAGCCCCGGATCCAGGCCCGTCTACCACGTCCTGTGAAGGAAACTTTGCTGTGACGTGGATATATTACGGGCAGGCACCCTGCTTTCACCACACACCAGCTGCATTTGCAACAAGAAATGAGAACTAGTGTTGTGCAAATCTGAAGAAGACTCAGCCGTATCTAAAGACCTGCGGCAAGCAGCTTTTATATTGTACATGAGATTGTaaatatgtaatgtaaatgCCCATTTATTCTATACATGCTATTATACCCAATGAGACATATTTAATTATGACAGTTAATGTAATGTTGCATTATTCCAACATGAAGTGGTATTTAagcatttttaattatttacttTACA

Function

GO: NA

KEGG:

id description
K18484 MYF5; myogenic factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307276 lncRNA upstream 60002 8341630 ~ 8408659 (+) False G226554
TU307280 lncRNA upstream 109379 8356330 ~ 8359282 (+) True G226556
TU307275 lncRNA upstream 124858 8341630 ~ 8343803 (+) True G226554
TU307221 lncRNA upstream 161833 8260333 ~ 8306828 (+) False G226515
TU307219 lncRNA upstream 205784 8260333 ~ 8262877 (+) True G226515
XR_005638149.1 lncRNA downstream 146780 8617814 ~ 8620495 (+) True LOC120553277
XR_005638150.1 lncRNA downstream 146789 8617823 ~ 8620495 (+) False LOC120553277
TU307369 lncRNA downstream 398984 8870018 ~ 8870711 (+) True G226638
TU307374 lncRNA downstream 410783 8881817 ~ 8883677 (+) True G226641
TU307514 lncRNA downstream 464016 8935050 ~ 8935551 (+) True G226720
XM_039791157.1 mRNA upstream 4567 8462324 ~ 8464094 (+) True myf6
XM_039792276.1 mRNA upstream 38945 8426635 ~ 8429716 (+) False rps16
XM_039791584.1 mRNA upstream 455850 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791529.1 mRNA downstream 44554 8515588 ~ 8565355 (+) True acss3
XM_039791532.1 mRNA downstream 331514 8802548 ~ 8807170 (+) True washc3
XM_039791533.1 mRNA downstream 347536 8818570 ~ 8845025 (+) True gnptab
XM_039791534.1 mRNA downstream 347536 8818570 ~ 8845025 (+) False gnptab
XM_039791812.1 mRNA downstream 447200 8918234 ~ 8926796 (+) True atp6v1e1b
TU307294 other upstream 35964 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1068262 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1136402 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 1147612 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 1321321 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638164.1 other downstream 663560 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 766230 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 1721292 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 1723396 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 1724086 10195120 ~ 10195206 (+) True trnay-gua_59

Expression Profile