RNA id: XM_039791335.1


Basic Information

Item Value
RNA id XM_039791335.1
length 5079
RNA type mRNA
GC content 0.49
exon number 18
gene id foxp2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16059509 ~ 16164905 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTGAATCGTAACGAAAAAAAACAAGCCGCGTCTTCCTCGCATTGCGCGTCATTCAAACAGGACTCAGTGTACTGCTTTTCCCTCTGTTGCATTAGTAATAACAGCGGCGTTGACGGGAGACAgcaggagagagtgtgtgtgtgtctccgacAGCGGTGCCCAGCGGAGGAATATTGAGCTTTTTATTTACTCTGCAGCTTGTTGTTCATTTTCTCTGCGTTATGGTGAACTTGTACAGTCACGTGTGAAGATCTCTGCAAACATAGAGGACGACGACTTCTCACCTGGTGTGTCCCTTACACTTTACCGCGAGGAGAATATACCTGCCATTTTTTTGTGATAGCTGACATCACTGGACTCCTTCCACTCCTGTGACGGACAACAACCGCAAGTTCTCTCCCTTAGGgATGAAATATGCACACTCTGCGCCCGTAGAAAAAAGCAGACGACACACACTGTAAAGTCCAAAGTGGCCCTACAAGCAGCGAGGCAATTACTCTTGCAGCAGCCAGGCAGTGGCCTGAAATCTCCAAAGAGCCAGGACAAGCAGCGTCCACTGCAGGTTCCAGTGTCAGTGGCCATGATGAGTCCCCAGGTGATCACGCCGCAACAGATGCAGCAGATCCTCCAGCAGCAGGTGCTCTCCCCCCAGCAGCTCCAGGCCCTGCTCCAACAGCAGCAGGCGGTAATGCTgcagcagcAACACCTGCAGGAGTTTTATAAAAAGCAACAGGAGCAGCTTCATCTGCagcttctccagcagcagcacccTGGCAAGCAGGCTAAAGAGcaacagcagcagcagcagcagcagcagctggccgCCCAGCAGCTCGTCTTCCAGCAGCAGCTCCTGCAgatgcagcagctccagcagcagcagcacctgcTCAACATGCAGCGGCAGGGCCTGCTCTCGCTGCCTGGGCCCGCTCCCGGCCAAGCCGCCCTGCCCGGACAAACCCTGCCCCAGTCAGGTAAGAGGACGAGGAGGGCTGGCGGAGtggaagaagagaggagaggcacTGCTGGCCTAAGCCCCGCAGAGCTCCAGCAGTTGTGGAAGGATGTGACTGGAGGCGGCGCTCACAGCATGGAGGACAACGGCATCAAACACAGCAACAGTGGCACCGGCAACGGCGGGGGTGGCGGCGGTTTAGACCTCTCCACCAACAACTCTTCCTCAACTACCTCCTCCTCTAATCCCGCCAAAGCATCGCCGCCCATCTCTCACCATTCCATCGCCAATGGACAGTCCCCCGCCCTCAAccacagaagagagagggaaagggaaCGGGAAAGGGAGCGAGAGAGTTCACTACATGAAGAAAGTGGAGGGACCCACCCCCTGTATGGCCACGGCGTGTGTAAGTGGCCCGGATGTGAGAACATCTGCGAGGACTATGGACAGTTTTTGAAGCACCTAAACAGTGAACATGCCCTGGATGATCGGAGCACAGCCCAGTGTAGAGTCCAAATGCAAGTCGTACAGCAGCTGGAAATACAACTATCTAAAGAACGTGAGCGTCTTCAGGCGATGATGGCCCACTTGCACATGCGGCCCTCGGAACCCAAGTCATCTCCCAAACCACTCAACTTGGTCTCCAGTGTCACCATGTCCAAGAACTTGCCCTCAACATCGCCTCCCAACTTACCTCAGACACCAACCACGCCCACAGCACCTATCACACCCATGGCTGCCATGCCCCAGGTGCCATCAGTACTGGGAGGAGCAAACGTCCCCAGTATGGGAGCCATGCGCAGACGCCACTCGGACAAATACTCCATGCCTCTGTCGTCAGGTGGTgacacagtatttatttttccagAGATTGCCCCAAACTACGAGTTTTATAAGAACGCAGATGTCAGACCGCCATTTACTTATGCAACCCTCATAAGACAGGCTATCATGGACTCTGCCGACATGCAGTTAACGCTTAATGAAATCTACAGCTGGTTCACACGCACGTTCGCCTACTTCAGACGCAATGCTGCGACTTGGAAGAACGCTGTTCGCCACAACCTCAGTCTGCACAAGTGCTTTGTGCGTGTGGAGAACGTGAAGGGGGCGGTGTGGACCGTAGATGAGATGGAGTACCAGAAACGCAGGTCGCAGAAGATCACAGGAAGCCCATCACTTGTCAAGAACCTGCCCTCCAGTCTTGGCTATGGAAGTGCACTAAACGCCAGCTTACAGGCTGCCCTGGCAGAGACCTCCCTGCCTTTGCTGGGGACCCCCGGCCTCATGACCAGCGGCTCCACGATGGGAGGCAGCTGCCACGGCCTCCTCGGTGGAGACCCGTCCATCCTGACGGGCGGAAGTCCGCCTGGGCTGTTGGGAGCGAGTCCACCCGGACTTTTGGGCGGGAGTCCACCAGGACTGATGGGTGGCAGCCCCCCAGGTAGGCTGAGCGGCAGCCCCCCCACCCTGTTGCATTCCGCCCATGAGGGTCTCAACGGCTCACTCGACCATCTGGACACCAACGGACACGGCAGCCCCCGATACTCCCCACCAGTACACATTGAGTGGCTATGGAGGAGGAgatgcatccatccatccctctctgcctccctccctgcctccatCACCGCCTGCCTTTACACAGCCACGACAGCCTCAAAATGGAAGAAATGTGTTTTCCATGACTGGCTTTTCCAGGATGTTGTTTAAATAATGGAGTGGCTTGTAGCACTAAACTAAATAGTACATCGCCTTAAAGGCCTTTCTCAAGAGAGGACTCCTCAGCACAACCAAGTCAATCCAACAATTAGACAAACCACTCCTTCCCCTCAGCGTCTGAAGGTTAATGCTATCTGCTTAACCGCAAACCAGATCGCCCCAGGCCATgctgagtgtgtgcgtgtgtttgcacttgtgtgtatgcatgtgcaaTACACTTATGCACCCCCTAAGGGCTATGCTTAAAAGAAACAGTACTGTACGCCAGGACAGACTCTGCCACTGTAAATTCAGGGTTTCCAACATGAGCAAATTAGCAACTTCACACAAGAAGAAAATGACCAGAGTATAATATTTATTTCTGGAAACCGTCATGCTGTACCTGAATGAAAGCGGGAAAATAATCTATTTAATATCACTATATTTTTTTCTTGCGCTGTCACATCTAATTGTTTGGTGACCACCCCTCTTTGATGTTAGTTAATGAATCACAATGAGATGTCCCCTCAGTCCTCACCCTGCCTTCGCCTGCCTTTCCTGCCCCACACCACCTCTCCTGTCCCCCAACCTACCATTAGGCCCATGGACTAATGACATTATTTGCATCCCTGACATACCTCTGCATGATTGCTGGTGCTAATCTCCAATTGATGGGAGAGCAGGCATCTCGAGatcacgcacacatacacgcagaGGACCACATATTTATTTCACTGCAAAGTCCAGCGTTTACTCCTGAGTGACTCAATAATGGCAGCTAGCCATTAAGTACTAAATGGCTCATCCACATGTTTTAATAAAGTGTCAGAAAGCTCAGGCCTGTGAATATGGTCCTGCATATTTTTCATCAAAGCTCACAAACAACTTATGAGCTGTATATCAGAATAACAGAGGAGAAAATTGGTAAGCAATATATACAGATTTAATGCATGGTTTATAAtgcactatatactgtatgtggttgTAAGCAGAGTAGTGTTATTAATGCATTTGTCAACAACTATAATTTCTCCTATGGGCTCCCATAAGTGGAGGCCGGTATGTAAACGGATAATATATGAAAACACAGTTGTAATAAcatgacatttttattcatAGAAACGGCAATTATAGACAAATGCTGTACATGTAATAATCACTTATCACTTCCTTATAGTTGGTAAACCTATGTTATAATCTGCTTATAAATGCAAAATAGAGGgccttaaagtaaagtgttaccatgtACTTTTATCCTTAATCATTTTGGTGGTGGTTTCAATGttaggcttaaaaaaaaagccaatacCCACATTTGAAAAGCTGAAGACAGAGAATGCATTTTTCCTTCAAAGCTGTTGTTGATAAATTGTCTGCATGTAAAGTTTCCCAATGGTTTCAGCACTAGTTAAATTGGATATGAGACCTCTTAGCACttgtaattattttattaaaggACATGAAAGAATTAAAATGAGTAGTCTGATAATACTGCATTTTACAAAACAACAGAAATTAATTCACctattaagaaagaaaaaaaaaaaagtcttttcaTTCAGTAGATTTAGTAGATAGTTTCTGTTTGTGTAACCTCTGGCCGAGGCGTTTCTCTTTTGCCTCTCTCTGCCTCCGTGAATCTGAGGGCCAGAAACAGAACTATTCATCGCTCCGCTTGCGTCCTGCTAAGATCGGCCTCCTCTCTTCATTCCACCACATCAGCATTAATTTACAGTATTTGGCTCTGAATATTAAAGTCATCTGTACCTTTTAAAATTCCTTTCAAATTCAAaggccccctcccccccccccttccactGATGAAGGCAACCCAGGAGAGAGGCTATGAGACGCGTCCTAACGTACCACCACTTGATacgtctccctctctctcccctctctcctctttcaaaGTCTAGGGGGATTTTCTGATGCATCCGATGTGTCAGAAATAATTAGGTTTTGTCAGATTTATCATCGTGGCACAAACCCCTTTCCCAGACTAGGGCCCCATATCATGTTATgccttgtttgtgtgtgacagcattattattctttttagtCGCCCAACACTTTTCTTCTTCCGCCCACTCCTCTGTTGTTCTGAAGGCAGAGGCGTCCGGctcactgctgctgcttcctgcCCAGTGCTTATTGACAGTGGCTAAAGATATTCATCCATTTAGAGTTAAAAACATGTATCATGGTGTCCGAGCAAACTGCCGGGGCTGAAGTTGATTAATGGCAGAACCTAGCTGCCGGTTTTTCCTCTTGAGGAGCGACATGCACATCCCCTGCATATTAACGAGTGGCTGCGCTTTCTATTAACTAGATAAAAAAGCCTCTCCTCTGCCTTTGCTCCAGGGGGCTCAGGGATGAGAAATTCTCCATTATTTATCATGTGGCCTGTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309501 lncRNA downstream 532430 15531131 ~ 15531439 (-) True G228120
TU309482 lncRNA downstream 553087 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA downstream 553087 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA downstream 553087 15499836 ~ 15510782 (-) True G228111
TU309475 lncRNA downstream 570452 15492354 ~ 15493417 (-) True G228109
TU309647 lncRNA upstream 51212 16216115 ~ 16224149 (-) True G228221
TU309734 lncRNA upstream 371115 16536018 ~ 16536293 (-) True G228283
TU309741 lncRNA upstream 581840 16746743 ~ 16747040 (-) True G228290
TU309755 lncRNA upstream 659926 16824829 ~ 16831239 (-) True G228295
TU309834 lncRNA upstream 749704 16914607 ~ 16949806 (-) True G228360
XM_039791848.1 mRNA downstream 26711 16015688 ~ 16037158 (-) True mdfic
XM_039791844.1 mRNA downstream 266661 15790148 ~ 15797208 (-) True LOC120553448
XM_039791843.1 mRNA downstream 293865 15767697 ~ 15770004 (-) True LOC120553447
XM_039791835.1 mRNA downstream 303375 15751064 ~ 15760494 (-) False pnpla8
XM_039792229.1 mRNA upstream 157212 16322115 ~ 16329608 (-) True ifrd1
XM_039791234.1 mRNA upstream 470968 16635871 ~ 16652133 (-) True LOC120553145
XM_039791733.1 mRNA upstream 690089 16854992 ~ 16866194 (-) False LOC120553389
XM_039791732.1 mRNA upstream 690089 16854992 ~ 16866194 (-) True LOC120553389
XM_039791734.1 mRNA upstream 690089 16854992 ~ 16865508 (-) False LOC120553389
TU309610 other downstream 272016 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 975540 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1002440 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 2254190 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 2404597 13651662 ~ 13659272 (-) True LOC120553486
TU309744 other upstream 583939 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1130219 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 1665769 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 1665769 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 2204772 18369675 ~ 18421407 (-) False gramd4a

Expression Profile