RNA id: XM_039791278.1


Basic Information

Item Value
RNA id XM_039791278.1
length 4901
RNA type mRNA
GC content 0.49
exon number 24
gene id ppp6r2a
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23686003 ~ 23706968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTCGTAACCATGTCGCCATTTTGATTCGAAAAATATGACTGAGTTTTTCCTGCTTTGCATGCTAAACTTAGCCCAGCGTTTGAATTACTTTGTGCGTGAGTACGAATCATACACTCTAGATCTGTAATAACAGGTATTGTTATTAATGTCAAGTAGCATTCATGCTGGGGAACTGTTTATTTGATAGACTTCAGAGCCACATTTGACTCACGTTAGGTAAGTTGAGCTAGCTAACTGTAGCCTGTGCTGTCGCAGACTGACCCTTCTTCAAAACAAATCACTATTCGCTCGTATGTATCTTAGCTAACATAGCTAATAGTGAACTGGATAGCTGGTGACTTAACGCTAGTAGCTGACTGCTTGACAAAAACTCAACTAAAAATCTTGAACACACACGGGAGGCATAGCAGCGGACTTTCAATCAAAAGGTTATGGTGAGCCTCTCTGCGTCTCATCTCCTAAAGAGGCCTGCGTTTTAAGAGGAGACCCATGCTGATAAATGCCAGGCCTCGCCACACTCTCTGTCGTCGGCACAAACACAAATGCCTGCCTGCCCGTGGGGGAGGTCTGATTAAAGATATCCACCTTTCATCCACTGGGCTGTGTCCCCCGTCCCAGCGGCCACCATGTTCTGGAAGTTCGACCTGCACACCACCTCCCACATCGACCAGCTGCTGGACAGAGAGGACGTGACGCTGAGAGAGCTGATGGAGGAGGATGACGTCCTGCAGGAGTGCAAGGCCCAAAACCGCaggctcctcctcttcctctcccaggACCACTGCATGCAGGAGCTGGTCCGCCTCATCACCACGGAGCCGCCCGCCGACCTGGAGGAGAGGAGCCGCTTTAAGTTTCCCAATATTGCTTGTGAGCTCCTGACATCAGACGTGTCCATTATTAACGATAAGCTGGGTGCAGACGACTCTCTCCTTGAGGTGCTCTATCACTTCCTGGAGCAGGACCCCCCCCTCAACCCGCTACTGGCCAGCTTCTTCAGCAAAACCATCGGCAATCTCATTGCCAGGAAAACCGAAcagGTGATTACCTTTCTAAAGAAAAAGGAAGGCTTCATTGGTCTGGTGCTGAAACACATTGACGCCTCTGCCATGATGGACCTGCTGCTTCGCCTCATCAGTTGTGTGGAGCCTGCCCCCTTGAGGCAGGAGGTCCTCCATTGGCTGAATGAGGAGAAGTTGGTACAAAGACTCACAGAGCTCATCCATACTGGCAAAGATGAGGAGAGACAATCAAATGCATCCCAAACGCTTTGTGACATCATCCGCCTTAGTCGAGACCAGGCCAATCAGATGCAGGAGAATATGGAGGCCGACCCACTATTGGCTGTACTAGAGTCGCAGGAGAGCGTAGCGGGGCTCCTGAAGAACATGTTTGAAGGGGAGAGAAGTGAGGCCTCCATTGTTAACGGAACTCAAGTGCTACTTACCTTACTGGAGACCAGGAGGTCTGGGTTGGAAGGGCTGATGGATCTGTATTCTCAGGGTTATGAAAGGTCTTACACTGTCAGCAGCAGTATTTTAAATGCCATTGAGCCCCATATAAAGGACTTCCAGCAGCTTCTTCTGGATCCCCCCAAGaaaagtgcaatattgACGACCGTTGGCGTTCTAGAGCAGCCGCTGGGGAACGCCCGCCTTCATGTGGCCCGGCTGGTGGCCGCCCTGCTGCAGACCAGTGCCCTCAGTATCTGCCAGGAGCTCTGCAATCTCTCCACCATGGACCTACTACTGGATCTGTTCTTCAAATACTCCTGGAATAACTTTTTGCACTTCCAAGTGGAGCTGTGTGTGGCGGCTATCCTGAACCATCCTTCCTCGGAGGAGCGGCCCAACCCGGCCCTACAGAACCATGATGGGAATCCCGCAGCATCGGACCCTGAGCCGCAGGGGGAGGCGATGGAGACAGGCAGGACCAGTGACCCACAGACCTCCATCCACAATGCCCTTGTAGCGCATCTTTTCCAGAAGTGTCAACTGGTACAGAGGATCCTTGACGCCTGGGAGGAGAATGATAAAATACAGGGTGAGGGCGGCACCAGGAGAGGCAACATGGGTCATCTGACCAGAATCGCCAACATGGTGGTCCAGAACCTGGAGAAAGGACCAGTACAGTCCCAGATCACCGACCTCATCAAAGAGCTGCCAGAAGACTGCAGAGGCCGCTGGGAGAGCTTCGTGGATGAGACCCTGCGAGAGACTAACCGGAGGAACACTGTGGAGCTGGTAAGCACCCACAACATGCACTCGTCCAGTGAAGACGACGACATGGAGAGCCCGTTCCCCAACGACCTGTCTCTCCAGCAGGCCTTCTCTGACTATCAGATCCAACAGATGACTGCCAACTTTGTGGATCAGTTTGGCTTCAATGACGAGGAGTTCAGCGAGCATGATGAAAATATCAATGCCACATTTGACCGAATTGCCGAAATAAACTTCAATCTAGATGCTGATGACAATAGTGCCAATGCGGCTGCGTTTGAGGCCTGCTGTAAAGAGAGGATACGCCAGTTTGACGATgctgaagaggaagaggacatttgggaggagaaggagatgaACTATGCAACACAAGCTAAATCCAGAACAAGGTTTGGGGTCTCCCAAACCTCCGAGAACAGCTCCAGGAGCAGCATGGAGAACGGAGGCCGGGAGCGGGACCACGGTTCTGAATCTGATGAGGACGAGGACTCTGAGCAGAACACATCTGAGCAGAACACAACTGAGCCCAACACGTCAGAAACAGATCCAGGCTGGACAGCAAATTTCAGGGAGTCTGGAGGGACTGCAGCATCCCAAACCCCAGCCCAGTGGGACAGCTCGTCTAGGAGTGGAACACAGACGCAGGGAAGTGGCTGGGCCACCTTCACTGAGTTCCAGCCTTTCTCCGGTAAAGAGACCGATCCCAGGTGCAGCTCTCCGGTGGACTCGGGCAGCGGCGATGCCGATCAACAAGCCAAACAAAACCACGAGAAGAGTGGTGAGTGTTTGCCGCCATCCTCAGAACAGTTactttACGCTGGTGCCTCCTCTGGTGCTTGGCcggtgggagaggggaggaaggcTCCTCTCGTGGCCTCAGACAGCAGCTCCTCCGGGGGATCCGACAGCGAGGAGGACGACAAAAACGCCGGCGCTCCTCCCACCGCAGCCACCGCTGTCGTCGTCTCGGAAACAGCCGGCGCCCCCAGCAACAAGACAGCTGACCTCAAAAGCGAGGAGAGTCCGGTGTCTCTGGAGAAACTCTCTCTGTCCGATCCTCCGGAAGCCTCGGAGCAGCCTGCTGAGACTTCACCTGCAGCCACACAGACCGACAGGAGAGAGGAAACGCCACCGCCCCAGGAAGTGTCTGTCAACGGGCCGGTCTGAGCGCCAGCACACTGCTAAATCCGTCAGTGACTGTCAGCCTCCTCCAGAGTGACCCCCCCAGAAATAACCTCGCTGCAACTTCGGTGTTTTTACTGAATCCCTCGGCCATGTTATTGGACCTGGACACTGCCAATCAACACCAATAATGACGCGGcggaacatgtaaaaaaaaaatgaaaaaaataaaaaaaccatgagaaaaaaacaacaacccatCAACCAAACCAACAGACAGAACGGAGTGTAAGGAATCATCTTCGAAGCCTTTTTTTTCCCAACGTTGCACATAATTACGTGCGGTTTTAATGTAGCAGCGATCTTTGAAAAACGACAGAATCCGAGGGGTAACAtcgtcattatttttttatgtcctGAAAAGATCTCCTCCCACTTTGGTCAAAGCTGTTGGAATCCCATTGATAGGGATTTTTTTTACATCGTCGCCCCTGAATGGATAGCACAGGCTAACTTTTAATGATGCCTCAACAATAAATACgttattttgaaaatattttttttttttttccttcttcttcaaGCTTAAGAAAAAGCACTTATGCAGCCATTTACTGTACATTATAGCACAATGTAAGTGTTCTACCCTCATCTCTGCTGGCTGTCTTATCTGTCCTCTCACCCAGATCGAGGTTTTTATCAGTTGTTTccggatttttttcttttttttttttcttttcctcttctctttggTAGCTGTTGATGAAACATCTCTTGTTGTCGTACATCACCAGGTTTCTGAATGTTCTCAAAGTGCTTCGGGAGGGGTCGGTGGAGGGGCAGGTCGATGAACAGAGCTCCAATAGTATTACTGTCTTTTGCTCATGTGCAATAATGTCAATTAgccatttaatttaaaaatgaaattcaccgtttttccttttttctttaaagaatCAATCTAGCGTGGGATACTCATTTGGTGTAGTTTTGGGGCGCACAAATTTGGATATATTCAActtgatcatttatttttttaaatgtttttatttttttttatttttagtgcaTGTATAACCGGTTCTCTGTTGACCTAGCTAGTGAGCTAAGACCTTCTGATTGTATTGACCTTTAAGTTGTTATTGctatcccccccccctttaaaTCAAACCAAACATTATCTGCCTATATACAAATATTATCtacatttaaaagtaatttttacAAGCAATCTTGAGATTACTATTGTtgtctgttcctttttttttctctctctccaccaaGCACTTATTCACAGGGCGAGAGTGGCATCTGGTAAGAGTGACGctgtatgtctttttttttttttattttatttttttttttaagtttattttatttgtctcTGAGCAGCAGGATTGGAAAGAGGGCAGGTCTGGGTTCTGCAGAGCTCCAggccttttttgttgttgtacttACTTAAATCACTTGACAGCGATCAGGTTCTACGATCATTgttacaaaaacaaagcaacaatTGAAATTAAAATTGTCTGGTCGACCACATTAATACCAAAA

Function

GO: NA

KEGG:

id description
K15500 PPP6R2, SAPS2; serine/threonine-protein phosphatase 6 regulatory subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311778 lncRNA upstream 6706 23667703 ~ 23679308 (+) True G229841
TU311754 lncRNA upstream 100515 23579721 ~ 23585499 (+) False G229821
TU311755 lncRNA upstream 100515 23579721 ~ 23585499 (+) True G229821
TU311602 lncRNA upstream 245474 23436565 ~ 23440540 (+) False kcnc2
XR_005638073.1 lncRNA upstream 428153 23232498 ~ 23257861 (+) True LOC120552982
TU311911 lncRNA downstream 208843 23915811 ~ 23916388 (+) True G229938
TU311915 lncRNA downstream 237090 23944058 ~ 23945640 (+) False LOC120553686
TU311919 lncRNA downstream 240725 23947693 ~ 23948538 (+) True G229945
XR_005638093.1 lncRNA downstream 262979 23969947 ~ 23971613 (+) True LOC120553072
TU311951 lncRNA downstream 287598 23994566 ~ 23994835 (+) True G229974
XM_039791274.1 mRNA upstream 9536 23654475 ~ 23676478 (+) True LOC120553166
XM_039791275.1 mRNA upstream 9536 23656361 ~ 23676478 (+) False LOC120553166
XM_039791272.1 mRNA upstream 34834 23630935 ~ 23651180 (+) True LOC120553165
XM_039791656.1 mRNA upstream 91635 23588975 ~ 23594379 (+) True psmc2
XM_039791655.1 mRNA upstream 123795 23532258 ~ 23562219 (+) True pmpcb
XM_039792269.1 mRNA downstream 126050 23833018 ~ 23844893 (+) False adm2a
XM_039791740.1 mRNA downstream 179779 23886747 ~ 23897898 (+) True ankrd16
XM_039791739.1 mRNA downstream 192273 23899241 ~ 23913813 (+) True gdi2
XM_039792347.1 mRNA downstream 217188 23924156 ~ 23933876 (+) True asb13a.1
XM_039792348.1 mRNA downstream 217188 23924156 ~ 23933876 (+) False asb13a.1
XR_005638156.1 other upstream 245351 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other upstream 247088 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other upstream 247830 23315423 ~ 23438184 (+) False kcnc2
XR_005638197.1 other upstream 942835 22739717 ~ 22743179 (+) True phlda1
TU311231 other upstream 1817717 21867201 ~ 21868297 (+) True G229428
TU311873 other downstream 126063 23833031 ~ 23848624 (+) True adm2a
TU311874 other downstream 126063 23833031 ~ 23848624 (+) False adm2a
TU311875 other downstream 126063 23833031 ~ 23848624 (+) False adm2a
TU311876 other downstream 126063 23833031 ~ 23848624 (+) False adm2a
unassigned_transcript_1527 other downstream 180369 23887337 ~ 23887424 (+) True trnay-gua_62

Expression Profile