RNA id: XM_039791268.1


Basic Information

Item Value
RNA id XM_039791268.1
length 1761
RNA type mRNA
GC content 0.48
exon number 11
gene id bcat1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19297922 ~ 19309684 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACAATATCGACTCCTATAATTACTGTAGCCTGCGTGTTCGCGGATGCTGGGGATACATATTGGTGACGCAGgGAAGCAGCTACATTTCTACCATCTCAATGgctgacaaaataacaccaagcTTTAAGGCAGCTGACCTGGTTATCGAGCTGTCCTCCACTCTAAAGCCCAAACCGAACGTGATTCCCTTCGGGACCGTCTTCACTGACCACATGCTGACCGTAGAGTGGAATGCGAGTGAGGGCTGGCAGGCTCCGCTCATCAAGCCCTTTGGGAACCTGTCTCTCCACCCGGCCACTTCGTCACTACATTACGCCATACAGCTGTATGAAGGGTTGAAGGCATACCGTGGGGATGACAACCAACTGCGCTTCTTCAGACCCATGCTCAACTTGAAACGCATGTCCAACACCGCTAAGAGAGCGTGTTTACCTGCCTTTGATGAGTCAGAGTTTCTGGAGTGTATCAAGCGACTGGTAGAGACTGACCAGGACTGGGTTCCTCACTCAGACTCAGGCAGTCTCTACATCAGACCAACATTTATTGCCACTGAGCCCGCTCTGGGTCTAAGGAAGCCTGGCAGTGCCTTGCTCTATGTGATCTTGTGTCAAGTGGGCTCTTACTTCAAGAACAAGGCAGGGCCCCTGTCCATGTGGGCCGACCCGAAGTACACACGGGCCTGGAAAGGAGGAACTGGAGATTGCAAGATGGGAGGGAACTATGGCTGTTCCTTGTTCCCCCAGTATGAAGCAGAGGAGCACGGGTGTCAGCAGGCGCTGTGGCTGTACGGAGAGGACCACCAGATCACTGAAGCAGGCACTATGAACCTCTTCCTGCACTGGATCAATGAGGATGGAGAGGAGGAACTTGCAACTCCACCTTTGGACGGCCTCATACTCCCAGGTGTGACCCGACTGAGTGTCCTGGAACTGACCAGGAAATggGGGGAGTTTAAGGTGACAGAGCGCTACCTGACCATGAGCCAGCTGTGCTCGGCTCTGAAGCAGCAGCGGGTCAAAGGGATGTTTGGCTCCGGTACTGCCTCCATGATCTGTCCCATCGGTCACATTGTTTACCAGGGAGAGaAATTGCACATCCCCTGCCAGGATAACAACTCACTGTTGACTCAGCGGTTGACAAAGGAACTCACGGATATACAGTATGGACGCACGCCCAGCGACTGGACTATCCTGGTGTAGCAGCGACGAAGACGCCTcgaacacacacagtgtgtgtgtacaataaGGAAGTGCTCTTACGCAATAACCAAATACTACTATATaacaagaaaaacaatgtataacaaTGTACGTGCAATATTTGTGTTCTGACTTGTTTAATACTGTATGCCGGCTCTGCGGCTAGCGTGTCACAGCGCTTTATCTCCTTTTTAAGCTTAAATTAATGACAAACACACAAGTGTCCAGAATAATTAACAAAAGTAGGCTAATGTCTCATGCAATACTGCACAATAACTTACAGTAATCTAGCCACCGTGGCTTACTCTGCTGCTTTCCAACCAAGGATACAGCTGTGGCTGGGATTGAAcataaaaaaaggggaaaacatATATGTGAGATGTTAAAGTTACAGAGAATTTCATATCACTTGGTAAGAGTTGCAAAGCAGCTACAAGAAGACTTTATCTAATTTTCCTAATTAACACATCTTCATATGGGTATGGcatgaaaaacaaaaccatGCAGGGTGAGATATTCCTTATGATTGTCTGTCTTTTACATTGCTAAAAAATTAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310342 lncRNA downstream 27586 19162017 ~ 19270336 (-) False sox5
TU310370 lncRNA downstream 275680 19014655 ~ 19022242 (-) True G228759
TU310334 lncRNA downstream 322102 18893640 ~ 18975820 (-) True G228731
TU310303 lncRNA downstream 413847 18881161 ~ 18884075 (-) True G228713
TU310292 lncRNA downstream 558412 18738396 ~ 18739510 (-) False LOC120553633
TU310454 lncRNA upstream 17028 19326621 ~ 19328343 (-) True G228824
TU310457 lncRNA upstream 23048 19332641 ~ 19336028 (-) True G228826
TU310474 lncRNA upstream 53579 19363172 ~ 19363381 (-) True G228834
TU310475 lncRNA upstream 54563 19364156 ~ 19364416 (-) True G228835
TU310476 lncRNA upstream 55531 19365124 ~ 19365528 (-) True G228836
XM_039791407.1 mRNA downstream 27683 19028609 ~ 19270239 (-) False sox5
XM_039791408.1 mRNA downstream 27683 19028609 ~ 19270239 (-) False sox5
XM_039791404.1 mRNA downstream 27683 19028609 ~ 19270239 (-) False sox5
XM_039791405.1 mRNA downstream 27683 19028609 ~ 19270239 (-) True sox5
XM_039791413.1 mRNA downstream 180965 19028609 ~ 19116957 (-) False sox5
XM_039791261.1 mRNA upstream 36725 19346318 ~ 19353490 (-) True dnai7
XM_039791263.1 mRNA upstream 36789 19346382 ~ 19353491 (-) False dnai7
XM_039791262.1 mRNA upstream 36789 19346382 ~ 19353490 (-) False dnai7
XM_039791266.1 mRNA upstream 36789 19346382 ~ 19353490 (-) False dnai7
XM_039791265.1 mRNA upstream 36789 19346382 ~ 19353489 (-) False dnai7
XR_005638136.1 other downstream 876515 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 1196927 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1370217 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1995724 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2474490 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 128924 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 133639 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 137428 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 138471 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 142395 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile