RNA id: XM_039791216.1



Basic Information


Item Value
RNA id XM_039791216.1
length 3190
RNA type mRNA
GC content 0.49
exon number 5
gene id elk3
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20287264 ~ 20298086 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacacagaCGGGAATACTGCGCCAAAGGAAGTGCGCCGGTTCTCCGTCTTCGCGTTCCGACTTCCTGCTCTGAGGCAGGAGAGAGAAAAGCTGCGGATCCGCTTTCAGACAGCAGCAGGAGCATGGAGCccctacacaacacacacacaccgctataagacacaaacatacacacatcacacacaggcagacgGGTAGAGGAGCAGCGGCCGTCCACAGCAGGATCGCCTGCGTCTCTGGTGTCACCCCGTCATGGAGAGTTCCATCACACTCTGGCAGTTCCTGCTGCAGCTGCTACTCGACAAAAGCCACAAACATCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCAGAAGAAGTGGCCAAGCTGTGGGGGCTGCGCAAGAACAAGACCAACATGAACTATGACAAGCTGAGCAGAGCTCTGCGCTACTACTACGACAAAAACATCATCAAGAAGGTGATCGGCCAGAAGTTCGTCTACAAGTTTGTGTCGTCCCCCGAGATTCTGATGATGGACCCTGCGGTGGTGGAGTCAGGCCGCAGCGGCGAGGAAAGTGGGGGTGCGACATCAGAGCCTGAGGCTGAAGACGAGGATGGGGGTGGGAGAAACCAATACCTTCACTCCAGCCTGTACTCCTCCTTCACCGTCGGCTCACCGCAGCACTCCTTGGAACCGCATCGGCCGATCAAGACGGAGCCCAGATCCGATCACCACGGCGACAGCTCCTCTGTCATCCGATTCGTAACCAACCGCGGCCACTCCTCGCtatcccccaccccacccccatcCTCGGCCGACACCTCCGATTCCTCCAGATCGTCTCCCCGGCAGGCCCGctcttcctcctgctcctcctccccgCCGCAGAGCCCCGCCCACACACTGTGGAGGGGGCGTAGCCAGAGCACAGAGACTAATGCGATAGAGCAGAGCGCTCAGCCTCTAAACCTGTCGTCGGgtcacagggagagagagaggtcacaGGGCACGGCGATGCCAGAGAGGAGGAGATTGGCCAGTAGCGTGCCTTTAAAAAGCAGAAAACCCAAAGGCTTGGAAATCTCcgcttcctctctcctcctgacAGGAAGTGACCTCGTCTCCAGAGCTCTCAACAGCCCGGCGCTGCCTTCAGGCTCCCTGACCGCTGCCTTCCTCACCACACAGACTCCGTCTGGTCTGCTGCTCACTCCCAGTCCTCTACTCTCCAATATCCATTTCTGGTCCAACCTGAGTCCAGTGGGACCACTTAGCCCTGCACAACTGCAGAGCCATGCCCCCCTCtttcagTTCCCCTCACTGCTGAATGGAGTCATCCCTGTGCCTTTCACCAGCATGGACGctccctctcctctgctgctctccCCAAGCTCCCACAAGTCCTGATCCCCGAGCTTCAAGAGCAAACTAGGCCAAACCGGGCCGGATCAGCACAGACCAGTACCGAGCCAATCTGCTTTAGACTTTGACAATGAACCACACAGGAGTCAGACTTCCTCTGAGTCCAATTACACTTTCATCTGAAACCTGTTTCTTTGAATTTACAAATGAAGAAACAGGAGCTTTACTCTGAAGATTTGCTCTCTGAGAAGAGTATTTGCGTTAaacatttctttgtgtgtttactACAGTTCAACTGCTCATGTCATTTACATTTGTTTCTTCATCATCATACAAAGAAATTGACTGGAGGTCAGACCTCATCATGTTTCTTATCTTATTATCTCATCTCATTCCACTAGGTTCAAAGTTCAGTGATACAGACCAGTTGCAATTTCATTAGTGTTAGCGCTATTTTTCGCCTCTGCTCTGGCTATTGTCAATATCCACACCACTGACTCAAACAACGGAGATCTGGAGAAATCCTTTTTGTTTGGAATTATAAAATAAGAACTCAAGAATGACGGATGCTCAAGTACAGCTCATTTAAGTAAATACATGTTCACCATGCTACTGTACAGTTAAAGGAAATACAGTAATTTGCTTTCCTACTATGAGTTACCcgcaatttccaccaactgcggaacggctgcggatccgctccggaacggcggcggagtcaataggtttccattaaagtcaatgtgtgtattttcactgaCTGCAGATACGCAGAGTTTCTATTTTTGACTgatgccggagagctccgcagcaattcagcacagggcAGATTGGGCGGGACAGGAATAATGGCGGAGACTGGCCTGAAgtcagcacagagttgtttcccctctactcctctggatggaaacaaactacATCCTGTTATGTCGCGCGATCATATGTGAATTCGcaagatctcgtgggtcctcgtgacttcagctgtcagtcatggacGCAGCTGTTCCGCAACAAAtacggacctggtgggtattgaaggacggcagagcacggagccgacacgcagcggagccgatccgcagccgttccgcagttggtggaCATTGCGGTTAGCGTTAGACAAGAAAATTGACACCCCCCTCTCTCATGATTGTAGGCTCAATATGAAGCTATATGCAGGAGACGGTTagataaagactggaagcacaGAAACCTTACTCTGTCCAAAGGTGACTACTAGCTAGCAGCttactaattaacacattaacctttatagaaatttaaaaaaaacgacaaTTTGTAGTTTTATAGGGGATTGAAGGTAGAACCCAGGAGAAATAGTTTGGCACAAAACCTCTGTAAAACgatttttacactttggtttttgtacagattaaacaaacaccaacaataatttctttatttgtgAGCTGAGGTAAGGTGGACTTTGATAACTTTGGGCAGAGCCAGGCTGGCGGTttcaagtctttatgctaagctaaccagctgctggctgtaaatACATATATAACTGACAAATATAAATAGTGATGTAAATCTTCTCATCTTACACTCAGCAAGAAAGCCCGATTccaaaaatgtcacatttttcctTTAAATTTGGACATAAAATGGGGCCATAACTGGATGATTAAACGCCATAGCCATGGAAGATATTAAGTAGTGGGTGATTGTAATTTTTCCCCTGTGCCTTCGCCTTCCTTTAAATTGACCAAATCTTCAATGTGAACAATTTTGGGGTGTCTCTGAGTCTCATTTATCAATCTTTTtaggggtt

Function


GO: NA

KEGG:

id description
K09430 ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2)

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU310649 lncRNA upstream 62079 20203341 ~ 20225185 (+) False LOC120553418
XR_005638180.1 lncRNA upstream 365410 19921100 ~ 19921854 (+) True LOC120553527
TU310591 lncRNA upstream 370947 19916115 ~ 19916317 (+) True G228922
TU310573 lncRNA upstream 381329 19852928 ~ 19905935 (+) False LOC120553104
TU310674 lncRNA downstream 648 20298734 ~ 20301441 (+) True G228989
TU310756 lncRNA downstream 141372 20439458 ~ 20448557 (+) True G229058
TU310762 lncRNA downstream 144581 20442667 ~ 20454788 (+) True G229060
TU310821 lncRNA downstream 264977 20563063 ~ 20565180 (+) True G229108
TU310845 lncRNA downstream 309146 20607232 ~ 20607530 (+) True G229130
XM_039792449.1 mRNA upstream 26836 20212787 ~ 20260428 (+) True plxnc1
XM_039791790.1 mRNA upstream 83334 20190928 ~ 20203930 (+) True LOC120553418
XM_039792448.1 mRNA upstream 96356 20185082 ~ 20190908 (+) True LOC120553751
XM_039792447.1 mRNA upstream 102901 20174451 ~ 20184363 (+) True LOC120553750
XM_039792446.1 mRNA upstream 113857 20168859 ~ 20173407 (+) True LOC120553749
XM_039792164.1 mRNA downstream 57530 20355616 ~ 20362518 (+) True LOC120553583
XM_039792166.1 mRNA downstream 59245 20357331 ~ 20362520 (+) False LOC120553583
XM_039792163.1 mRNA downstream 66717 20364803 ~ 20376348 (+) True LOC120553582
XM_039791158.1 mRNA downstream 84307 20382393 ~ 20391403 (+) True ucmaa
XM_039792013.1 mRNA downstream 124751 20422837 ~ 20434548 (+) True ccdc3a
TU310663 other upstream 113865 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 113865 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 301616 19982248 ~ 19985648 (+) True G228924
XR_005638131.1 other upstream 478852 19631947 ~ 19808412 (+) False LOC120553210
TU310736 other downstream 84340 20382426 ~ 20391406 (+) False ucmaa
unassigned_transcript_1504 other downstream 1281227 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 1281818 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 1282166 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 1282411 21580497 ~ 21580607 (+) True trnal-caa_28

Expression Profile


XM_039791216.1 Expression in all Baseline Samples

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XM_039791216.1 Expression in each Bioproject

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XM_039791216.1 Expression in each Sample
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