RNA id: XM_039791277.1


Basic Information

Item Value
RNA id XM_039791277.1
length 1871
RNA type mRNA
GC content 0.55
exon number 6
gene id cbll1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23677168 ~ 23684068 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCATATTTTCCTTCTCTCCTGtgttctttcctttcctctcttcacCTCGCCTTCTctatcccacaatgcattgtGTTCAGTCGTTGGATCATGGACCAAAGCGACAATGATCTTCAAGGAAGTGATGGTTCTGGGATTTTGGGTGGCCCAGATGTTCGCAGACGAATCCCCATCAAACTCATATCTAAGCAACCCATAAGGAGCAAACCTCAGCCCCGCACCCAGAGACCCAGCAGCAGGCCATGTAAAAGTGAGGCTGGAGAAGATGATACCTTTGGCTTCAAGCAAGAGGAGAGGTTTGATTGTGGAGCTAAAGCTGGTGATGTGTTTGCAACTCAGAGGAGATTCCCCCAGGCACTGTTTTGGGACTATAAGTTAAATTTGATTGGAGAAAGAGATGAAGTACCAATTCACTTTTGTGATAAATGTGGTCTTCCTATCCAGCTATATGGACGAATGATCCCCTGCAAACATGTTTTCTGTTATGACTGTGCTTTGCTCCAtgagaagaaaggagaaaagATGTGCCCTGGCCTCACAATGTACAACTGCACAGACCCAGTGCAGCGCATCGAACAAAGCCAGCGGGGTGCCCTGTACATGTGCAGTGTTGTGCCGGGATGCAAGCGCACCTACCTGTCCCAGCGTGACCTGCAGGCCCATGTCAACCACCGCCACATGAGGGCCGCCAAGTCTTCCGCTGGCCGACAGGAGCCTGTGCACCTGCCCCCTGCATCCGAGGTCCCGGACCGTTTCCGCGTGCCTCCACCTCACCTACCCAAGAACCACGTGCATCTCCCAAACCCGCTCCAGCATGGCAGTCATGATCCCTACAGTCAGCCGCCCCCACCTACAGCTCACGAAGCCCCGCCCCCGACCGCTCTTGGTCCCGAGACATTCCGCATCGCCACGGTAACAACCCGTAAGCACAGCAATCTCATCACCGTGCCCATCCAAGATGACTCCTCCTCTCGGGAGCCCCTCTCTGGTGGGCCAGGCCCTGCTCAGccaccccaccaccaccccgGGGACTATCCCGGGCAGCCGCCTGTAGTGTCCCACTCTCACCACATGATGGCCCCGCCGCAGCAGCACTTCGGCCCGCCACCTCCCCCGCCTCCTCCTATCAGCCACCCCATGCAGCATCCTCCCCAGGCCTCTGGTACACCACATATGGTGTACAACCAGGCCCCTCCGCCCCCCATGTCCACAGCTCCACCACCCATCACCCCACCACCAGGGCACATCATGGGCCAGATGCCCCCCTATATGAACCACCCGCCCCCTGGGCCTCCACCACAGCACAGTGGCCCTCCTGTCAACGCCCCCCCACCTCATCATTACAACCCCAACTCCATGCAGCAGTTCCCTGAAGACCAGGGCACCCTCAGTCCCCCGTTCAGCCAGCAAGGAGGGCTCAGTCCTGGGATGTGGCCCGCTCCAAGAGGGCCCCCACCTCCACGAATGCAGGGCCCTCCTCCCCAGGGCCAGATGCCCGGACCACACCACCCAGATCAGGGCCGCTACCGGCCTTACTATCAGTAAACTGCCATCTGAATGAATGGGCGACAGTGTGTCATTCTGTTCCATACCACTTGTCTGAATAATGTGATAGTAGACCTCAGGGTTACAGGGTGTAGGACTTTGATATGACATTGGCCCCGAAGAAAATGTGTATGTGCTGCACATTTTAATTAAGTGTACTGAACTTCCCGCTGAACATACAATAGACTTGGAGAAGAGCAGcaatgtccctttttttttttatagtgtatggtaaatatttctgtatatatgtCAGCTGATTCCACgcatatgtactgtacattaaaaGACGCTAACTATGTCTCAATAAATTTTTAACGGCAGA

Function

GO: NA

KEGG:

id description
K15685 CBLL1; E3 ubiquitin-protein ligase Hakai

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638123.1 lncRNA downstream 35664 23623580 ~ 23641504 (-) True LOC120553168
TU311811 lncRNA downstream 116826 23538248 ~ 23560342 (-) True G229872
TU311805 lncRNA downstream 149629 23527105 ~ 23527539 (-) True G229867
TU311733 lncRNA downstream 263410 23413116 ~ 23413758 (-) True G229802
TU311705 lncRNA downstream 364082 23298709 ~ 23313086 (-) True G229774
XR_005638124.1 lncRNA upstream 6451 23690519 ~ 23711804 (-) False LOC120553170
TU311853 lncRNA upstream 18636 23702704 ~ 23707197 (-) True G229908
TU311856 lncRNA upstream 29388 23713456 ~ 23713677 (-) True G229909
TU311901 lncRNA upstream 174992 23859060 ~ 23859758 (-) False LOC120553046
TU311929 lncRNA upstream 262429 23946497 ~ 23948780 (-) True G229952
XM_039791653.1 mRNA downstream 60092 23594352 ~ 23617076 (-) False slc26a5
XM_039791652.1 mRNA downstream 60093 23594352 ~ 23617075 (-) True slc26a5
XM_039791654.1 mRNA downstream 88408 23562160 ~ 23588760 (-) True dnajc2
XM_039791651.1 mRNA downstream 145361 23529757 ~ 23531807 (-) True phax
XM_039791006.1 mRNA downstream 401625 23229083 ~ 23275543 (-) True cmah
XM_039791559.1 mRNA upstream 34271 23718339 ~ 23809346 (-) True sbf1
XM_039791102.1 mRNA upstream 174151 23858219 ~ 23863974 (-) True LOC120553046
XM_039791068.1 mRNA upstream 184088 23868156 ~ 23885592 (-) True glt8d2
XM_039792024.1 mRNA upstream 382341 24066409 ~ 24109573 (-) True net1
XM_039792025.1 mRNA upstream 382341 24066409 ~ 24109572 (-) False net1
TU311637 other downstream 437595 23104760 ~ 23239573 (-) True G229716
TU311319 other downstream 1866071 21771136 ~ 21811097 (-) False LOC120553090
TU311312 other downstream 1866137 21771088 ~ 21811031 (-) False LOC120553090
XR_005638087.1 other downstream 2531635 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 2718948 20957657 ~ 20958220 (-) True G229199
TU311825 other upstream 7953 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 15629 23699697 ~ 23700198 (-) True G229907
TU311926 other upstream 224488 23908556 ~ 23914692 (-) True G229950
TU311924 other upstream 228033 23912101 ~ 23914692 (-) False G229950
unassigned_transcript_1528 other upstream 892882 24576950 ~ 24577021 (-) True trnap-agg_20

Expression Profile