RNA id: XM_039791302.1


Basic Information

Item Value
RNA id XM_039791302.1
length 4991
RNA type mRNA
GC content 0.58
exon number 22
gene id magi2a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9334502 ~ 9594691 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgcgctGATATGGATACGATTGGCTTTTACTGTTGAAACTGGACACATTACAGTGGTACGGTGACAGTGGAGGACTTCGAAGAGCGGTAAAACTTCTTCCACGGCCGCACTCATGTGATTTCCCCTTGTTTGAGCCATGTCCAAGAgcctgaggaagaggaagaaccaCTGGACTAACAAAGTCCACGAGAGTGTCCTTTGCAGAAATGAGGAGGGGGAGCTGGGGCTGGAGTTGAAGGGCGGCGCAGAGAATGGACTGTTCCCGGTTATCGGCGAGCTTCTCCCGGGCAGAGCGGTCTGCCACAGCGGCAAACTCTGCCAGGATGAACTCCTCCTGGAAGTCAATGATACCCCAGTGGCTGGTCTCACCACCAGGGACGTCCACGCTGTGGTCAAACACAGCAAAGACCCCGTCCGAGTCAAGTGTGTCAAACAAGGGGGCGTGATAGACAAGGACCTGCGCCACTACCTCAACCTGCGCTTTCAGAAAGGCTCAGTGGACCACGAGCTGCAGCAGATCATCCGGGACAACCTCTACCTCCGCACCGTCCCCTGCACAACCAGGCAGCCCAAGGAAGGAGAGGTCCCAGGGGTGGATTATAATTTCGTGACCATTGATCGGTTTATGGAATTGGAGAAAAGTGGAGCCCTGCTAGAGAGCGGAACATATGAAGATAACTTTTACGGCACCCCGAAGCCTCCGGCCGAGCCCAGCGCTCTGCTGCTAAATGTAACAGACCAGCTGCTGCCGGGCGCCAGACCCACCTCCGAGGGCAAGAGGAAGCGTAACAAGTCGGTTAGCAACATGGAAAAAGCCAGCATCGAGCCccccgaggaggaggaggaggagagacccGTCGTCAATGGCAACGGTGTAGCTGTCACCCCAGAGTCGAGCGAACATGAGGACAAGAGTACAGACGCTTCGGGGGACATCGCCCCGCAGGGCATCCTGGCGGATGCCCCACCTGAGGCGCCTAAAGACGACGGACAGTCCCCGAAAATGACACTACCCAAACCAGATGAGAACGACGAGCTAGGGCCACTGCCAGACAACTGGGAGATGGCATACACCGAGAAAGGAGAGGTCTACTTCATAGACCACAATACCAAGACAACATCGTGGCTGGACCCGAGGCTAGCCAAGAAGGCAAAGCCGCCCGAGGAATGCAAAGAGGATGAGCTTCCGTACGGCTGGGAGAAAATCGATGACCCCATTTACGGCAGCTACTATGTTGACCATATAAATAGAAGGACTCAGTTTGAGAACCCAGTCCTGGAGGCTAAAAGGagactccagcagcagcagcagatgcaAAGCCAGGGTCTGTCCTCACTGCCCCTTCCCACCATCTACAGAGAGAAGCCGCTGTTCACGCGGGACCCCACTCAGTTGAAAGGCAGTTTCTTGTCCACATCACTCCAAAAGAGCAACATGGGCTTCGGCTTCACTATTATCGGAGGCGACGAGCCTGACGAATTCCTCCAGGTCAAGAGTGTTATCCCCGATGGGCCTGCCGCAGCTGATGGAAAGATGGCCACAGGGGATGTCATTGTCTACATCAACGATGTGTGCGTCCTGGGCACCACCCACGCCGATGTGGTCAAACTCTTCCAGTCGGTGCCAATTGGCCAAAGCGTCACCCTTGTCTTGTGCCGTGGATACCCTTTGCCCTACGACCCAGAGGAAGCTGccaacaccaacaacaacactACCATCATCTCCCCGCTGGGCATCATGGAGCAGCGGCCCATCATGGTGAACGGCAGGACGGGCTACGACAACTACCTGGACTATCTCTCCCGCACGGCGCGCTTCGTCACAGACCCCGGTCAGGACCAGGTCAATGCCCAGCAGCAGCTGCTCACCCCTCACCCGGGTGACACCCACTTAGACGGCTCGCTTCCTCCCACCACCGGCACCACACCTCCTGACAGCGTTTCCATGGCGTCGTCGGGGGCGACCCAAGGGGAGCTACTGACGCTAACCATGGTGAAGGGCATGGAAGGTTTTGGCTTCACTATCGCTGACAGCGCTACAGGCCAGCGAGTCAAACAAGTGCTAGAGCCTCTGGGCTGCCCGGGTCTGTTCGAGGGTGACCTGATCGTGGAGATTAATAAGCAAAACGTGCAGGGATTCGCACACACCCAGGTGGTGGAGCTTCTCAAGGAGTGTGCAGTGGGAGCCGAGACCAGCCTGGTGGTTCAGAGAGGTGGAACAGGTCACTATTCACCCTGGAAGACCCCTAAGCAGGTGCTGGAGCAGTGGGAGTCCCAGCAGGGCCAGGGCAGCCCTGCTCAGACCAGCCTGTCAGCCCCCGTTATTCCCCACAACGCCCCCTTCCCAACACACCATCTCCACAGGGCCTCTGTCCCAGACTCAGCCTCCGAGGCCTTGGCCCTGGCTAAACCAGACCCTTATGACCTTTATGAGAAGTCCAGGGCTATCTATGAGAGTAGGCaacCAGGCCAAACAAGGGCAGTCTTTCCTGTGGACTCCTCAGGAGCAGAGTATCAGGACATAGAGGTGCACCTGCGCAGACAGAAGTCCGGCTTCGGTTTCCGGGTGCTGGGCGGGGACGAGGCAGGGCAGCCTATCTTGATCGGGGCCATCATCGAGAAGAGTCCGGCAGATCTTGATGGGCGCTTGCGGCCCGGTGATGAGCTGCTGTTTGTGGACGGGATCCCAGTTGTGGGGAAGCCGCACAGATATGTCATTGACTTGATGCACGGAGCGGCCCGAAACGGCCAAGTGAATCTGGTCATCAGGAGGAGGGTGCAGGCAGCAGGTGAGTCCTTTCCAGAGAACGGTCGTAGCCCGGGCTCTGTCTCCACGCAACACAGCTCCCCACGCAGTGACTTCACCTATGGCAACAGCACCAGCACTACCCAGGCACCCAACGCCAACATGGGCAACCCAACCGCCGCTTCGGACAGGACGTCGACCCCCAACACACAACCcagtgatgtcatcatcaaTCGAAAGGAGAGCGAAGGCTTCGGCTTCGTCATCATCAGCTCGCTCAACAGGCCGGAGGCGGCCGCCACCAGCACTGTGCCGCATAAGATTGGCCGCATCATCGAGGGCAGCCCGGCCGACCGCTGCGGGAAGCTGAAAGTGGGAGACAGGATACTGGCAGTGAACAGCCAGTCCATCGTCAACATGCCACACGCCGACATCGTTAAGCTGATCAAGGATGCGGGCCTCAGCGTCACCCTGAAGATTATACCGCAGGAGGAGAGCAGCAATCCCCCATCAGCCCCTAGCTCTGAGAAACAGAGCCCCATGGCCCAGCAGCACAGCCCGAAGACCCAGCCAAGCACCGCTGCCTCACTGCCCAACCCAGCAGTCACAGAACCCAACCCTTTGGTTAACCAGCCCAATCCCATGCCTCACCAGAGCCCTGTGACCCAGCtgcccacccctcctcctcagACCTACACCCACGAGAGCAGTTTCAGGTCAGAGGTGAAAGCAAGGCAAGATGTTAAACCAGACATCAGACAGCCACCATTCACAGATTACCGACAGCCGCCGGTGGACTACCGGCACCCTCCTGTGGCAGACTACAGGCAGCCACCCACGTTGGACTACAGACACCCGCCGTTGCTCGACTACAGACAGCTAGCTACTGACACCAGGCAGTTCACCATCCCGGACTACCGAATGCCACCAGTTCAACTTTCACAGGACTTCGACTTTTTCACAGTGGAGTTGGAGAAAAGTGTGAAAGGCTTCGGTTTTAGCATCCGCGGAGGGCGGGAGTACAAGATGGACCTGTTTGTCCTACGCCTGGCAGAGGACGGACCGGCCATCCGCAACGGGAGGATGAGGGTTGGGGACCAAATAATTGAGATCAATGGAGAGAGCACCCGGGACATGACCCACGCGAGGGCCATCGAGCTGATCAAGTCTGGAGGCAGACGCGTTCGTCTCCTCCTGAAGAGGGGTACGGGGCAGGTCCCAGAGTACGATAATGCCGCCCCATGGGATGCCTGCCCTTCAGCCTCCCCAAGCCTGTCGGAAGTAGCCCCTCCCATCGACAGCCTTTCCATGTCATCGCCTTCATCACATCTGGCCCCGGCCCCCGACCCACCTCACCTGCCGCCTCTGGACGTCCCTCAAGACCCGGTGGCACGAGACAGCTGGACGGAGCGTTCGAAGAGCCCCCAGAAGGCAGAGCTGCTAAATCCAGAGCCGATCAGCCAGGGGAGAAGAGCGGCTACAACCGGCGGGAGCGGCAGAGCCAAGAAGGGGGGTGGCAGGTCCACCCACAAGGGGCACAGGGTTCAGCCCGCTACTGAGGGGGAAGTGGgcaaggagtggcagaccggggagCTCAAACCTTCCAGGAGCACCAGAGGGAGGTCCAAGGAGAGATTTACTGAGGACAACCGAGAATCCACCGAATCTCCCAGCAGCTCCAAGCTCCCGCACACCAACGGGAACAGCAGGGAAGATGTGGAATGTTACGGTGGAGGGCAGCAGGTGGAGTCGGAGCAGAGCAGACCCAGGCCCAGGGAACTGGACAGGGGCCTGGGAGAGAGCCGGCCCAGCCTTCCCAACAAGAGCACCAGCAGCGGCAGCGCAGCAGGGAGGAAGGCCACGGTCTCTCCTGGGCCTTGGAAGATCCCTGGATCAGACAAGCTGGCCAGCACACTGCACACAGGCACGTCCACGCTGAGCAGATAACACCGCGGCTCCAGCAGAAGACAGTGGCCACACTCATCGAAACTAAACCACCGCATGTGGACGAAACCACCATCCTCACACCTTCCTGTGCTCCTTTATCCCCACCCCCCTCCATCCCGTTCTACCATAGACCACAGAGTCCGAaaccaagggggggggggggcagggtgATCTGGACCACGTGTTTTTAGAGTTTTATTTATGATATTGTACTCTAAAttattttgagaaatattttacaCCCACCACCTTAAGAACTGGAAAATCAtccactttcaaaaaaaaacaaaagaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307615 lncRNA downstream 214531 9116810 ~ 9119971 (-) True G226803
TU307611 lncRNA downstream 294645 9037771 ~ 9039857 (-) True G226800
TU307604 lncRNA downstream 305132 9029046 ~ 9029370 (-) True G226797
TU307592 lncRNA downstream 364604 8969389 ~ 8969898 (-) True G226787
TU307503 lncRNA downstream 411558 8918491 ~ 8922944 (-) True G226711
TU307780 lncRNA upstream 147313 9742004 ~ 9742560 (-) True G226917
TU307910 lncRNA upstream 623395 10218086 ~ 10220450 (-) True G227019
TU307912 lncRNA upstream 626265 10220956 ~ 10284085 (-) False G227020
TU307914 lncRNA upstream 628803 10223494 ~ 10225897 (-) True G227021
TU307913 lncRNA upstream 679641 10274332 ~ 10284085 (-) True G227020
XM_039791668.1 mRNA downstream 7374 9274169 ~ 9327128 (-) True si:dkey-97m3.1
XM_039792212.1 mRNA downstream 68256 9243404 ~ 9266246 (-) True kdm7aa
XM_039792210.1 mRNA downstream 101149 9202894 ~ 9233353 (-) True kmt2e
XM_039791815.1 mRNA downstream 201794 9120327 ~ 9132708 (-) False orc5
XM_039791760.1 mRNA upstream 53799 9648490 ~ 9669535 (-) True gnai1
XM_039791882.1 mRNA upstream 86516 9681207 ~ 9722456 (-) True sema3c
XM_039792510.1 mRNA upstream 159052 9753743 ~ 9770326 (-) False LOC120553797
XM_039792507.1 mRNA upstream 159052 9753743 ~ 9762006 (-) False LOC120553797
XM_039792509.1 mRNA upstream 159052 9753743 ~ 9762001 (-) True LOC120553797
XR_005638147.1 other downstream 540592 8565242 ~ 8793910 (-) False ppfia2
XR_005638146.1 other downstream 579670 8572959 ~ 8754832 (-) False ppfia2
XR_005638142.1 other downstream 579672 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other downstream 579673 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other downstream 579673 8565242 ~ 8754829 (-) True ppfia2
unassigned_transcript_1484 other upstream 601093 10195784 ~ 10195870 (-) True trnay-gua_60
unassigned_transcript_1485 other upstream 601656 10196347 ~ 10196433 (-) True trnay-gua_61
TU308019 other upstream 918803 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 1385507 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 2029318 11624009 ~ 11676832 (-) False pcloa

Expression Profile