RNA id: XM_039791245.1


Basic Information

Item Value
RNA id XM_039791245.1
length 3808
RNA type mRNA
GC content 0.50
exon number 24
gene id snd1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11269994 ~ 11448442 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGACGTGTGTATGCATGGCAAAGTGTGTTTCCGGTATAACGTGTGTGTTGATCGGCGTTCAGCCTTTTTCTCTTGGCTTTCAGTAGAACAGTCACTGACTTCAGAGTCCCAGCTCCCTTGCCTGGTCACCCCTTAACGGCGTTATATTTCAAACCGGTGGACATGGCATCTATTTCGGCACCAGCTCAGACAGGCCCTTCTCCGGCTGCTTCTCTGCAAAGAGGAATTGTGAAAATGGTCTTGTCAGGCTGTGCCATCATTGTTCGGGGCCAGCCTCGGGGTGGCCCACCCCCGGAGCGTCAGATCAATCTCAGTAATATCCGAGCTGGGGCCATGGCCCGTCGAGCCGCTCAGGGCCAACCCGACACCAAGGACACCCCTGATGAGCCGTGGGCCTTTCAAGCCAGAGAGTTCCTGCGGAAGAAGCTAATCGGCAAAGAAGTGTGCTTCACTGTGGAAATCAAGACCGCTTTGGGCAGGGAGTACGGCATGGTCTACCTGGGGAGAGACACAACAGGTGAGAACATTGCTGATTCTTTGGTGAACGAGGGCCTTGCCACAGTCCGCAGGGAAGGAATCCGGGGCAACAATCCAGACCAGGCCAGACTCTGTGAATTGGAGGACCAGGCTAAGGCTTCCAAGAAGGGCCTGTGGAGTGAAGGTGGCGGTACACACACCATCCGCGACGTCAAGTACATCATAGAAAATCCCCGCAACTTCATTGACTCCTTGCACCAGAGACCTATCAACGCCATTATCGAGCATGTGCGTGACGGCAGTGTTGTTCGTGCCTTGCTGCTCCCTGACTATTACCTGGTCACTGTCATGCTGTCTGGAGTGAAGTGTCCCACGTTCAAGCGGGAAGCGGATGGTACAGAGTCACCAGAGCCATTCGCAGCAGAGGCCAAATTCTTCACTGAATCCCGCCTTCTGCAGAGAGACGTTCAGATTATCCTGGAGAGCTGTCCCAACCAGATCATACTGGGCACCATCCTTCACCCGAATGGTAACATCACAGAACTCCTGCTGAAGGAAGGCTTCGCCCGCTGCGTAGACTGGTCCATGGCTGTCTACACCCAGGGAGCCGAGAAACTCCGAGCTGCTGAACGATCTGCTAAAGAGCGCAAGGTCCGCATCTGGAAGGACTATGTGGCACCCACAGCCAACTTGGACCAGAAGGACAGACAATTTGTAGCCAAGGTGATGCAGGTGGTTAACGCTGATGCCATGGTGGTGAAGCTCAACTCTGGAGAACTCAAGACCATCCACCTGTCCAGCATTCGACCCCCCAGAATTGAGGGAGAGGAGAAGAACAAGGACAAAGACAAACGTTTCCGTCCGCTCTACGACATTCCCTACATGTTCGAGGCCCGTGAGTTCCTGAGGAAGAAGCTCATCGGTAAAAAGGTCAATGTGACAGTTGACTACATAAGAGCAGCTACCGGTCCAGGAGAAGGCACCCCTGCGTTCTCAGAACGCACCTGTGCTACAGTCACAATTGGGGGCATTAACATAGCGGAGGCTCTGGTCAGTAAAGGCCTGGCCACAATCATCAGATACAGACAGGACGACGACCAGCGCTCCTCCCACTACGACGAGCTGCTTGCCGCAGAGGCTCGGGCCATCAAGAACGGGAAAGGGCTACACAGCAAGAAGGAGGTTCCCATCCACAGAGTGGCTGACATCTCTGGGGAGACACAGAAAGCCAAGCAGTTCTTGCCCTTCCTGCAGAGGGCTGGCCGGTCAGAAGCTGTGGTAGAATACGTCTTCAGCGGCTCCCGCCTCAAGCTGTACATGCCGAAAGAAACCTGCCTCATCACATTCCTCCTCGCCGGTATTGAATGTCCACGCAGCTCCAGAAATATGCCTGGAGGGATGCAGGTGGCGGAACCGTTCAGTGACGAGGCCATGCTGTTCACCAAAGAGCTGGTGCTGCAAAGGGAGGTGGAAGTTGAAGTGGAGAGCATGGACAAAGCAGGAAACTTCATTGGATGGCTGCACATTGAGGGTGTGAATCTGTCAGTCGCGCTGGTAGAAAATGCTCTGTCCAAGGTCCACTTTACAGCAGAGCGCAGCGCTTACTACAAAACCTTGGTCTCAGCCGAGGAGTCATGCagacagaggaaagagaagATCTGGGCTAATTATGAGGAGAAACCAGTCGAGGAGGTTGTGCATGTAACGGAAGAGAAGGAACGAGTGGCCAACTACAGAGCAGTATATGTCACCGAAATCTGCGACACCCTGCACTTCTACACCCAGGACGTAGAGACAGGGGGCCAGTTGGAGAGTCTGATGGAGACCATGAGAGCAGAGATCGCCGCCCAGCCGCCAGTGGAAGGATCCTACGCTCCACGCCGAGGGGACATCTGCATTGCCAAGTTTGCTGATGGCGAATGGTACAGAGCCAAAGTGGAGAAAGTTGAGTCACCGGCAAAAGTTCACGTCTTCTACATCGACTATGGCAATAGAGAAGTTGTGTCCTCCACCCGTCTGGCTGCCATGCCCCCTGCCTTCGGCACCAGGATCCTGCCAGCACAGGCCACCGAGCATGCCTTCGCCTTCATCCAGGTCCCACAGGACGAGGATGCCCGTGCAGACGTGGTGGACTGCATTGTGCGGGACATCCAGAACAGCCAGTGCCTGATGAACGTGGAGTACTCGGGTGTCACCTGCCCACATGTCACAATACAGTTTGGGGACACCAAGGACGATGTGGGTCTCGGCTTGGTCAAGGAAGGCTTGGTCATGGTGGACGTCCGCAAGGAGAAGCACCTGCAGAAGATAGTGACAGAGTACCTGAACAGTCAAGAATCTGCCAAGAGTGCCAGGCTCAACATTTGGCGCTACGGAGACTTCCGTGCGGACGATGCCGATGAGTTTGGTTACAGACGTTGAAAAAAATCACCATCCAATCAACACAATTCCAAAGACCACCATGGACGGCAAGTGACACATTGGACAGAAGACGGATGACGAAAAACTAAACGACAAGCATTGACtcaatctcctttttttttttatttgacatttcaTCCCTCCAGTGCTGACTTCTCTTCtgcttatatatatttttttctccagcTAGCCCCTGTAGCTCCAAATAGAGCATGCTAGAAatgctaaaagaaaaattaatcATGCAAGAATCACTTTCTATTCATCCTTTATTTTCCAAATGGCCCACTGCCAGCTCAAGCAGCCTGCACTATTGCCAATCTGTGTTATTTGCCATGTTACCTTTTCAGCAGACTTTCTGTGTGAATGATAATTATATATACTTACGTACGTGTTTCAGCCAATCCCTTTCTTAGCTCTCTGATGCTCTATGCCCAATTCCTGCTTTCCTCTGTACAGGAAGTGACTGGGTGTTCGGGGGAGATGCTTGATTTTTGCAAACAAATGTTTCCCTAATGAATTTCATGTAAATGTGAGGATATGTTGAAAAGtgtaaattgatttattttagagaaatactgtaggtggagccacacagacaaaaaaggatgagtttatttttgtctttaatgTATATCTGTGTGATGACATTTGCGGATGTTTTTGTGGGGAGTGTTTTGTCGTTTATTAACCATGTCACACTTTTATGACCAGTAAAAATGGATGCCATCATGTGGCATTTTATCATCTCTCTATTTCCTTCTGTAAAGTTTACATACTACTAATGGTTATGATCCTGTTCTGAGCAGTctcttctctttgtctctgtatgCCACAGCAGAAACGGTGTTTGAATTTGTTTCCACATAATGGACCTTTGCATTCTATTAAAAATCTGCTGAATAaag

Function

GO:

id name namespace
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15979 SND1; staphylococcal nuclease domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308245 lncRNA downstream 2205 11267586 ~ 11267789 (-) True G227248
TU308217 lncRNA downstream 17139 11252624 ~ 11252855 (-) True G227222
TU308213 lncRNA downstream 178377 11091390 ~ 11091617 (-) True G227218
TU308202 lncRNA downstream 238989 11029844 ~ 11031005 (-) True G227215
TU308195 lncRNA downstream 246114 11023408 ~ 11023880 (-) True G227211
TU308286 lncRNA upstream 10355 11458797 ~ 11460023 (-) False hgfa
TU308317 lncRNA upstream 50402 11498844 ~ 11500914 (-) True G227295
TU308338 lncRNA upstream 364041 11812483 ~ 11822704 (-) True G227314
TU308429 lncRNA upstream 382587 11831029 ~ 11831677 (-) True G227384
XR_005638138.1 lncRNA upstream 447201 11895643 ~ 11906818 (-) True LOC120553249
XM_039791052.1 mRNA downstream 259889 10987010 ~ 11010105 (-) False LOC120553011
XM_039791050.1 mRNA downstream 259889 10987010 ~ 11010105 (-) True LOC120553011
XM_039791051.1 mRNA downstream 259893 10987010 ~ 11010101 (-) False LOC120553011
XM_039791981.1 mRNA downstream 337351 10916702 ~ 10932643 (-) True si:dkey-159a18.1
XM_039791987.1 mRNA downstream 353421 10910337 ~ 10916573 (-) False fam3c
XM_039792505.1 mRNA upstream 10139 11458581 ~ 11482578 (-) False hgfa
XM_039792504.1 mRNA upstream 10139 11458581 ~ 11482578 (-) True hgfa
XM_039791758.1 mRNA upstream 55176 11503618 ~ 11604688 (-) False cacna2d1a
XM_039791755.1 mRNA upstream 55176 11503618 ~ 11604688 (-) False cacna2d1a
XM_039791757.1 mRNA upstream 55176 11503618 ~ 11604688 (-) False cacna2d1a
TU308180 other downstream 288735 10980198 ~ 10981259 (-) True G227197
TU308019 other downstream 747032 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 1073561 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 1074124 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 2515162 8572959 ~ 8754832 (-) False ppfia2
XR_005638189.1 other upstream 175567 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 390502 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 836484 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 2071823 13520265 ~ 13529778 (-) False LOC120553470
TU308919 other upstream 2203220 13651662 ~ 13659272 (-) True LOC120553486

Expression Profile