RNA id: XM_039791261.1


Basic Information

Item Value
RNA id XM_039791261.1
length 2892
RNA type mRNA
GC content 0.50
exon number 17
gene id dnai7
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19346318 ~ 19353491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAAAGGGTTGGCCATGTCAGAAACCAGGTGGCCTTTCACACTCCTGAAACGAAAAGAATATCAAAGGGAAACTGTCTGAGATGACATTGACAGTAGAGACAGAAGCATTTGGTGGGCGTGACTGAGTGAAAGAAGACAGAAGCCAGCAACCAACAACATAATTAGCCAGAGTAGTTGCGACGTCTAATCACGCCGCTCTGCTCTGAAATAAGCTAGCTAACGTAACCGTTAAACcgaacagctagctagcttgttAGTTAGCACGTAATACATAACTTCACGTTAGCCTAACGTACTGCATTTATCACACTCTACGACCAACCATTTAAAACGGTGCTGTCATATTTACTCGTGTTCTTCTGTTGGGTGGAGTTACTCAAACGGTACAACAATGAAGACACGAatccttttctttgtcttaccTGCGACAACACAATGTATGGACAATAAGAGTACTTCTTCGTCCACGCACTGAACATAGCTGGACACAGCCGTACGTCGTTTCGTTATgtcgcaaattaaaacagatAACCACGCATGCGCATTTGTTTCTATGGTTACCTGGACGCTGTAGAGCTTTTTTGTTTCAGCATGCCACCCAAGAAAGGAAAGTCATCAAAGGGAGGTAAGCTGAACAAGGCCCAGAAGGCGAAGCAGcaacaagaggaggaggaaagaaggCTGCAAGAGGAAGAGGAAGCACGGCTGCATGCggaaaaagaagagagggaaagattggaaagagagagaaaggagaaggaGCAAGAAAGGCTTGAGTTAAAGGACCAAGAGCGCCGAGAAGATGAGTTGAACGAACTCCGCCATCTACTGGAGGAGAATCATACTGCGGTAACCACATGGAAAACTGATGCTGTGGAGAAAGCCAAGTGGGAGAGATACATGCATTGTGATGGCACCCCAGACCCAGCAGTACAGCAGGATCTTAACACACATATCAGCTTATGGAGAGATGACCCAGAGGTCAACATCACACTCGTGCTCAAACAATGTCACCTCGCTCTACAGCTGATGGAGGAGCTGGAGGCTCTGCTCAGAGATGTTACAGATCCACAAGAGTGCCACAAGTACCAGGATGGCCTCATAAACTTGCAGGAGCTAATCCACTCTAAACACCTCCTCACCACTGAGGAGATCCTCAAGAGTGCCAGTATGAACATCGACACTGAGACAGGCAACATGCAGACTGTGGTCAAAGATGTCAACATTACGCTGTGTCTCTGGGCCAACCTCAAGAAGAATCCAAGGTTTAGAGATTTAAACTTTGGGGAGGCTGGCCTGGGCTTTGAGCTTCCCAAACAGCTAGCTGTGAGCCATATCGCTGTACGGTTGCTCCACACACATTATGACCACCTGTCCTTGCTGGCCAGGATGGCTCACCCGAGAATGCACACACCCAGCCTCAGGTCTCTTGCATGCGGGGAGGAGGTTCCAGCAGACATAGATGTACCTGAGCAGGAGGAGACAAAAAGAACGGGAGAGGCGAAGGAAGACATTGAGACCCAGCAGCAGCGAGTGGACAAGGAGGTACAGTCCATCCAAGGGTTTGACGGGAGCAAGAGTGCAGCCAGCCAAGAGTCCAGTAGAAACAGCGCCCAGCCTGCAGAAGGCAGAGTGAgccagatacagacacagatgGAGGCACTCAGCAGTAAGATGCCCAGCCCGACACTTCCCGACACTCCTAAAAGACAGCCCCATCACACAGGATctGAGGGGGACTTGACTGAGACTCCCATAGTGCAGCTGACAATGATGGACCGCAGTGAGTGTGTCCAGGCAGTGGACTTAATGCAGTACACACCTCTGGGTGGGGTCTTCTACTGTGACGTGTTTCACCTCCCGCCACAAACCCACCAGGTCAATGGCTGGGAAATTAGACAGCTGTTGGACGAAGGGCTTCAGGTGTTCCCGTACCCTTTGGAAAAGTCTAACTTAGATGACACCGAAGCTCTCACCTGCCCTCCTGTCGGTGTGTCTGTGACACTGCCCGACTCGGTCGTCTTCCTGGAAACTCCCCAAGTGGCTCGCTGGGATGCTGCAGtgaaGCAGTGGAGGATGGACAGTATCACTGACTTGTCTTATGAGGAAAAAGAGGCCAAAATCTCCTTCAAGATGGACTCCTTCCAGCCGTTTGTGCTGATGCAGGAAACGTATGCCAACCTTCCCTTCCTGAGTTGGGAGCTCAGGCCATTGGGCCAAGACGCAGCTCTTTTCACCGTCAACGGGGCACTCATTGACCTCAGTATCACGATCCAGGGTAATCAGTGTATGTTGCAGTTGGGGCAAGAGAGAGGTCTCTCTCACCTCATAGGGAAGTGGATGAGTGGCCCCATCCTGCAGAGAGCCATGCTCAATGCGGGGATCAACATCTTTGTCAACGAGTACACCGACAAATACATCATCACCTGCGGCAAGGACCCACTTACAGAACATGCTGCCTACGAACAGATGGCCCTCTTCGCCTCTGCCTGCGCTTTCTCGTGGAGCAAGTGGAATGCCAAATGTGGAGCTGAGCATTTAGTCATGCAGGCGTGTGAGCACCACGACCCTGTCCCGGTGCCTAAGGATTCGTGGAGTCTCTACCTGCTGGGCGCTCAGAGGAGTCAGAAGCTGGAAATCACAGAGAAGAGTGCGGAATTCTCTCCAGATTATTATCCCGGAAGTGAGTTTCACTCCACCTTCATCCACATGCTCCAGGACAACATGAGCACTGACGGCATAGCCAGGACCAGAGAATCCAATAATCTGTTTGTTGATACAGTACAGAGCCTTCTCTGTGCCACCAGACCACTGATGTATTCATAACCGGTGTAAAATTAACTTTAAGTTTTTCTAAACCAACAaattaaagacattttaaacacCTGAA

Function

GO: NA

KEGG:

id description
K17580 CASC1; cancer susceptibility candidate protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310457 lncRNA downstream 10290 19332641 ~ 19336028 (-) True G228826
TU310454 lncRNA downstream 17975 19326621 ~ 19328343 (-) True G228824
TU310342 lncRNA downstream 75982 19162017 ~ 19270336 (-) False sox5
TU310370 lncRNA downstream 324076 19014655 ~ 19022242 (-) True G228759
TU310334 lncRNA downstream 370498 18893640 ~ 18975820 (-) True G228731
TU310474 lncRNA upstream 9682 19363172 ~ 19363381 (-) True G228834
TU310475 lncRNA upstream 10666 19364156 ~ 19364416 (-) True G228835
TU310476 lncRNA upstream 11634 19365124 ~ 19365528 (-) True G228836
TU310478 lncRNA upstream 20714 19374204 ~ 19375361 (-) True G228838
TU310479 lncRNA upstream 21969 19375459 ~ 19375795 (-) True G228839
XM_039791267.1 mRNA downstream 36634 19297922 ~ 19309684 (-) True bcat1
XM_039791268.1 mRNA downstream 36725 19297922 ~ 19309593 (-) False bcat1
XM_039791407.1 mRNA downstream 76079 19028609 ~ 19270239 (-) False sox5
XM_039791408.1 mRNA downstream 76079 19028609 ~ 19270239 (-) False sox5
XM_039791404.1 mRNA downstream 76079 19028609 ~ 19270239 (-) False sox5
XM_039792053.1 mRNA upstream 2382 19355872 ~ 19362110 (-) True slc5a8
XM_039791046.1 mRNA upstream 43366 19396856 ~ 19407358 (-) True arl1
XM_039791045.1 mRNA upstream 64751 19418241 ~ 19428429 (-) False LOC120553005
XM_039791044.1 mRNA upstream 64751 19418241 ~ 19428429 (-) True LOC120553005
XM_039791749.1 mRNA upstream 141929 19495419 ~ 19504306 (-) False rpap3
XR_005638136.1 other downstream 924911 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 1245323 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1418613 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 2044120 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2522886 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 85027 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 89742 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 93531 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 94574 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 98498 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile