RNA id: XM_039791348.1


Basic Information

Item Value
RNA id XM_039791348.1
length 5773
RNA type mRNA
GC content 0.45
exon number 14
gene id tbc1d22a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18134084 ~ 18270751 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaatcacagcagccTTTCTTGCCGATTAGGCAGTATCAACATGGCAGCTTTCTGAGTTTTGGAGGAGGGTACCTGGTGTAAATAAACACGAATTTCACGTTTTACAGATAACGACAGCgttcgtgtgtttgtgtttaaggCTGGTTGGACCATAGAGGGAAAATGTCGAATGACGGAAATAAAAAACAGTTCTGGAAAAGAAACGCAGCGAAGGTTCCTGGCAGCATTCAGCATGTGTATGGCGCACAACATCCACCTTTCGACCCGCTCCTACATGCTAACCTGATTAAGGCAGGAAACAGGCCTCCTCCGGCCACGCCAGGCAAGCCCAAGAAGGCTACCACCTTTCAGGAGTTTGAGAGCATCACAAGTGATGCATGGGATGTTGGGGACGATGACGACGAGTTGCTGGCCATGGCTGCACAGAACCTTAATATTGATGTTGTCATGGAGACAGCCAATAAGGTCATTGAGAATCACAGCAAGCAGCAGGAGAAACAGCGGCAGGATGACACAACAGAGCTGgaacagagagaagaggacaCACAGGAGGAGGCGGcagaggacgaggaggaggacgaaGACGATGAGGAGGAcagggtgggggagggggacgTGACCAGCCCAGACGTCTCTTTTGCCTCCCAGAGCAGCCCTTACACTGATGGCCGCCTTGTAAAGTCCCAAAGCGAAGCTCCAATTGGGTCACCAAAAGATGCAGCAGGTGAGCATGCAGCCCTCCACAGACAACGGTCTCTGCCCCACCGGCCGCCCCTCATCCCGCTAGTGGCTCGCATGGCTGACCAGAACACGTCTGGCACCCCAGCCATGACCGAGAGGGAAGCGTCTCGTCTGGATAAGTTCAAACAGTTATTAGCTGGGCCCAACACAGAGCTGGAGGAGCTACGGAAACTCAGCTGGTCTGGAATCCCGCGTCAGGTCCGACCGATAACGTGGAAGCTCCTTTCGGGTTACCTACCAGCTAAtgcagaaagaagagagagcgTCCTacagagaaaaagacaagaatatTTTGGCTTCATCCAGCAATACTATGACTCCCGCAATGACGAACACCATCAggacacatacagacagATCCACATAGACATTCCCAGGATGAGTCCTGAGTCTTTGGTGCTGCAGCCAAAGGTGACAGAGaTTTTTGAGCGGATCCTTTTTATCTGGGCCATACGCCATCCGGCCAGCGGCTACGTGCAAGGCATCAACGACCTGGTCACGCCGTTCTTCGTCGTCTACGTCTTTGAGTACATTGAGGAAGAAGTAGAAAACTTTGACGTGTCCAGTCTCCAGGAAGAGGCTCTGAGGAACATTGAGGCTGACAGCTTCTGGTGCATGAGCAAACTGCTGGACGGCATCCagGACAACTATACATTTGCCCAGCCAGGCATCCAGAGGAAAGTCAAGGCCCTGGAGGAGCTGGTCAGCAGGATTGATGAGTCTGTGCACCGCCACATGCAGCAGTACGAGGTGGAGTACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTCCTGATGAGGGAGCTGCCATTACGCTGCACAATCAGACTGTGGGACACCTaccagGCTGAACCAGAGGGCTTCTCCCATTTCCACCTCTACGTGTGCGCTGCCTTCCTGGTGAGGTGGAGGAAAGAAATTCTAGAGGAGAGGGATTTTCAGGGTCTGATGATCCTCCTGCAGAACCTTCCCACAATGCACTGGGGCAACGAGGAAGTGAGCGTACTGCTGGCTGAAGCCTACAGGTTGAAGTTTGCCTTTGCTGACGCGCCAAACCACTACAAGAGATGATAAGCGTGGCTCGCTGCAGCTGCTCCCCTTCTTCTCCTGTccttgctcctcctcctcttattCCTCCTTTCCTGCTCTGCAGTCGTCTACTGAACTTAGAGGCCTCTTTTCCTTCAGGGAAGGACCTCCCTTTTTCTTAACCTCCCTTCCCCCATATTGCCCAATGGGCCTTTCAGCTACTAAGAGATTAGAATCAACCAATGACTGAGAGGACGTGCGGTGTAGCATTTTAACATATTGATGGTGgagcctttttgttttttattataattatttttctcCGATCAGCTCTGAAATGTGCTCTCCTTCAGTCCAGTGCAGAACCCTCTTCAACACTGAAGGCCACAACTTTTCATTAGAGTTTGGTCCGCTCAAGTACAACCTCGGGCCTGATGCAGGACCACGAGCTCAGCGCTGCCGGGAGGTTAGTCTGGCTcagaacatttttcttttctgctaaaaaagaaaaaattcaaATCCAATGCCATggcaatacatatttttttgtgtgtcctgAGGCCAAAATGTGACCTTTGTTTCAGTTtgcaaagacaaagaaagataGCAAAAGGGCACTGCGCTGGATGGTTTACATATCTGAGCCCGCTCTCCTGGTCACAACACCACCTGAAGGAACATGACCTCTcctgttctttttttctgtctttttattttgattttttttctcctcctgctGCGTGCCGAGAGGGGCACCGTTTGTTTTCCTTCATGACAAACTAACAGTAGGactttacagagagagagagagagattgtcaGTCTGTGAGGGGAAACGTGTCTCCCTCCTTCTACAATCCACAAACACCAACCCAATCCCTCCCCCTTTAcgccatcctcctcctcccccccccccccgcactGCAGAGCCCCACGCAGATCGACATCACAGATGCTAATAAGCCATTTGGAGGAAGAAAGCTACTTATTCCCACTCGAcctgcttatatatatataaaagggcCATGTCTTATCTTTTAACCACCCCTGGTTTCTGAACCCAGGACTACCTCAGAACACACAAGTAGTGAAACCTAGAAATCCACATGCACACATTTGCGCATATGTCGTTAAATTTAGAAACATGCACACGTCAGTACGGGGGCAAAATAAACTCTTTCAAGTTCAATTCCGAAATGGAATCATCTCATGGAAGCTAAATTAGGATATTTACACCAACTAAAGTGCTTCTTCACAGGGTTGTTTATGAAGTAAGATCCAAATGAACAATTTTGCCTTAATTAAGATCCAAGCTGTCTTTGTTtactctcccttcctctcctgtCTTTTGGGCCCAATTGTTATGGGTGAACAAAAAATGTGACATGCCACGTTCCAATATGTCTGACGATATGTCTCCAATATGTCTGACGATATAGGTAGAAAGAGTCTCTCCACAAAGTAGTTCCACCtaaaaaaactttaattcaAGTTATGTCGAGGGGACACCAGTGAGGCCGTTTGCGCTGAGCTCAACCTGATTGACTGATTCTTATTAATATTCCTTCCACAAGGCCTTCCTAGTCACTTCATTTTAATGTCTATAAACATATGAAAGCAACAGGTGcacaggtgttttttttgcagcttcTTCATTTAAGGAAGTcttgcacctttaaaaaaaatttaataaaaaaaaaaaaattacacatgttTGATCCATATTGGTTCTCCTAATTGAATCATGTGTATCCGGCACCAATCCTGTTTCGATATCCTCCAGGTAGTCAGGGTTTAGCTGCCTTTTTTTTCCTGCCTTGTGTAGCAAAATTAgtcttgatttttatttttattttcaaaattccCTTTTAATTTCACAAGGGACAGACCCTTTGctgtttataaaaaacaaaacaatagaaTAGAGCAGAATCATGGCTTTAAATATCAATGACCGAAACATAACGATTACATTCACCCTTTAATGTAAAATACATAGCATATAGCGAGCTGCACATAACTGAACAAAAGCAGCAGGTGCATTACAATAGAACCTTAATATTCTTGTGCACAGGACTCCCTGATTAACATCGTCTTTACACTACCTTTGTCTTTCTCCTGTCTTTGTCGCTCTCTTCATAAAGAGCACATGGGATGTTTTACCCAAAGTCAGTAGCACCATATTGGTGTAATGTTAGGGGATTGATGTTTAAGGGATTCGGGGGGGGGGTAATCAGACATTCATGACATAACACATAGCTGTTAACGTCTAGAGCCTCCTGTTGCGACTCCGCCAGGATCCATTATTGTCACCCCAGCCCACAAAGACGGTGTGCGTAGGTGTGTGAAGGggagatggaaggagagagggacgagtgttgtgtttcttttggaAGTTTCAGTGCTTTTTTTTCCGTGAGAGCTGTCAGTCTTTGATCACACTTTGGATCTTTTTTTATCCAATCTGCACCAGTCTCACAAGCCCCTCATCTCCTATGCTCTCTGacgaggaaaaactgcacttaaTTTGAAAGTCTATagcctttttttccttcttgtctctctctctttttctctctctctctctctctctctctctctctctctttttttgtatgAGATTTATTCTTTCAATTTTACAATTTACAGATTGGTCTTTTCCATTTTTTGGGTTTTATGTTgttatgctgtttacatgacaaGCCTATTAAGTTGTGCCTGACTCTGGAGACATGAGACAACATCTTAGTTATGTTTTTGACTTCAAATTTCTGGAAGCAATAGTATCACCTTTTGCATTTGCtgtgaaaagacagaaaatatcTTTTTGTTTGTGCACATCTATTTTTTGGGTGCGTTAGCCACCAACATGAACTGTTTAATACCGTAAAACTCTGGGGCATTTTAATAGCTCAAACTCGGCAAATGATGGTTCGCTTTACCCCTCCCCTGAACATCGGTTGTAACTACAGACAGCACGCCTGTCAAGATTTGGACGTCACCACATGTTGAAGCTGTACGCATAGGGCTGTAGtgagtttttctttatttattttttagcctttccaaaaccaaaaacacaaggTAAAAGTTTAAGGAACTCTTGTTTACTACCAACAGTAGTAACCTAGAGTTACTTTTACATCATTAGCTAACTACATTAGTTGGTGTGGTTACAAGTTATCAGAAAAAATCTAAAACATGGGGGATGCCTGAGGCAACTAATAATGAGGGATGTTGACAGCTGCTGTGCTTTCTGTGAACGTGTGTGGTGTGCGCGCACGTGTGTAAGTCATGGGCAAACGGAGCAGGCTtgtaacaccccccccccccaccttctTTTCAAATCATTAGAAGAGATACTATATTTTTGCAGTAATGTCACATGCAGTCGTTCCCCCTAAACAAGAAGTAGCTGCCTAGTTTGTGAAAAgagatggtttaataaaaaacacacattcacatgctgCCAATCTCAAATTAGCCTGCCTGTAAACCCAGTCTctccgcgcacacacacacacacacacacacacatacacacacacacacgtctccaTGGTGATGAAGGCCTAGGTTTTATCTGGCTGGAACCCGTTTTCTATtagcgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacaagcttCAAACATTTTTGGAGCATCTTCAGGAGTGTATCCTTGAGTAACATTTTCAGCTGCTTTCATTTCTtgtagtttgttttcttccttctCGCTCTACTTCTCCAgacattaaaatatgtttatgAAAACCGAGCTGAAAAAAAATCCCCCCGCCCCCAATGTCTTTTGCCTCTTGAGTACTCAGAAAGAATCTTATAATACTAGAACGTGTGGGTGACAGGAGTCGTGGTTCTTGAATTAAAAAATGTGTACAGAGAAGATTTTGAAACAAAAATCTGTAAATAGAAAGTGTAAATAAATCCTATATATGACAAAATTGCTTTGAA

Function

GO:      GO:0005097,GO:0032851

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310039 lncRNA downstream 533899 17517663 ~ 17600185 (-) True G228522
XR_005638072.1 lncRNA downstream 731252 17402248 ~ 17402832 (-) True LOC120552976
TU309981 lncRNA downstream 858607 17272948 ~ 17275477 (-) True G228474
TU309936 lncRNA downstream 890104 17243465 ~ 17243980 (-) True G228439
TU309917 lncRNA downstream 911856 17221205 ~ 17222228 (-) True G228423
TU310251 lncRNA upstream 33834 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA upstream 34809 18305560 ~ 18311747 (-) False LOC120553191
TU310249 lncRNA upstream 92508 18363259 ~ 18369744 (-) False gramd4a
TU310257 lncRNA upstream 285302 18556053 ~ 18558509 (-) True G228684
TU310256 lncRNA upstream 287850 18558601 ~ 18559279 (-) True G228683
XM_039792281.1 mRNA downstream 156043 17830616 ~ 17978041 (-) True tafa5a
XM_039792282.1 mRNA downstream 206205 17830616 ~ 17927879 (-) False tafa5a
XM_039791141.1 mRNA downstream 550201 17576138 ~ 17583883 (-) False zbed4
XM_039791140.1 mRNA downstream 550201 17576138 ~ 17583883 (-) True zbed4
XM_039791144.1 mRNA downstream 563436 17565571 ~ 17570648 (-) True creld2
XM_039791423.1 mRNA upstream 92937 18363688 ~ 18421404 (-) False gramd4a
XM_039791425.1 mRNA upstream 92937 18363688 ~ 18421403 (-) False gramd4a
XM_039791422.1 mRNA upstream 92937 18363688 ~ 18421403 (-) True gramd4a
XM_039791424.1 mRNA upstream 92937 18363688 ~ 18421402 (-) False gramd4a
XM_039791427.1 mRNA upstream 92937 18363688 ~ 18404820 (-) False gramd4a
TU310229 other downstream 33089 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 206379 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 831886 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1310652 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 2342231 15771238 ~ 15791853 (-) True G228191
XR_005638136.1 other upstream 98924 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 1167766 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 1172481 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 1176270 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 1177313 19448064 ~ 19448146 (-) True trnal-cag_21

Expression Profile