RNA id: XM_039791210.1


Basic Information

Item Value
RNA id XM_039791210.1
length 4377
RNA type mRNA
GC content 0.45
exon number 12
gene id nrf1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13005339 ~ 13022947 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGGCATCACTAGTGCAGATCAGTGTTGTGTGCGGTCTTCTCGCTGTGTTTGCTGCGTTTGCTGCTGGCTCCCCTCTGTCGTCCATTAGAGCTCGGTTCCATCCCCACTGTACGGCGCAGGCCCGAAGTAGCGCAGCCGCTCTGAGtCATTGTAACGTGGATCCAGCTGTGTAGACCAGGCGGCCGATAATGGACGAGCACGTCGTTCACCAGACAGAACACATGACCACCATCGAGGCCAGCGCCGTCAGCCAACAGGTACATGTGGCCACCTTTACCGAAGCGTCCATGATGAGCGCTGAGGAAGACTCAACGTCCTCACCAGATGATGATCCTTATGATGATACGGACATCCTCAACTCAGCTGGCACTGATGAGATCACAGCTCACCTGGCTGCCGCAGggCCAGTAGGcatggcagctgctgctgccgtGGCAACTggtaagaaaagaaagaggccTCATATCTTTGAATCCAACCCCTCCATCCGCAAGAGGCAGCAGACGCGTCTGCTCAGgaaaCTGCGAGCCACCCTGGATGAGTACACCACTAGAGTGGGCCAACAGGCCATAGTGCTGTGTATCTCTCCTTCAAAACCCAACCCTGTGTTCAAGGTGTTTGGTGCTGCTCCTCTGGAGAATGTGGTTAGGAAGTATAAGGGCATGATATTGGAGGATCTGGAGAACGCTCTGGCTGAACATGCCCCCGCTGGTGGAGAGCTAGCCTCAGAGCTGCCCCCACTCACCATCGATGGCATCCCTGTCTCTGTGGACAAGATGACCCAGGCCCAGCTGCGAGCGTTCATCCCAGAGATGCTGAAGTACTCAACGGGCCGAGGGAAGCCTGGCTGGGGTAAGGAGAGCTGTAAGCCAGTGTGGTGGCCTGAGGATATCCCTTGGGCCAATGTACGCAGCGACGTCCGCACAGAGGAGCAGAAACAGAGGGTGTCTTGGACGCAGGCATTGCGGACTATCGTTAAGAACTGCTACAAGCAGCATGGCCGTGAGGATCTGTTGTATGCTTTTGAAGACCAGATAACCACGACAACCACCACCCAGCACCACCTAACCACTGCGCAGAGTATCACTCATCTCGTGCCATCGCAAACTGTGGTACAGACCGTCAACAACCCTGACGGAACAGTCTCGCTCATCCAGGTTGGCACAGGACACACAGTTGCCACCCTGGCAGATGCCTCAGAGCTGCCAGGTGTGACGGTGGCACAGGTCAACTACGCCACAGTAACTGACGGAGAGATTGTCCCTTTCGAGGTGGAGCAGAACTGGGCCACCCTCCAGGGCGGCGAGATGACAATCCAAACCACTCAGGCCTCAGAGGCCACGCAGGCTGTAGCATCCCTGGCAGAAGCCGCTGTTGCCGCAAGTCACGAAATGCAGCCCGGAGCCACCGTCACAATGGCTCTTAACAGtgagGCAGCAGCCCATGCTGTAGCGACGTTGGCGGAGGCTACTCTACAAGGCGGAGGGCAGATTGTCCTGGCAGAGACAGCAGCTGCTGTTGGGGCACTGGCAGGGGTTCAAGATGCCACAGGTCTGGTCCAGATCCCAGTCAGCATGTACCAGACTGTAGTGACCAGCCTCGCCCATGGCAATCGGCCCGTCCAGGTTGCCATGGCACCTGTTGCCACACGCATAGATAACACTGTCACGCTTGACGGCCAAGCGGTGGAGGTTGTGACCCTGGAACAGTGACAATTAAGACCCTGGAAGCAGTAGGAGGCACTGCCACCTTGGAGATTTGATTATCCTACTGGCTTCCAAGACGTCACGCTGTGTACAatgtcaaatatatttttaaatgtacagCTGGAGGGGTAGCAAAAGTGAGTTATCAATGTGTTTACTATGTAAAGATATTGCTTTTGTCGGTATGATTTTTCTCCAATTTAGCTcgtggtttttttttgttagctctgtgatgttgagtatttagtatttatttctttacaattaatctttacataaaacaaagatGAACCAAAAAGCCAAAGTGTGTAACTATCACTGTTCTGGATTTTTATTATCGTCTATGTGCTtgactgttttgtttttaggaTGCATTTACAATTCAGTGCCATAGTCAGAGATCACTCCTCCTCTGTTATCCATATCCTTGATCACTATTCTAAATGTCACTCTTTCCACCTCAACTTCCCTAAAGCTCTAGAACAGCATCTGAGCTCCCAGACATTTCTCACATTAGATGAGGAAATATTATGTTTTGTCCTTTTCCCTGTGCTGTTTTACTGTAGTCCACGCACAAGCCAAGATTTGTGAAGACTCAGGATATACATCAAGATGTTTTTTACTGCTGAGCTCCCTTCCTGAAGCAGCTATTTTGTCTACCAAATCCATTTATTTACAGTGCATGGATAGGAGCATCCCTTggtatgttatttttttttttaacattaacttGTATCATGTCATATTTGGACAGGAGCTGCAGTATTTGTGATGCAAATATCAAAAAGGCATCTCTTTAAATCTTGGAACAACCTAAATTTGCTTGCCAAGAATCGACTTAGTTTCATGCAGCTTAACAGTTGGTTCAACTTTCaccacaatttaaaaaataaagtccaATAAAATGGCTGCTGTTCACCATTCATTCAGTTTCTCTTATGATTACTAGTGCACTGTTCATCCAACAGCATAACTATCAATGCAAACATAAAATGCTAACGCTACGGTAGTCAGTTTTTCATATTAATATTGAATCAAATGACTACATTAGATAAGGGTAGTACTGCAGCTCATTAAAGCCTTTTAGCATCTTTTAACTGTATAGTGAAGTCTCACATCTCTTTTCAACCCCTGTAGGCAGCTGTATTCAGCAACTACGCTATTAAACCCAATGCACAAAACTCAAACACCAAATGGTGACAACATTGGACAATACAGTTGAGTATCTAGCAAGGTTGAACCAGATAGCCTATTTTTTGTGAAATTGTGAATATTGGGCTTCATTTGCCAGGAAGCCCAAAAGCACAAATCAGTGCTTATTTTTGCTCCATGTCTGCTGAGCTATTGTTTGCTAACACATTATATGTAGTATCATAAACTTAATTTATTGGGTGATATATTGTTGGCGGTGTGTCTTATCAATTTGTTTAGGTTGCATTTTGTTTAGCAACTTAAGATACATGATTTGGGAGCTGACTTGGACTGGTCTGTCTTGACTTGAAACTGTATTGAAAACAATGACCTTGTCCCACCTCTTCCATTATAGCAcaagagacatacacacacaggaagcaTTAGACATATCGGTACTCACAACTATACAACTGGATCTTAGATTTTTGAGGAACGCCACATTTCTCTGCATTTTGTCccataataaaataattgtcaCAAAATCTGATAACTTCCAAACTCTCCTATACAGCACCCCCACCTTCCCTGCCGTGACAGACAGGGCCATGATTACATCATAAGCTGCCTGAACCTCCTCTGCTTTAAAGCCTGGGATTTGCTAGCCGGGCCCTTCTGTTGCAGAGtagaacagagagagaagcGTTCAGGCCTTAATCTATCAGGCGTCAGTGTATATCCCGCTCTACTTCCAGATTAAAGCGGAACCAGCTTGCATTCACACAGATGAAAAGATCccattttctttcttgttttacGTTGTCATTTTTAGATTGGACCCATTGTGTGAGCTGGAAAACACTCAAGGGTATGCTATGGGTCTTTGTAGGGGAGAGAAAACTTTATATAATGTTGAGTCATTGTAGGTGTGTGGCACGCATGCGCGTCAAACTGTCACTGCAGATTAAAAAAGCCTTATTAGCGTGCTTTCTTGGAAAAATGCCTACACCTCATGCTACCTAAgcctctccctcctccatctctgtctctctctttctctgcaccTTCCGCTCAGCTACACTTACACAAAGTGCATTGAAACCTTTCAACTGTATCATTAAAGCTGAACATAACTGAGTTATGAAATAGCACAGCTTCAAATAGGACAGAACTTGTCTCGCAGTGATGATGTCAACTCTTGTCTTAAGATGGGGCCTTCAGCTGTTTAAATCCTAGGTATTGATGTATTtgaagacatttttgttttaatataaCCATTTAAAATGACACTATTTTTTAGTGacaaataaaccttttttttttgtttcaatcCAAAATATGAACTAAAATATTTGTAACCAGAATGGACTAAATTTTTGTTATTGCAAAATGATGAACTaaatgagaaaatgtgtgttgtattttaagGATGGAAGGATTATGGTTGACAATGATCCAACACTTGAAAAATGCTCTCTATGGCCAACATCGAGTAATAGTGTCTTTGACTAAATAAAGTTGCTATTTTTCACAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308581 lncRNA upstream 95199 12846814 ~ 12910140 (+) False plxna4
TU308405 lncRNA upstream 761584 12243534 ~ 12243755 (+) True G227363
TU308377 lncRNA upstream 1012387 11990100 ~ 11992952 (+) True G227338
TU308264 lncRNA upstream 1377396 11624235 ~ 11627943 (+) True G227267
TU308248 lncRNA upstream 1544839 11460113 ~ 11460500 (+) True G227251
TU308615 lncRNA downstream 48598 13071545 ~ 13075348 (+) True G227510
TU308813 lncRNA downstream 470454 13493401 ~ 13493861 (+) True G227639
TU308823 lncRNA downstream 493535 13516482 ~ 13531547 (+) True G227646
TU308840 lncRNA downstream 531303 13554250 ~ 13554826 (+) True G227662
TU308978 lncRNA downstream 933750 13956697 ~ 13965492 (+) True G227734
XM_039791208.1 mRNA upstream 95150 12659268 ~ 12910189 (+) False plxna4
XM_039791207.1 mRNA upstream 95150 12661357 ~ 12910189 (+) True plxna4
XM_039791206.1 mRNA upstream 95150 12661357 ~ 12910189 (+) False plxna4
XM_039791804.1 mRNA upstream 370458 12561351 ~ 12634881 (+) False chchd3a
XM_039792307.1 mRNA downstream 54210 13077157 ~ 13082244 (+) True klhdc10
XM_039792308.1 mRNA downstream 54210 13077157 ~ 13080889 (+) False klhdc10
XM_039792309.1 mRNA downstream 54210 13077157 ~ 13080664 (+) False klhdc10
XM_039791505.1 mRNA downstream 98565 13121512 ~ 13125815 (+) True LOC120553267
XM_039791506.1 mRNA downstream 98565 13121512 ~ 13125815 (+) False LOC120553267
TU308397 other upstream 878794 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 1248022 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 1892434 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 1892434 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 2019138 10948285 ~ 10986201 (+) False impdh1b
TU308693 other downstream 452198 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 651877 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 746108 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 747119 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1488 other downstream 752040 13774987 ~ 13775059 (+) True trnak-cuu_12

Expression Profile