RNA id: XM_039791244.1


Basic Information

Item Value
RNA id XM_039791244.1
length 5077
RNA type mRNA
GC content 0.49
exon number 2
gene id lrrc4.1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11362763 ~ 11367955 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagagaaagagtgtgagagagcgagagagcaagAGATATCCAAGCCGGCGCACACTCTCTCTTTTGCTGCTACAACGGATCCTTTCCACATCGACGCTGCTCTTAACGTCACGCCTGTAAGCCGCGCGCTCACCCAGCGCTCGCCTTCCCTGTCTTGCTCCTCTCCCCAGTCGGACGCTGCATTAGCGAGGGGGTGCTGATCACCacgaggagaggaggaaaaataaaaagaactggaaaaaagaaacaagtcgaagagaggaaggagaaacTGCGCACCACCCCTCCTCCCTCTAACCCCCCTCGATCAACCCAGCTACATCACCCCCACTCCTCCCAGCACCCCCTTCCATCCCCCACCCCACTCCCCCTCTGAAGAAATTGACGGATTATTGGGAAGTGCAAGGGAGGcaggctgcagctgctgctgtgtgtgctcACTACTGCTGCTGTGTGCTTCGCAGGGATGGTGTGTGCGTTTGCAATCGCTGCTGTCGCCACCACGGCTGCCGAGGCTGGAGTGTGTGGCTAGTTAAGAAGAGGAAAAAGCTAATGAAGGCAGCGCGTGTCGCCTAGTCTTTTCAACCCCctggagagaggaaaaaaaaggaaataaaaaggaaaatcaaGTGGACACGACGCCACATTGTGAGGGGGAGCAAGGGGAAGAGAGCGAGAAGGgctgtcagactgaccagccgACCAACTGATTGACCACTAAAAAGTGAACAGAGGAATACAGAGAGGAGggggtctgttttttttcccccccggcTTGTCAACCTTTCTTCCTAACCATCGCTAACAAAAGGCAAAGAACattggagaggactgtggaatTTTCATTCAACCTTCTTCAAGCCCACCCCCAACTACCTCCCTCTTTTTGCCCTTTCTGCCTTGGCTTTTGGTGCACAAACAAattgtgcgtgtttgtgtggtCGTCTGTGCTATGGAGACCTGGGTAAGGTGTCTAGCAGGGGGATCAACTGTCGGATTCCAAGGACAAGCAAGAGAAGAGGAGCCGACAGCAAGAAGCGAGCAAGGGCGCACTGCTGCTTTGGGAGCCTGACTGGATTCCTATCTGcaatcttctttttttctaataaaCAAGGAAAGGGAGGGGAAAAACACTCACATAAGGGCCTTCGAACCTTTCTCTTTGGATGTGTGGATTTACAAAAAGGACTCATCTTGGTTTAGTTCTTTGGCATTGATACACGTTTTGACAGAGCAAATATAAAAAGGCTTTCTTTGCTGCTCTTGGGATATACATCTGATGTGAATACTACAGCTCTTTCTGATTGCAAACAGGAGGGAAGCTATATATCTCAGTTCAAGGACCTGTAATAATAACTTGAGAAAAGCCAGCCCTCTCTACCATCCCTTCTCCTTCTGCCCCTGAGCTCAGTTCATGGGAATAAAAGCATTGCTTAATTGAGGATAGGTCAAGTCCTCTTGCCCCTTAGCAAGCACCCAAAACCCACACTTTCCCCTTGTCCTCTTCAGTTTCCTTGACTTATTTGCTCTGGTCCCCTTAACACTACTACCAGCCAACCAGCTACTTTCCCTGATCCCCAAAGCCCccaaacacccccaccctccccctccccccagaTGATGCTGAATTATGAATGTGCCACATCATGAGTCTCCTGGGGCGGGTAGCTGTGCATCGTGCCAGGAAAGCCGCCCTGCTCTGTGTAGTCTTCCTGATGGCGCGAGCGTGGAGCAGCGCCTCCCTGGCCTTGGCAGGGGCGGCAGTGTCTCAGGGACCCCAGGGCTGTCCACCGCAGTGTTCCTGCAGTAATCAGCAGGGGAAGGTGGTGTGCACCCGACGTGGCCTCACCCGTGTGCCCCCCGGCATTCCAACCAACACGCGACACCTCAATCTAATGGAAAACGCCATCGAGGCGGTGCAGGCTGACTCCTTCCGCCACCTGCACCACCTTGAGGTGCTCCAGCTTGGGCGAAATGCCATACGGCAGATTGAGGTGGGCGCGTTTAATGGACTAACCAGCCTCAACACACTGGAGCTGTTTGACAACCGGTTGACGGTGGTGCCCAGTGGGGCCTTTGAGTACCTGTCTAAACTACGAGAACTGTGGCTGAGGAACAACCCCATTGAAAGTATACCCTCCTACGCCTTCAACCGGGTGCCCTCCCTCATGCGATTGGACCTGGGAGAATTACGGAAACTGGAGTACATCTCAGAGGGAGCTTTTGAGGGCCTACAAAACCTCAAGTACCTCAACCTGGGCATGTGCAACATAAGGGGTGAAATGCCAAACCTGAGTCCCCTCAAGGGCCTGGAAGAGCTGGAGATCTCTGAAAATCACTTCCCAGAGATAAAGCCAGGCTCCTTCAAAGGCCTGCGCTCACTGAAAAAGCTCTGGGTGATGAACTCCCAAATCTCAGTGATAGAGCGCAATGGTTTTGACGACCTAACTTCATTGGTGGAGCTTAATCTTGCCCATAATAATCTGAGCGGTGTGCCACATGATCTATTTTCCCCGCTCAGGTACCTGGTGGAGCTCCATCTCCACCATAACCCTTGGAACTGTGGCTGTGAGGCTGTATGGTTAGCACGCTGGCTAAGGGAGTACATCCCTACTAACTCAACTTGCTGTGGACGCTGTCACTCACCTGCCAGCATGAGAGGTCGACAGCTGGTTGAGGTGGACCGAGGTGAGGGCGCTGCAGTCCAGTGTTCTGCACCATTCATTGCTGATGCACCAAGGGACTTAAACATCTCAGCAGGGCGAGTGGCTGAGCTTCGTTGCCGCACAGCCCCAATGTCTTCAGTACGCTGGCTCCTACCCAATGGGACTATCCTGACACATGCCTCTGGTCACCCGAGAATATCAGTCCTCAATGATGGTACCCTTAATTTCTCAAATGTCCTGGCAGTAGACACAGGCACTTATACCTGCATGGTGTCCAATGCAGCTGGGAACTCCAATGCCTCAGCCTACCTTAATGTGAGTGCAGCTGAGCTTAATACATCCAATTTGAGTTACTTCACTACAGTGACTGTGGAGGTCTTGGGGCCAACCACTGAGATGCCCAAACCTAAAACTACCACCACcacagctgctgcagcaggGGCTGGGGTAGCTGGAGGAGGGGTAGGCCTAGGGACAACAACTACAACTGCCTCTCCTTCAGTCTTTCAGCCAGTCTTCATCTCCACACCAACTGTGCTGCTGCAAAGCACTGACAGCCCATCAGGAGCAGCTAAGACATCTGTGGTGCCAGTTGTCACTAGCAAGCCAGGCAAGTCTGGCCCTAGCCTGGATGAAGTGATGAAGACCACTAAGATCATAATAGGTTGCTTTGTAGCAGTGACACTGCTGGCTGCTGTCATGCTCATCGCCTTCTACAAACTGAGAAAGCGCCACCAGCAAAGGAGCACAGTGGCAGCTGCCCGCACTGTGGAGATTATCCAGGTGGATGAGGAGGACCTTCCTCCACCAGCGTCTGCAGCTCAAGAGACGGCTCTCTCATTGCCTGAAATCCGGGACCATAACAGCATACACAAACTGGACTTTATCAGCCACAAGACTGACTATAGCTTTCACAAACCCAAGGCCGAATACAAACCCCAGCCTGATTTTACCCTTCACAAGCCGAAGGCTGAGTATACCACATACAAGCCAAATATGGACTTCAGTAGCCACAAATTCATCCCAGATTACAGCACTCACAAATCTACACCAGATTTTAGCCTTCATAGACCAAAGCCTGACTACAGCCAATTTAGGCAGGACTACAGCACTCACAAACCTAAAGCAGAATACAGCCCATTCAAACCAGACTTTGGCACTCACCCAAAAACTAAAACAGACTACAGCCCGTTCAAACCAGATTATGGCACTCATCCTAGGCAGAAAACTGACCTCAGCCCATTCAAACGAGATTACAGCACCCAACCAAAACCTAAACATGACTACAGCCCATTAAGATCGGACTACAACACACAGCATAAACCTAAGGCTGAATACAGTCCATTCAAGCCAGACTTTGGCACTCACCCAAGACCTAAACCTGATTACATCCCATTTAAGCCTGACTATAGCACTCAGCCTAAACCCAAAACAGACTACAGTGCCCAGAGATCTAAAACTGACAGTACCTACAAACCCAAGGACCCTTACTCTTCCCATAAGACTGCAACCGATTACAGCGCCTTTAACACCGACTTCAGCCCCCAGAAAGCGGATTACAGCGCCTTCAAGTCTGACTTTAGCCCACACACTCAGAGACCTAAACTTGATTATAGTCCACACAAAATGGAATACAGCCCCCAAAAAGTGGACTACAGCACTCTAAAGCCCAAATATAACACCTACAAACCAACTGGCCATGGGGCTAAATGGACAGAAAACAATGTTGGGAACTCTTTGCCTCGAACCATGCCCAGCGCCATTACAGCAATGGCTGAGCCCTTCGTCATAAAAACTCACACCAAGGAGAAGGTGCAGGAGACTCAGATTTAAAAAGCCCCCCCTCAAAAGGCTCCCACTCCTTTCCCTAGGTTCCTAGCTCCGATCCACCACTGTCCCTTGCCCCCCCTTCGTCATTTCCTCATAAAATCATGCAATAGAATGCACAACAAAAAAAGGACAGGAACTACTTTTTTGTACAGAGTGCAAACTTAAAAAGACTGATGATTTCTTGTTGTACAtgcttataaatatatatatatatatggacaaATTGAAACTACCATGGGCTGGTGATAGAGAAACatatattaaaaagaaattgaaacTATTTTCTAACTTGTAACTTCTATTTAAAACAATGAGTTGTTTAAGATGCTGTCTTGACTTTGACAAATGAGGGTAGTCTTGTTTTAAAAGGGGGCATTCTGTGTGATTTTTACACCATGCTACAGAGAATGCAgtgataagaaaaaaatatttatactgAGAAGactttctttaacaaaaaccgAAAAAAGGTCACTGTCGATCTTTACAGGTTTATCTTGTAAAAGCACCAAGAATTTGTACTGTGCCAAATGttataaatgcaataaaaaggatttttggaagaaaaaaaggaagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308216 lncRNA upstream 174981 11186939 ~ 11187782 (+) True G227221
TU308210 lncRNA upstream 249858 11102836 ~ 11112905 (+) True G227216
TU308211 lncRNA upstream 249858 11102836 ~ 11112905 (+) False G227216
XR_005638092.1 lncRNA upstream 270089 11092190 ~ 11092674 (+) True LOC120553063
TU308212 lncRNA upstream 308568 11043412 ~ 11054195 (+) True G227217
TU308248 lncRNA downstream 92158 11460113 ~ 11460500 (+) True G227251
TU308264 lncRNA downstream 256280 11624235 ~ 11627943 (+) True G227267
TU308377 lncRNA downstream 622145 11990100 ~ 11992952 (+) True G227338
TU308405 lncRNA downstream 875579 12243534 ~ 12243755 (+) True G227363
TU308581 lncRNA downstream 1478859 12846814 ~ 12910140 (+) False plxna4
XM_039791047.1 mRNA upstream 339005 11019226 ~ 11023758 (+) True LOC120553009
XM_039791060.1 mRNA upstream 376562 10951263 ~ 10986201 (+) False impdh1b
XM_039791007.1 mRNA downstream 85505 11453460 ~ 11456592 (+) True pax4
XM_039792456.1 mRNA downstream 444072 11812027 ~ 11822653 (+) True LOC120553760
XM_039792457.1 mRNA downstream 447158 11815113 ~ 11822653 (+) True LOC120553761
XM_039791458.1 mRNA downstream 458354 11826309 ~ 11836976 (+) True LOC120553244
XM_039791459.1 mRNA downstream 458356 11826311 ~ 11836525 (+) False LOC120553244
TU308205 other upstream 249858 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 249858 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 376562 10948285 ~ 10986201 (+) False impdh1b
TU308097 other upstream 625260 10732069 ~ 10737503 (+) True G227141
TU308063 other upstream 663045 10697254 ~ 10699718 (+) True G227121
TU308276 other downstream 321214 11689169 ~ 11757317 (+) True G227278
TU308397 other downstream 752917 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 1637384 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 2107190 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 2306869 13674824 ~ 13685881 (+) False LOC120553473

Expression Profile