RNA id: XM_039791288.1


Basic Information

Item Value
RNA id XM_039791288.1
length 5282
RNA type mRNA
GC content 0.43
exon number 20
gene id ano6
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14348746 ~ 14366431 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTATGATTTTATATTCTCTCAAGTCTCAACTTGAGCAAAACGTTATGTGGCTGAGTAGGCTATATGTTGAGAAATAAAGCAAGAATGCGCGGAGGACGAGGCTGCGCTTTAAAGCCATAGTAATAGGCTCCAGCAGGCTGTCGGTAAAGTAAAGTTTAGTTGTTTTCGGTAATGTGATTCAAACCCCCCCCCCGACAAGGACTATGAGCGATAACGACATCTTCGAGATGGACTCCATGTGTGAGACGGATGAGTTCGAGGGTGAAACTGACGTCGGCATGATAGACGAGGAAGTTGTTTACTCTGAGGAGTTCTTACCAATATATCACAGTTTTGAAGACGGAACAACAGTCGCCAAAGCACATCTGGTAGAGTTTAATAACAAACCAGACTCCTTATTCTTCAATGACGGCGTGAGGAGGATTGACTTCATCCTGGTCTATGAAGATGAGGATAAGAAGGAGTTTGAGAAGAGGCATGTGTTCCAGCGGCGCAAGAGGCGGCGAGAAAACTTTGAGGCCAGCTTGATGAAGATGGGAATGGAGCTGGAGGCGACACAATCTGTGACCGATGAGAAACTGATGTTTTTGAAAGTCCACATGCCGTGGGACACGCTGTGCACATACGCCGAGGTCCTGCACATCAAGCTTCCCATCCAGCCCAACGACCTGTCGTCTCGCCCCTCCCCATGGCGCTTTTTCTCCTTCATTACCAAGCACTTCTACCCCAACGAAGACCTGATCACCAAGGAGGCCGAGTTCTTCACCGCCCCCTTTGAGAAAAAACGTCTGGAGTACTTCCACATGAGGGACAAAGATGTCTTCTTCACTGCGGCCATGAGGAGCAGGATGGCGTATTACATCCTGAGTCGTGCCCCCTTTGAAATACGGGGGAGCATAAAGAAGTTTGGCGTCACCAAACTGCTGGATGCTGGAGTGTACAAAGCTGCCTATCCCCTCCATGACTGCAGGTTCAATGTCAAGTCCAGAGAGGAGGGCTGCCCCAACGAGCGATACCTGCTCTACGAAGAGTGGGCTCATCCCAAAAGCTTCTACAAGATGCAACCACTAAACCTCATTAGGAAGTATTATGGGGAGAAGGTTGGCATTTACTTTGCCTGGTTGGGTTTCTACACGAGAATGCTCGCTCTGGCTGCCGTTGTTGGACTGTGTTGTTTCATTTATGGATACACGACTCAAGAAACCAGCACCTGGAGCAAAGAGGTGTGCGACCCTGAAATTGGAGGAAAGATTGTGATGTGTCCACAGTGTGACAGAGAATGCCAATACTGGATGTTGAACAGCACATGTGAAGCTTCGAAAAAACTTTGCATATTTGATAACTTTGGAACCTTGGTGTTTGCAGTTTTCATGTCAGTCTGGGtAACTTTGTTCCTGGAGTTTTGGAAGCGCTACCAGGCGGAGCTGGAGTACACGTGGGACACTGTTGAGTTTCTGGAGCAGGAAGAGCTGCCTCGTCCGGAATATGAGGCCAAGTGTATCTATGAGAGGAAAAACCCTGTCACAGGgGTAAAAGAAAAGGTGCCCTTTACAGCCTGTGGACAATGTGTTCGGGTGTCGATAGGAATTGGGACAGTCTTTTTCTGGATTCTGTTGATCATTGCGTCCATCGTGGCCATCATCGTCTACCGCCTGGCTGCATTTTTTGCCTTCTCAGCTAAACTCCGAACTCAGGACCTGAAGGAGCTGGAACCCATAAAGGAGTATGTGACGCCTCAGATGGCCACTTCTGTCACAGCCTCCCTCATTAGCTTTGTTATAATTATGATCCTAAACATTCTCTATGAGCGCGTCGCCGTCTGGATCACCGACTTTGAGCTTCCGCGGACCAAGACAGACTACGAGAACAGCCTGACCATGAAGATGTTCCTCTTTCAGTTTGTCAACTATTACTCTTCCTGTTTCTACATCGCCTTCGCCAAAGGGAAAGCGGTTGGCTATCCTGGAGATCCTGCTTATATCTTGGGAAAATACCGCAACGAGGAGTGTGATCCTGGTGGTTGTCTGATTGAGTTGACGACTCAGCTCTCTATCATCATGGGTGGAAAAGCCATCTTGAACAACGTCCAAGAGGTCTTGCTACCGTGGGTGAAGAATTTGATTTTCCGCTACTGCGCCAGTGCGACCTCAGAGAAATTGATTCCTCGCTGGGAGCAGGACTACCAGCTCCAGGCCCTTACAAAACTAGGACTGTTCTATGAATATCTGGAGATGGTCATCCAGTTTGGCTTTGTGACCCTGTTTGTGGCCTCCTTCCCTTTGGCTCCGGTCCTGGCTCTGGTCAACAACGTGTTTGAGATTCGGGTTGATGCTTGGAAAATCCACACTCAGTTTCGCCGCATCGTGCCAGAGAAGGCCCAGGATATAGGAGCCTGGCAGCCCATTCTTCAAGGCATCGCTATATTGGCTGTTGCAACAAATGCCATGATCATTGCTTTTACATCCGACATGATTCCACGGTTGGTCTACTACTGGTCTTTCTCTTTGTACCCATATGGAGATCACTCTAATAACACCATGCAGGGCTACATCAACAGCTCACTGTCTATATTCAACATCGAGGACTTCTCCAACAATAGCAAGCCGATGTGGACACCTTACAACATCACCACCTGCAGGTATCGAGATTTTCGGAATCCTCCTGGGCACCCCAGGCAGTATCAGTACAACGTCTACTACTGGCATGTGATCGCTGCCAAAATGGCTTTTATAATTGTTGTAGAGCACATTGTTTACCTTACAAAATTCATCCTGTCCTACGTGATTCCAGACGTCCCATACACTGTCAAAGAACAGATCAAACGAGAAAAATACTTGACCCAGGTCATCCTCCACGAGACCAACCTCAAGCTGGTGACCAGACGTTTGAAACCACTCGACGATGGGACACTCACGTGCCCGGAGGTGAACTTGACACAGGAGGAGATGGAACTCGATTTCTGATAGTAAAATGTATGGACGAAGAGATCAGaccatactgtatattcatgaCTACCCAGTTTTTTTTGCAGCACCTACCCATATTATTTAAATACTGACCAAAACTTTGGGAACCAGTGAAAGAATTAAGACTTGGAACAAGGTATGGACTTTTATTATGGAAAATGTATAGCAATCAGTAAAAAAGAAGACATCTGAAGTTTCTTTAACGGGCTGTTGAACAAAGAAaggagaaaccaccgttgtatAGTCTTCACCCCTGTCTACTGTCCTCAAACTCCATACTCTCATCAGGACAAAGCGTGTGAGAGGAAAAAGAACAGTGCATCATCCTCTATCACCTAAGAgtgtcttttttcattttcttctcaGACTGACCAATATAACAGACAGGATGTTTTGTAGCTGGAAGTACACAAACTAGGTGTGGGACCAACAAGTGACATGGCATTCTTTTGCACCACCATACAAACTCATTGGTACGAAGTGTCCCTGTTTGGGGTTAGGTTGGAGTTCAATGCTGAATCTGAATCCAGTATTGGATTTTAATCTATTTAGATTTAGGTTTTAACcagttaaaacaacaaaaattatacagtaaatagctttacttttttatatttaagcaCACAAACTCAGATAGGATGATGCTTATTAAGCTAAATGACTTGCTGGATGTTTTATGCATAGATTTTTGCAACCTGGTTTGGATGTTTGGATAGCATTTCACTAAACTGGGACTAGGACTTTTCATCTGTGTTGGCCTAAAATGTGAGATACAGTATGGCTGAAAGCTTCAGAAAAAGTAAGTGTGTAGACTTTGAGTtgagatttttgtttttgtcaaaaaaatatttttggggggcattttaggcctttatttttataggacagctgaagacagagagagtgggaatgacacacagcaaagggccgcaggtcggactcaaacctgcggccgctgcgtcgaggagtaaccCTCTATATGTGGGGgcgcgctctaccaactgagctacccaggcacccttgtcaaaacattttatggaTATTTTTACTCAGAGTGTCTTCCAGGTTTGTGACTACATTACATGTACCTTGGCTATATCACTGTGATGGTTCACTCAATCAATTGAGCTTCATGCTGGGGGATCCAAGCTTTCACACACACGTAACCAACCAGTGCCACAGCTGGGTTTAATGCTGTACCACTTTCTAATGCAATGTTGATGATTGATAGAGAGGGGATTTTTGCACTTCCATTTTTGTTACTAGAACTAAAAAGCTGAGGGGATctgttggagaaaaaaaaggctcACAATGTTACGTTAGAGTTCGAGTAGACATAAACTAACTTtagccacatacagtatattcactAAATGTGCCTCAAATACTTTTACCTCTGTAAaccttttaaacatttaaatgtttcaaAGGTTGTCATTATGTTGTTTGGATGGGATTCAATTACAGTACAGACAATTCAGAAAGTGAATTTATTTGACAATTCAAAAGTGATGCCATGTAAAGCTTTGatgtattcaagtttacagaccACAAGAAACTGAACACTTTTTCATCCTTTCACCAAATGTAGTTCAGTTATGCCTTTAGTTTTTAattcaattaatcaatcaatctcaGCCCTGTGAAGTGGTTTAGTTGACGATGTGAGTGTAGAGAGTATAGAGAATAGAGAGTCTTTCTCTATTCATGTACTCCCATCTACTGTACTGTTTTGCACTTTTAACTTACAGAGTTCCAGACCTGTACCTGGCTATGACCACTGCACTGCACTGCACATCATCAACATGTTAACTGCAAGTTATATCCTGTGATATTATGGGAAATACAGTCATTTAATCTTCTTCTGTGTCATTGCTGAAATCATAATACATTGTGATTTGAACAATGGTACTATAACcagggtccaaaattagcaccatcacaatatgcaagtggctgttAGATTTGCTATATTCACCAGCGAAATAACAAtagtaatctattgaatggctggtaaaatttgaacattcactaagTTAATTTTGGACCCTGACTATAACCACCATTTATGGAAACAGTATCATATACCATGTCTAAAAATGCAtttctttcttgtctttttgttttaacgcctcataaaaataaaaaaagctttgCTTGTGTGTATTAAGTCTTAGTTTAAAGACTTAAATATGAAAAACATTTCCACTGTTGTATGTTGATTTAATTTTACCTACCTTCTTCTCACCTCGGATATATTTAAAAGTTTGCTATGTGTGACTtgtaataaaacacaacagtgatgtcactgtaA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19500 ANO6, TMEM16F; anoctamin-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309114 lncRNA downstream 116940 14231543 ~ 14231806 (-) True G227814
XR_005638083.1 lncRNA downstream 129148 14178745 ~ 14219598 (-) True LOC120553016
TU309112 lncRNA downstream 168240 14178772 ~ 14180506 (-) False LOC120553016
TU309104 lncRNA downstream 205487 14140179 ~ 14143259 (-) True G227804
TU309070 lncRNA downstream 398865 13949541 ~ 13949881 (-) True G227784
TU309249 lncRNA upstream 57806 14424237 ~ 14426492 (-) False waslb
TU309250 lncRNA upstream 59687 14426118 ~ 14426492 (-) False waslb
TU309275 lncRNA upstream 267679 14634110 ~ 14635577 (-) False grm8a
TU309356 lncRNA upstream 269224 14635655 ~ 14643449 (-) False grm8a
TU309360 lncRNA upstream 403567 14769998 ~ 14770247 (-) True G228019
XM_039791291.1 mRNA downstream 675 14339398 ~ 14348071 (-) True pwp1
XM_039791293.1 mRNA downstream 10299 14334852 ~ 14338447 (-) True mrpl42
XM_039791292.1 mRNA downstream 14807 14326097 ~ 14333939 (-) True ube2nb
XM_039792037.1 mRNA downstream 39135 14290822 ~ 14309611 (-) True nudt4b
XM_039792313.1 mRNA downstream 58716 14276852 ~ 14290030 (-) True pkp2
XM_039791614.1 mRNA upstream 9205 14375636 ~ 14391277 (-) False LOC120553322
XM_039791615.1 mRNA upstream 9205 14375636 ~ 14391276 (-) False LOC120553322
XM_039791612.1 mRNA upstream 9205 14375636 ~ 14391276 (-) True LOC120553322
XM_039791673.1 mRNA upstream 25961 14392392 ~ 14397779 (-) True LOC120553347
XM_039791677.1 mRNA upstream 34796 14401227 ~ 14406493 (-) True LOC120553349
unassigned_transcript_1491 other downstream 539067 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 689474 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 818968 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 2060592 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2499805 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 693572 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 695832 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 1404807 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 2382411 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2928691 17295122 ~ 17302198 (-) True G228465

Expression Profile