RNA id: XM_039791287.1



Basic Information


Item Value
RNA id XM_039791287.1
length 867
RNA type mRNA
GC content 0.52
exon number 6
gene id csrp2
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22514966 ~ 22534115 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGGTGGAGTATGTGGCATTGCAGCGTCAGTGTAGTAAAGTCTGCTGAGGAGCTGGAGAGTTGTCTGGATACACAGTGAACACTTGAGCTGGAGCCGAGTCATTTTAGCATCTAGACCTATACCTGCTTTTTAAGAACCAAGCACAATGCCAAACTGGGGAGGAGGCAACAAGTGTGGAGCATGCCGTGGGACAGTGTACCACGCTgaggaagtgcagtgtgacgGGAAGAGTTTCCACAAATGCTGTTTTCTCTGCAtggTCTGCAGGAAAGGCTTAGACAGCACCACACTGGCTATCCATGACCAGGAGATCTACTGCAAGTCATGCTACGGGAAGAAGTACGGCCCTAAAGGCTACGGCTACGGTCAGGGGGCAGGGACGCTCAACATGGACCGAGGAGAGCGGCTGGGAATCAAACACGAAGAgacacagactcacagaccaACCACCAACCCCAACCCATCCAAATTTGCCCAGAAGTTTGGAGGTTCAGACAAATGTGGCCGGTGTGGAGACTCTGTCTATGCAGCGGAGAAGATCATGGGGGCAGGCAAGCCGTGGCATAAGAACTGCTTCCGCTGTGCAAAATGTGGCAAGAGCCTGGAGTCGACCACGCAGACTGAGAAAGATGGAGAAATCTACTGCAAAGCGTGTTACGCTAAGAACTTTGGGCCCAAAGGTTTCGGTTACGGCCAAGGAGCCGGCGCTCTGGTTCACGCTCAGTGATGGCTCGACTGGATCCATCGCACCTTTTTCTATATTCCTCTGTCCAACATCAACCAGCCCttctcttgtgttttctccctcGTGTGCTTTTCATGCTGAAGTAGGTGCTCTCGATTCAAATAAAAGGACCATTAACGACA

Function


GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU311420 lncRNA upstream 160578 22354115 ~ 22354388 (+) True G229559
TU311303 lncRNA upstream 188709 22325795 ~ 22326257 (+) True G229494
TU311302 lncRNA upstream 194438 22320266 ~ 22320528 (+) True G229493
TU311300 lncRNA upstream 221206 22293497 ~ 22293760 (+) True G229491
TU311294 lncRNA upstream 383570 22129026 ~ 22131396 (+) True G229485
XR_005638125.1 lncRNA downstream 231986 22766101 ~ 22771633 (+) True LOC120553177
TU311500 lncRNA downstream 298835 22832950 ~ 22833161 (+) True G229621
XR_005638089.1 lncRNA downstream 442358 22976473 ~ 22994911 (+) True LOC120553039
TU311539 lncRNA downstream 494724 23028839 ~ 23037327 (+) True G229645
TU311555 lncRNA downstream 570065 23104180 ~ 23186555 (+) True G229659
XM_039791197.1 mRNA upstream 8763 22493378 ~ 22506203 (+) True e2f7
XM_039792519.1 mRNA upstream 586556 21894940 ~ 21928410 (+) True LOC120553804
XM_039792517.1 mRNA upstream 624393 21878278 ~ 21890573 (+) True LOC120553802
XM_039791174.1 mRNA upstream 637696 21870583 ~ 21877270 (+) True LOC120553094
XM_039792120.1 mRNA downstream 40708 22574823 ~ 22675194 (+) False osbpl8
XM_039792119.1 mRNA downstream 40708 22574823 ~ 22675194 (+) False osbpl8
XM_039792125.1 mRNA downstream 40708 22574823 ~ 22675194 (+) False osbpl8
XM_039792122.1 mRNA downstream 40709 22574824 ~ 22675194 (+) False osbpl8
XM_039792121.1 mRNA downstream 40709 22574824 ~ 22675194 (+) False osbpl8
TU311231 other upstream 646669 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 655757 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 664365 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 667946 21837922 ~ 21847020 (+) True G229423
unassigned_transcript_1526 other upstream 918088 21596768 ~ 21596878 (+) True trnal-caa_47
XR_005638197.1 other downstream 205602 22739717 ~ 22743179 (+) True phlda1
XR_005638156.1 other downstream 781308 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 781308 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 781308 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 1298916 23833031 ~ 23848624 (+) True adm2a

Expression Profile


XM_039791287.1 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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XM_039791287.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039791287.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.