RNA id: XM_039791221.1


Basic Information

Item Value
RNA id XM_039791221.1
length 3040
RNA type mRNA
GC content 0.43
exon number 9
gene id depdc4
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10638588 ~ 10643771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGGTTAATTTGACTCCGCGTTTTAGAAGGTTGAACAGCCAAACGAGGAGTTTTCGTGAAAATATACAGCATGGTTTCTCGGGGCCCTTCGGTGCCACCCAGCTGTGGCACAACATCATCCAGGCCCTGCAAACCCAGGTGGAGGTGCGTCGCTGTAGAAGGCATCTACGTGTTCATGCCGAATGTTTCACAGGCTCAGACGCTGTGGATGCCGTCCTCAGTTATTTGATGCAGAATGTGGTGTTTTGCACAAGTGAAGTGTCTCGCCTCAAAGCTGCTCGACTCTGCCAGGCTCTGATGGAGGCCAAGGTGTTTGAACCAGTGGGTACCAAGCTGTTTTGCAAAGACAAAGAAGTGACCTTTGAGGACAGCAGCTGCAGCCTTTACCGTTTCCTGGAATATAAAGTGTTAGCCAATTCTGCCATGAAGGAGTCTGATTGCCATAGTGACACAGAAAACATGCCAGCAGAGGAACAGGGGctaaagaggaagaagagctcCAGGAGGCTGAATGAACTGAGGACGATCTCTAATCCTCTTGCTGTTGGACCATCAGACAGGAGGGTTGAGAGGCTGCTGAGGACCATCAACCTGCGACCAACCTTGTCTCCATCTTTAAACGCTACCCCCACTACTTCTGCCTTTCTGTCCAAAACTGTGGTGGCTGAGGTTTGGAAGCAGCAGACACTACTGCAGCTGCTGCAGATCGTAGAGCTGCCAATGCTGGACTGCATCCTGACCTCTCCTGCCAGGGTTCAGCTCAGTGCCTGCAGAGCTCCTCTGGCCACCCAGGACCTGGTTATATCTAACACATGTCTGGAGAGAGAGCTGCCCAACGCCCTAAATCTGCCCCAgttggaTGGGTGGCTGTCGGCAGCGGCAGACTGCTTGGAGCTCTTTCCCGACCAGCTGATCGTGGTTGCAGGGGAACAGCTCAGCCAACAAGGTGGCAATGCCTTTTCAGAAGATGACCAGGCAGAACAGATGGCAAGCCAAAAGAGACTGCTCTTTGACACCATTGCCAAGTACTACAGTGGACAGGAAaaagctccgctgctctcaGGACGCTACCTTGACATACATGCTGCAATTCTGAATTTGCTGGaTGAAGGGAAGTTGCAGGATGCCATCAAAGCATCTCAGTTGTGTTTTCGACTGCTGGAGACAAGTGTGAGAGATGAACTCAGGAGACTACTGGCCTTTATGGGCACAGCAGCTCGCCCAGATGCTTGCCGTCTTCAAAAACAGATTGATAACAGGGCCTTGGTCAGCCGCACTTTTCAGAGAGCAATTGTCCAGAATCACGAACTGACGCGATCCCAAAGTGAAACCCTGGTGCTGTTTCTCATGGACAAATGCACTGAGCTCTTCAAGACTCCTATGTCCCTTATTGAAGCTGTGAGGAGAACACTGAGGACTATGCAGCAGGGAAAAGACCCTGACTCAATTGCCACGTTCACCTTCTGCCAGCAGGTGACGCCACAGGAGTATGAGGATCAGCGAGAGGCCACCACCCTGGAGAGCCTCAAACAGCTTCTTCATGACATTTCCTCCAGCAAAACCATACCTGtcaaggagaggaggaggctgCTCAAAGAGTTTGAAAAACATCACCCCGTGGTTTTCATCCAGCATTTATCCAGCACCTTCTGAAAACACACAACTGAAGGGTTATTGTACCACTGAAAAGCTAGTTTGCAGTGGTACAGCGCTTACACTGAAGAATGATAATTTAATGCACATCATGGGTAAAATTTTAAGGATAGACACCTACAGCATGATCGAATGGCTTAAAATTGCTTTAAGTCACAAGATGCCTACAATAGTTGTTTTATTTGTTGATATATTATTAAGTCTGTCTTGTTACATCCCTGTAGCATTGGATGCATTGTCTATCTGATCGACATTTCATTTTGATGAAGCATTTTGAGATACAACTCTGCCCAAGTCATAGGTTTGGATGGTTTTGCACTAGTTCATTAACAATGAAATAGCAATTCATCTATGATATCTGGTGCCTAAACGTGTGTAGACTGTGAGCCGTGGTGGCTTCAGCTGTTGGTAGCGGTTGGCATTTTGTGTTAAGTGAggacacatttttttattttacattaatgaCAATTATTTGATGTTGAAGAGAtgaataatgttttaaaagggCTTTTGTGCACTAGATTGTCCTAGCATTGCTGTGGAATACAGTATATGCAAAGTAAAAGGGATTACTGAAAAAACTACTCTTGAGTTTGATCAGCCATTTAGTCAGCTGTTTTGAGGCTGCAATTGGTAAACAGCTTGTGCACTAATTGATGTACTTCTTGGTCCAGGTATTGATACTGTATTTGGATAAACCTATGTGTTCATTAAGATCTATTTAAGCTGATTTGAGCTTTGGTAATGGAAATGTGGTTTGCAGAAGTAATTCTGTGCACTTTGATCAGGCATTAATATTTCTACATGTCAAATGAAGAACAACAATATTATGGCagccttttttgttttactgaagCATACTCTAGTATGGTTAAGGAAAAATACTGGTAAACGCAACACTAATGTAGCTGAATAAAGTTTAATTCTAACTTCATTCTGTTAGAGATGAAGACATTTTTCTCTGATTTGTAAAATTAAGACTAATGAAATGAAAGCAGTAAGGGTACAATAATGTATTAGGCTAACAATAGCTCAGGTTAATAGCATTATTTTTAAGGGTTTTTAAGCTTGTTTTTAGTGCCATATCTTGGTCAAATGTCTTAATTGTAACTTTTTAGGATTTTACTTGAAAAATGGACATGATTCCTTTTACGAAAGATGTGATAATAACTTAATGTTTTACGCTACTAATTTAATCTTTGGTTAAGCATAATGCCTCAGTTGGATTGTATTATTTTACTTTGTGAAGCCATGGCCATGTAAAAGTAATTTACAGTCAAATCTCATTTAAGTCAGCATCTTTTGTTCTTTACGTACACTAAAATCATGTTAGATTGCACTTTATGATGCTGAAACGTCTAATAAAGGTTTCATTCAAACAAGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308048 lncRNA upstream 8376 10628808 ~ 10630212 (+) True G227108
TU308047 lncRNA upstream 10606 10625446 ~ 10627982 (+) True G227107
TU308026 lncRNA upstream 99899 10538196 ~ 10538689 (+) True G227088
XR_005638107.1 lncRNA upstream 701995 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 770503 9867575 ~ 9868085 (+) True G226930
TU308058 lncRNA downstream 21938 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 62139 10705910 ~ 10709545 (+) True G227139
XR_005638094.1 lncRNA downstream 117482 10761253 ~ 10770671 (+) True LOC120553079
TU308111 lncRNA downstream 198785 10842556 ~ 10851804 (+) True G227152
TU308112 lncRNA downstream 198785 10842556 ~ 10851951 (+) False G227152
XM_039791996.1 mRNA upstream 116351 10288477 ~ 10522237 (+) True anks1b
XM_039791997.1 mRNA upstream 116351 10289026 ~ 10522237 (+) False anks1b
XM_039791998.1 mRNA upstream 116351 10349147 ~ 10522237 (+) False anks1b
XM_039792000.1 mRNA upstream 116351 10349963 ~ 10522237 (+) False anks1b
XM_039792001.1 mRNA upstream 116351 10377618 ~ 10522237 (+) False anks1b
XM_039791219.1 mRNA downstream 4550 10648321 ~ 10659011 (+) True scyl2
XM_039791220.1 mRNA downstream 4550 10648321 ~ 10659011 (+) False scyl2
XM_039791229.1 mRNA downstream 28277 10672048 ~ 10674051 (+) True si:dkeyp-38g8.5
XM_039791053.1 mRNA downstream 304515 10948286 ~ 10986201 (+) True impdh1b
XM_039791054.1 mRNA downstream 304515 10948286 ~ 10986201 (+) False impdh1b
unassigned_transcript_1483 other upstream 443382 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 444072 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 446176 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 1397239 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1465368 9134594 ~ 9173220 (+) True lhfpl3
TU308063 other downstream 53483 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 88298 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 304514 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 459065 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 459065 11102836 ~ 11112905 (+) False G227216

Expression Profile