RNA id: XM_039791214.1


Basic Information

Item Value
RNA id XM_039791214.1
length 4591
RNA type mRNA
GC content 0.46
exon number 17
gene id hcfc2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20272526 ~ 20286587 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGGAATCTCCCCACAGTTTTGGATGGTCTGTAACATAACATGACATGTCAGACAGATCTGTATCAACCATTTCTGCACTATGGACTATCCTGTTTATCTTATGACTATTAATAATGTGAGTTCAAAGGCCATCTCAACATCTGATGTGTTGATATTTTACAATTGTCAGGAAAACATAGCATCTTAAAATGGGTACTCAATATAGTATTCGACTTTCATAAAGTTAGGGGACTGCCAAGAGatagattaaaaatataatGGTCTATGCAGCAGAGTTACCCCAACTTTGAGTCCCCTCAAGCACCATCTAATATTCCTCTTTTGTAAGGCTTTGCTCGGTAAATGTCCTCGTATCCAGTTTGTAACACCGTCTGCCTAAATTTGTATTTCCCTAGCCCAGGCCGAGATAACTCTTTTGACATCATCAGCGTTATTTATTAGAATCAGCAAatagttctctctctcttttccagtTATTCATTCACCAAACTCATCTGTAATTCCCTTACAAAGTTAACATTAAATTCCAATCAAAACCAGAGGGAAAAGGCCTAGTGTGAAGAAAagtaagtagtagtagtagaagtaggAAAAAAGCAAGTAACAATAAGCTGGCTGACTATTGGACACATCAACCTAAACAGCCCACATCACATTATAGCATCCAAGtggtttttgtgatcattgtgAGGTACCAGATATATGCaggaaatactgtatgtatcagagagagagaggacatgtTGGAAGAAATTAAACGATTAGGGCTAACAGGAGCAAAAGTAAAGAACATAGGCTACTGTAGTGTGGTAACAGTGGACAAGGCAGAAGATGCTCAGTCAGCTTCCTAATGAAAACAGCACTGATGAGGAAAATCTGACATAGTGGACACTTTAGGAGTTAACTAATTCCAGAAGATGGCAGTAGTGCAACATTAAAGATGCAATCTGCCTTTAAATcccgaagaagaagaagaagaagaagaagaagaagaagaaataataatTCCCTTACATTCCTTTTGATACCCGGTAAACGTAAACGAGGCAGAGTGAGACGTCCTGCCTTGTTTCCACCTCTCTGGTTGAACTTCCTGATTCCTCCTTCGCCCCGCCCTCGTCTTTGAAACGACAACAGCGCCAAACTTCAGGGTCCCAAACGGGAAAATGACTACTGGTGCCAAGGAGCCGCAATGGAGAAAGGTTCATTCCGCCACGGGAGTGATTCCGCGGTCCAGACACGGACACCGAGCAGTTGCCATACGGGAGCTAATTGTTGTATTCGGCGGTGGAAATGAAGGGATAGCGGAGGACCTTCATGTTTACAACACTGTCTCAAGGCAGTGGTTTCTGCCTGCGGTGAGGGGTGACATCCCACCCGGCTGTGCTTCCCATGGCTTCGTCTGTGAAGGCACTCGAATACTGGTCTTTGGTGGCATGGTTGAGTTTGGGAAATACACCAACAGCCTTTATGAACTTCAGGCTAGTCGCTGGCTGTGGAAGAAGCTGAAGCCCAGAGCACCCAGGAATGGCTTGCCTCCCTGCCCTCGGATTGGACACAGCTTCACTCTTGTGGGTAACAAGTGTTACCTGTTTGGAGGGCTGGCCAATGATAGTGAAGACCCCAACGGCAACGTACCAAGATACATGTGCGACTTCTATGAGCTGGAGCTGCAGTCGTCATCGGGGGCAAGAGGCTGGAGCATCCCAGAGACGAAGGGTGGTGGTCCCTCAGCACGGGAGTCCCACACCTCGGTTGCCTACACTGGCCTCGGCTCCCCAAAGCTCTACATCTTTGGAGGGATGCAAGGATGCCGGCTAGATGACCTCTGGCAGCTTGACCTTGACACAATGGTTTGGTCAACGCCTGAAACCAGGGGTTTCAGGCCACTTTCCAGAAGCCTTCACTCTGCCAGTGTCATTGGAAACAAGATGTATGTTTTTGGTGGCTGGATTCCTGTACCAGAGTCAGACGAACACAATGCTTTAGGAACTGAATGGATCTGCAGTGACTCCCTAACTGTACTCAACTTAGACACTATGATCTGGCAGAACCTGGGCCCAGAGCAGCAGGGCAATATCGAGTCCCAGCTGCAGATCCAGGGACCCCAGAGTGAGGATCCGTACGCCTGTAGGCCCAGAGCCAGGGCCGGCCACTGTGCTGCCACTGTCGGGTCCAGGCTTTACATTTGGAGCGGCCGTGACGGGTTCCGTAAGAGCTGGAACTACCAGGTCTGCTGCAAGGACCTCTGGTACCTGGAGACAGATCGACCAGCCGCCCCAGAGGCAGTGTTACTCATCAAATCCACAGTCAGCATGCTTCATGTGGCGTGGCGCCCCCTGGCGGCAGCAGACTGCTACATCCTTCAGATCCAGCCTGCACCTCCACCAGCCAAACCAGTCAGTCCAACTGGACTAGGTGGACTGGACGGGAACGGTAAAGACACTGCAGGTGTCCAGTCTCTTCAGCCTCCAACTGGAGGAACCACTAATAAAGAAGCGAAAGCATCAGCTCAGGATGCTTCAGCACAGCAGGAAACTACAGCGAAACTGTTCAGTGGCTCAGCAGAGACCAAAGCACAAGGAGGGAGGAGTGCTGGGAGGGAGACGGAGAAGGACCCTGACACAAAACGCTGCGGTGCTGGACAGGAGACGGCAGCAGCAGAGGTCGGAAGCTCAGCTCAGCGCCAGCCAGAGGAACAACCTGTTTCAGCTGACAAGAAAACCGATTTCTACGCCCCTACACATCAGAATCCAGATGAAGCCGTGTGGTTTGACGTTGGTGTGTTCAAAGCACTCTTCTCTGAGGTCAGCCACTACTTTCTACCCGCTGACAGCGAACAGGCGTCTGCAGCCATCAGCAGCCGACCGTCGCACACTAAAGAGCCCTTCCTCCAGAGGAATCTTGACTACCAAAGCAGAGAGAAGCAGGAGCTGGCTCCAGGTCAGACCTACAGGTTCAGAGTTGCAGGCATCAACTACTTTGGCCAGGGAGACTTCAGCCCAGTCAGCGAGTTCAAGACATGCCAACCTGGTTTCCCTGGAGCGCCATCTGCCGTCAAAATTACCAAGGCCAACGATTCGGTCAACATTACATGGGAGGCTCCCCCCTCTCCATCGGGCCGGATCCTCGAGTATTCCATGTACATGGCCGTGAAAAAGAGTCGCTCCACCAGCTCGGAGCGTCCAGGTCAGATGTCCTTCATCAGAATCTACCGCGGCACCAAGATGTCCTGCTCGGTCAGCTCCACCCACCTGGATAACGCCCAGATCGACTGCTCGGCCTCCAACCGGCCAGCTGTGGTCTTCCGCATCGCTGCTAAGAATGAGCAGGGCTACGGTCCGGCCACGCAGATCCGCTGGATTCAAGATCCTAGTAAATTGCGAACGTCTGCATCCAAAGCCGACAGCAATGCTGAGGCTGACCAGGATGCTGCTGACAGCTCCagctaaaaaaaatgttttggacCAATGGCACCGTGTTTTGGAAAGACAGTATGTGCTCTCAGGAAGGTGGCAATGTTTGCCAATCAGATGTAAATTTGCTAGatatttttgttaatttattttttttatgtaattaatTATTCCCTTGTAAATAGATTTTCATAGGAAGATTGACCACTTGGCTACTTTAGTTAAACCAATGTTTTGTTAAGTAATAGGATGTAGACTAAACTACAAGtatgatttaagatttaaaaaaatcttcaaaGGTTGGAGGTGCCTTAGAGTTTATTGCAACAGCCACTGATGCtgctttatacagtatgttgtggTTTTgcatgaaactttttttttagcgTGGACCACTTTTACAATCCTATTGACACAGTGAGGTTATACAATACCAGTTATCTTTACAGTAGAAAtgttattgttatatatattatagatcATTTACTGTGATTCAGGTTTGGTTTAAGATCTTTGTTAATGTGTTTTCTCACTGTACACACAACCATGTTGACTACAAACATGTTTACTATCCGTTACATTTCTGCATcacatttgttgttttatgattattttattatcaCTACCACCAAATTGTTCAGATTGTTTACAAGttacaacttttctttttttttaaatatctctcataaaaaaaaaaaaataaataaaaaaaatcaatccaaATCAAAAAATGGATGCTGACTGCAACCAAAGAGCAGAGCACTACTAATGTTTCTGATATGAATTAAAGGTATCAAAAATGCCCCAGATATTACAGGAAGAGATGTGCGTGTTAACATTATTATTGTCTCTGGTTTGACCCGCTCACCATTTAGTGGGCAAGAAGTGTGATTATTATCTTCCCTATCCTCCTCCATCATGTCTGGACTCTGGATTATTACAGGTCTTTTTAACCAGTGTGGTGAAGGAACATATGGGGGGATTACTATCCAGACCTCAAATCAATGAGACCAAGTGCTGCGTCTCTTCATGgacttaataaaaaaagattccGTGGCTGAAGAAGATTTGGTCAGGATAGGCATACAGAGTATTGTTTAGATTAAACATTATGCATTTGATCAAGCTGAAGACTCATTATTTCCCTTGAATAACAATTAAGATAAGAGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310618 lncRNA downstream 366583 19852964 ~ 19905943 (-) True G228946
TU310623 lncRNA downstream 390447 19877097 ~ 19882079 (-) True G228947
TU310627 lncRNA downstream 413663 19858103 ~ 19858863 (-) True G228949
XR_005638134.1 lncRNA downstream 554114 19717222 ~ 19718412 (-) True LOC120553214
TU310533 lncRNA downstream 703167 19550617 ~ 19569359 (-) True G228885
TU310720 lncRNA upstream 14516 20301102 ~ 20301438 (-) False cdk17
TU310764 lncRNA upstream 69050 20355636 ~ 20357563 (-) True G229062
TU310777 lncRNA upstream 95879 20382465 ~ 20391508 (-) True G229071
TU310783 lncRNA upstream 147569 20434155 ~ 20437536 (-) True G229076
TU310788 lncRNA upstream 155734 20442320 ~ 20450128 (-) False G229079
XM_039791787.1 mRNA downstream 382 20261404 ~ 20272144 (-) False cep83
XM_039791786.1 mRNA downstream 389 20260025 ~ 20272137 (-) True cep83
XM_039791783.1 mRNA downstream 394 20260025 ~ 20272132 (-) False cep83
XM_039791784.1 mRNA downstream 1621 20260025 ~ 20270905 (-) False cep83
XM_039792445.1 mRNA downstream 150133 20066895 ~ 20122393 (-) True rerg
XM_039791217.1 mRNA upstream 14506 20301092 ~ 20354627 (-) True cdk17
XM_039791001.1 mRNA upstream 107480 20394066 ~ 20409676 (-) False mcm10
XM_039791000.1 mRNA upstream 107480 20394066 ~ 20409676 (-) True mcm10
XM_039792012.1 mRNA upstream 123609 20410195 ~ 20430496 (-) False optn
XM_039792011.1 mRNA upstream 123609 20410195 ~ 20420877 (-) True optn
TU310704 other downstream 150187 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 433224 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 433224 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 465428 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 819498 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 671071 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 777105 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1484502 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1484550 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2818174 23104760 ~ 23239573 (-) True G229716

Expression Profile