RNA id: XM_039791234.1


Basic Information

Item Value
RNA id XM_039791234.1
length 4119
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120553145
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16635871 ~ 16652133 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATGACTGCTGGGGAGACGGCAGCGCATCTATGTGGTCCGCCTGACACTTGATCGAGGGGAGAAATGCGCCCTTAACAGCCGCGGTGAAGACGGGAAGGGAAGGGCACAGGGAACACGTGAATCTCTCTCTACACTCTCGCCAACCTGCTTTTGGACTTCGCCGTTTTTGTTTCCCCCCCTCATGCAGAAGCCGCGCGTTTTGCCGTGGAAGAAGCCTAGAACTGATTTCTCATCAACTGCGTAAAAAATAAGAAGACCACACATTGTTGACTGGCTTTATGTTGCGCGCTGGGGCTCGCTCGTCGTTGGAGCGGCGCACTTGATGGAAATATAGACAACACATAACCTACTGCTTCGAGGGCTATCATGGTTAAATCGGGTAGGAATGGACTGGGCTGTGGACTCAGGAAGCTAGTGACGACAATCAATGAGGACACCCATCTTTGAAGAAAGAGCAGAATTTTCATGGATACCTATGAATGTTCTTAACCCAAGTCCTTTGAGGTATAATATCAGTCCATTCTTTTTTCCCACTCCCACATTCTCGGGTCTGCCTGAACTGCAGCCTTGGCCCCAGACCCTGACACCCGCGGGCAACACAGAGTGATTGCTCATTACATCCAAGGGCGTCTACAcagcaagacaaaaaaaacagggagCCCTGCTGCAGTTGGTGGTGGCGGTGGCAGGGGCAGTGAGTCAATCGCCTCAGCAGCTGCAGCAAATGATTCATTATTTGTGAAGTTAACAGCTCAGACCACTTAATCTACAAGGACCAATTTCTTACTGGAGGGAATCGGTCCAATATGAAGGACGTGTCATTTGTGGATCGTCTCTTTGTCGGCTTGGCCATGGCCTCTTTTGTTGTGGCCACAGAGGAGAGGCCCGATTGCCCAAAGCTCTGTGTATGTGAGATTAGACCCTGGTTTTCTCCGAGTTCAGTGTACATGGAGGCACAGACAGTTGACTGTAATGATGTGGGACTCTTTAGCCTACCGGAACAATTACCGGTGGGCACACAAGTACTATTACTGCAAACAAACAATGTTGCCAAGATTGACAGACCCTTGGATTACCTGGCCAACATCACAGAGATTGATTTATCGCAAAACAACTTATCCTCTATCAGTGACGTCCACCTGGGGAATCTTCCTCAGCTGCTATCCCTTCATATGGAGGAAAATTGGATACGAGAGTTGCCTGAGCGAAGTCTTGCTGAGGTGGCTAACCTTCAGGAGCTCTACATGAATCACAACCTCATCTCATCCATTTCCCCGATGGCTTTCCAGGGTCTCAGCAATCTTGCGCGGCTCCACCTCAATTCTAACAGGCTGAAGGCCATTATAAGAGAGTGGTTCGACCCCATGCCAAATCTGGAGATCCTGATGATAGGCGAGAATCCTATTCTTTCTATTGATGATATGAACTTCAAACCTCTCAGTAATCTCCGCAGTCTTGTTCTCACTAGAATGAACCTGTCTCAGCTTCCTGACGATGCATTGGCTGGTCTTGATAACTTGGAGAGCATCTCGTTCTATGATAATATTTTTCCTGAGGTGCCTCATTCTGCcctgaaaaatgcaaaaaatcTTAAGTTCTTGGACCTAAATAAAAACCCAATTGCGAGGATACAGAGAGGGGACTTTGTGGATATGTTCCATCTGAAAGAACTGGGGATTAATAGCATGCCAGAGCTAGTTTCCATCGACAGCTTTGCCCTCAATAACCTTCCTGAGCTGACCAAAATAGAAGCCACCAACAATCCTAAACTCTCCTATATCCATCCTAATGCTTTCTACAAACTACCACGGCTGGAAACCCTAATGCTAAATGGCAATGCTCTCAGTGCCCTCCACAGGATTACTGTCGAGTCCCTCCCAAATCTCAGAGAGGTTAGCATGCACAGCAACCCCATCCGCTGTGACTGCGTAGTCCGCTGGATGAACATGAACAAGACCAACCTTCGCTTCATGGAGCCTGATTCACTGTACTGTGTGGAGCCCCCGGAGTACGAAGGCCAGCATGTCCGACAGGTGCACTTCAGGGAgatgatggagatttgtctgcCACTCATCTCTCCCGAAAGCATGCCTGGGCATATTAAAGCACAGAATGGGAGCTCAGTGTCACTCCATTGTCGGGCCTTCGCTGAACCAGAGCCAGACATCTACTGGATCACCCCGTCTGGTACCAGGGTCCTGCCTAACACCGTGTCTGACAAGTTCTACATGCACCCAGAGGGAACCTTTGACATCTATGATATAACAGAAAACGAAGCTGGTGTTTACACTTGTGTTGCCCATAATCTGGTTGGAGCTGATCTTAAATCTGTTTCAGTAGAGGTGAATGGATATTTTCCCCAACCTGAAAATGGGTCTCTGAATGTCATGATCAAATCAGTGAAGACAAACTCCATCCTGGTTTCATGGAAGGCCAGCCGTGGCACCCTGGCTCCCAACATTAAATGGTACACAGGGTCAGATGCTAACCATCCCACCACGGCGTTTACCACCAGGGTTCCCTCTGACGTCCAGGTCTACAACCTCACGCATCTCAGCCCCGCCACTCTGTACAAAGTCTGTGTGGATGTCGGCAGCATCCACTACAACCATGACACCAAATGTGTCAATGTCACCACTAAGGGATTAGAGCTGGCAGCCAAGGACATAGAAAAATGGGACGCAGCACTAATCACCGTCTTCGGTGTGCTCTTGGCTGCGATTTCAGTGGCATGTCTGCTTATTTATGTGTCTCTGAGGAACCACCACCTTTATGGGGATATAAGGAAATGCGACTCCAAAGCTTCGCTGACACAAGTGGAAGCTACCGGTACGCACTCTCCTTTCTTTACAAAGCTGTGGGTTTCGGGTAAGGGACTGCCAAGTGGAGTCAAAGTGAAAGCCACAGTCATAAATGTATCTGACAATGTCTTTTAAGAAGCGCAGCTTTGTAGAGCACCACACACCAACTACTGAATGGACAAGGCCATGGGCAGGGGTGGACAAATCTATAATACTGTTTGAAAGGCATACCCATTGCTGGTCCCTGGCTCAGATACACTGGCAAAACTATTATCGGACTGGGATGGAACAGTTTAAAATAGACTACATGCTCTCCCAGTGTCAACCCCAGCTGAAATGGTGGCTTTGGTAATCGTTCCATCAAACCAAGCTAACATCATCAGAAAGGGGCATTTACTGCAAAACAATATATTTCAGTACTATTCATAAAGAGATGCAGGCAGAGTAAAGAAAGTAAAGATGATGATGGTCAACTATCTTGTAATTGACTGTTAAATGTGTTCTGAGTTGTGGAACTGTTCGTGTGGTCCCAAGCAATACCGTCTGTGCTTTGTCAAACATCCATAGACGAGTTAGAGAAACAGTAATAACACCTGTCTATTATGGGAAGGGAGATTTAGTAGAGTAGACAAATTACAGTGACTATGGTGTAAGCCTTTTGATGAAATATAGACCCCCTTTTCTATTTAAAATGGATTCTTGATTTTTCATGGAAATATTGTTATATATTCTATTATGTTGATGTAATGACAAATCCTCTGTATCTGAACAGTTTGAATAGGTTTTAAATTAAGGCAAGGAGCAGACTACTTTTGATTACAACGTCACATTAAGCTTAATGAAATTCAGCTACAAAATGAGTATGTTGAGAGGACATTTGCCAAATGGCTGTTTATGCTGTGTAGTTCTCATTGCAACGGTGACTAGGAAAAAATTGCGTTGGACTAAAATATAACAGGTTGATTAAAACTGAGGTGATTGATGTGTTGTCTCCTCATGAAGCGGTCTGTCATGCCCTGGTAAGTGCCTACAACCAGAACTACATGAGGTAAACAGAGAAGAAACTGAAGAAACAGCAAAACATGGCCATGTCATCATTGCAGAATCACAAGCTATTCTCTGGTACTTTTAGTGAAAATACTTTCTCAGTATTTTTAGcatacatattttaaaaaaaacatttcgtTGTTGCTTTGGGTGTAAAGTTAAAAAGCCATTTTTATATTAACTGTACTATATGTGATCAATGGGCACAACAGACTTATTAAGAAAAGtgctaagaaaaaaataaatgtcattgTTCCTTTTACAAACAA

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309734 lncRNA downstream 99578 16536018 ~ 16536293 (-) True G228283
TU309647 lncRNA downstream 411722 16216115 ~ 16224149 (-) True G228221
TU309501 lncRNA downstream 1104432 15531131 ~ 15531439 (-) True G228120
TU309482 lncRNA downstream 1125089 15494704 ~ 15510782 (-) False G228111
TU309741 lncRNA upstream 94610 16746743 ~ 16747040 (-) True G228290
TU309755 lncRNA upstream 172696 16824829 ~ 16831239 (-) True G228295
TU309834 lncRNA upstream 262474 16914607 ~ 16949806 (-) True G228360
TU309840 lncRNA upstream 300810 16952943 ~ 17007000 (-) False G228363
TU309837 lncRNA upstream 351869 17004002 ~ 17007000 (-) True G228363
XM_039792229.1 mRNA downstream 306263 16322115 ~ 16329608 (-) True ifrd1
XM_039791331.1 mRNA downstream 470966 16063869 ~ 16164905 (-) False foxp2
XM_039791328.1 mRNA downstream 470967 16063870 ~ 16164904 (-) False foxp2
XM_039791329.1 mRNA downstream 470967 16063870 ~ 16164904 (-) False foxp2
XM_039791335.1 mRNA downstream 470968 16063869 ~ 16164903 (-) False foxp2
XM_039791733.1 mRNA upstream 202859 16854992 ~ 16866194 (-) False LOC120553389
XM_039791732.1 mRNA upstream 202859 16854992 ~ 16866194 (-) True LOC120553389
XM_039791734.1 mRNA upstream 202859 16854992 ~ 16865508 (-) False LOC120553389
XM_039791736.1 mRNA upstream 215698 16867831 ~ 16868673 (-) True LOC120553391
XM_039792197.1 mRNA upstream 217603 16869736 ~ 16880178 (-) True dhx57
TU309610 other downstream 844018 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1547542 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1574442 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 2826192 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 2976599 13651662 ~ 13659272 (-) True LOC120553486
TU309744 other upstream 96709 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 642989 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 1178539 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 1178539 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1717542 18369675 ~ 18421407 (-) False gramd4a

Expression Profile