RNA id: XM_039791229.1


Basic Information

Item Value
RNA id XM_039791229.1
length 1066
RNA type mRNA
GC content 0.49
exon number 4
gene id si:dkeyp-38g8.5
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10672048 ~ 10674051 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCTGAAGGAAGAACGAGCAGGGAACGAGTGTTTTCTTACAAAGGGCACTTGATAAAGACACTAAAacgaaaaagagaaaaatggaAATCGAGGATCACTCTTACACGAGCACCACTTACGATAAAGTCAACCCCGTAGAGTTCACATATAAAATGAGTGCAAACGAAATTGAAGAATTTGTAAAGCTGAGGGTTTCAAACCATTACCTCTTCTCTGGAAGGAGAAATACTTCCATGTGGGCATGGAGGGCCATCCTGAAACATATGGGCTTGCAACACAAGATGACCCATAGTCAAGCATCCAAAAAGTGGGAAAACTTGAAGAAGAGATACAAGGACCTAAAGAACCCTCCAGATGGGGTGAAAGTGTTCCCTGAAACATGGCCTTATTTCAACCTGTTAGACGATGCCATGGAGGGTCGACTGAAAGGCAGCGCCCCCATCCTCAAAGCTCTCCCCACCAATGGGGATTTCTTACCCATCTACGAACCCAAGAAAAGGAAGGCATCCATAGTGATAAACTCCCCTGTGCCTTCGTTAGCAGGCGGGCCAGAGATCGAGGTTTCCCTGAACGGagatgaggatgaggaggaggcacAGGACGAAGGAAGCCAGGGAATGGATCATACCATGCAAGAGATGGAGCACGACAGGAACACAATGGACAGCGAAAGACAGGCgatggagagggagaaacagGTGATAGAGAGGGAGCGGCTGGTACTGCAGAGGGAGAGAGCTGTGCTGGACAGGGAAGTCGCCGCTCTGGACCGAGACCGAGTCtcgctggagagagagagggcgacaatagagagagaaaaggcagtgatggagagggagagggcaatggtggagagggacagagacgcTGTGAGCAGGGACCGGCTGGCTCTGGAGCGAGAGAAAGCCAGGCTGGAGAAAGTTAAAGAAAGGACTGAGGAGGTTACAGAAGAGAGCAGCAAGGTGAACCACGCAGATGTCTTggacaggaaggagagattcCTCAACTTGTTTGAAAAACTTATTGAAAATTTTTGATTCATGGGGGTTTTTCTGCACAAAACC

Function

GO:

id name namespace
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03430 Mismatch repair
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308058 lncRNA upstream 4768 10665709 ~ 10667280 (+) True G227116
TU308048 lncRNA upstream 41836 10628808 ~ 10630212 (+) True G227108
TU308047 lncRNA upstream 44066 10625446 ~ 10627982 (+) True G227107
TU308026 lncRNA upstream 133359 10538196 ~ 10538689 (+) True G227088
XR_005638107.1 lncRNA upstream 735455 9934175 ~ 9936593 (+) True LOC120553125
TU308091 lncRNA downstream 31859 10705910 ~ 10709545 (+) True G227139
XR_005638094.1 lncRNA downstream 87202 10761253 ~ 10770671 (+) True LOC120553079
TU308111 lncRNA downstream 168505 10842556 ~ 10851804 (+) True G227152
TU308112 lncRNA downstream 168505 10842556 ~ 10851951 (+) False G227152
TU308118 lncRNA downstream 197996 10872047 ~ 10872679 (+) True G227155
XM_039791219.1 mRNA upstream 13037 10648321 ~ 10659011 (+) True scyl2
XM_039791220.1 mRNA upstream 13037 10648321 ~ 10659011 (+) False scyl2
XM_039791221.1 mRNA upstream 28277 10638588 ~ 10643771 (+) True depdc4
XM_039791998.1 mRNA upstream 149811 10349147 ~ 10522237 (+) False anks1b
XM_039791053.1 mRNA downstream 274235 10948286 ~ 10986201 (+) True impdh1b
XM_039791054.1 mRNA downstream 274235 10948286 ~ 10986201 (+) False impdh1b
XM_039791055.1 mRNA downstream 274236 10948287 ~ 10986201 (+) False impdh1b
XM_039791056.1 mRNA downstream 274236 10948287 ~ 10986201 (+) False impdh1b
XM_039791058.1 mRNA downstream 277212 10951263 ~ 10986201 (+) False impdh1b
unassigned_transcript_1483 other upstream 476842 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 477532 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 479636 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 1430699 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1498828 9134594 ~ 9173220 (+) True lhfpl3
TU308063 other downstream 23203 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 58018 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 274234 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 428785 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 428785 11102836 ~ 11112905 (+) False G227216

Expression Profile