RNA id: XM_039791349.1


Basic Information

Item Value
RNA id XM_039791349.1
length 3805
RNA type mRNA
GC content 0.46
exon number 13
gene id cerk
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18274421 ~ 18313706 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTGTTTGAAGTCCCCCTCTTCTCCTGACACCACTGGCCGACCGACCGCGACCGACACACACTTCGTAAAAGCCGGACAGCGTTAAGTTAGGCGGGCCGTAACAAAGTTGAAATGACAGTCATCGGACGACAGCGTAATAACGACAAGTCTGAGCGATATAATGGAACCGCAAGCCAGATTACTATCCGCGATTCTTTTTCACAAGCACAGGCAGGTAGAAGTTGCTCTAAACCGCAGTGTCTTGGCGTGGAAGGAAATTGAGAGGAGCAGAAAACGAGCCCCTGGCATCAGTAACAGTGCTGAAACAGCACACAGCCATGCTGTTCAGGTGTGTGAAATAGTGGCTGTCCACAAGACCAAAGATGATGACCAAGACAGCAAAGAGACCAGGAAGAGTCAGAAAAAAGCAAAGCAGCACTCCCAGCTGTATCCCCATGCATTCACAGTTTCCTACATTAGAAGAACAAGGCAGCACCAGTGGCGGTGTGGTGATGTAACTTTCCACTCTGCCAATCAGGGACTCTGCGAGCAGTGGATCCATGTTATCAATGAGCAACTGTCATTACTCACCAACCGACCAAAGAGCCTTCTGGTGTACATCAATCCCTACGGAGGAAAGCGGCGCGGGAGGCGTATTTACGAGCAGAAGGTGGCTCCACTGTTTCGCCGTGCCTGCATCTTAGCAGACGTGATTGTTACAGAGCGAGCCAATCATGCCAGGGACCACTTGAAGACGGAGGCCAATCTAGATAAATATGACGGggtggtgtgtgtgggtggagaTGGGATGTTCAGTGAGATCCTGCATGGGTTAGTCACCAGGACCCAAACAGACAATAGAGTGGACCAGAACCAACCAGATGCTGAGTTGGTGCCGTGTTCTCTACAAATAGGGATCATTCCTGCCGGGTCCACTGATTGTATCTGCTTTGCCACAGTGGGAACCAACGATCCAGTTACTTCTGCTTTACACATCATTGTGGGTGATTCCCAGCCGATGGACGTGTGTTCAGTTCACCACAATGACCTCTTTCTTAGATACTCCGTCTCATTGCTTGGCTACGGTTTCTATGGTGATATACTGACAGACAGCGAGAGGAAGAGATGGCTGGGTCCTGCTAGATATGACCTGTCAGGGGTAAAAACCTTTCTGAGTCACAACTATTACGAAGGCAGCATCTCTTTCCTCCCCGCTGAGAACAACAAGGGGGACCCCAGGGATAAGCTGCAGTGTCGATCCGGGTGCCGCATCTGTCAGCCCAAGCCCTCATCAAAGGACACACAGTGGGAGATGTCAGAGGAGAAGGAAAAGTCTGATAAAGATGGCATGGGTGGTTGGAGTGTGATCCGTGGAAAGTTTATTGCCATTAACGCGGCCAGTATGAGCTGCGCGTGTCCCCGCAGTCCACAAGGCCTGTCGCCCTCTGCTCACCTCGCCGACGGCACCACGGACCTCATCCTCGTCAGGAAGTGCTCCCGTCTGAACTTCCTCAGACACCTCCTGCGACACACCAACAAAGAAGACCAGTTTGACCACTCGTTTGTGGAGGTCCACCGGGTAAGGAAGTTTCGTTTCCAGCCGCGGCAACATGAGCTGGAGTCACTAGAGGACCTGAGTGACAGTCCAAAGAAGACAGGCTTCAGGCCCATATGCTCCGCCCAAACAACCTGCAACTACAGCACCTCCCACAGCAGCTGGACCAGCGATGGGGAGATCCTGCCTCACGCTGCCATCCAAGTCAGTGTCCATGGCCAGTTGATCAGGCTGTTTGCCCGTGGTATCGAGGAGCAGCAGCAATGTGTGTTAGAAGATCCTTGTACACTGTGGGCCCTGGAGCAAAGCACATACCAGTCAGTGGACTGAGGACTGGACATTTAGCTGctagaaaacaaaaactgagtTGCACTTGGCAAGAGTTTCCTGGAAAAATACATGCATAGCATCAGTGTTAATCCCAAACGCTGGCGACCCATCCCTCCTTAGTGTATTTGCTTAAATGCAAGAAGTCCTCTCAATGCACAAGAAAGTGtgtttaaaatttattttttttaaagctgaaaAGGCTCCCATCGCTTGGCATTCAAAGAGAAAAAATTATGGCTAAAAAGTTACATTGCAGGATCTGTTACTGAAGAGATTCAGTTATGTCCTTGCTGCCATGTGGAGCTGTTATGTGCAAAATTGCCTCATGCAGCTTTAACTAACCCCAAAATATGATATGATACAGCTGCTAGTGCCAGCGCTGCCATATTCAAACCTcagtgtcagttttttttttttttatctgtactttttgaaaaatgGAAGATTTTGAAGCTCAAAAGGATCTCAAGCTGCCAGATGAAACAGCTGAACTGGACTGAGCTGGACTCAGCCGCAACAATCTGCGGAAGGTTTTTATCCTACCATGAAGGAGAACACAAATAGGATTTCTCCCTGTATAGCAAGGAGAGACAGCCAAGGAGATACTGCTTTGTTACAAGGATGAAGAAGAAAGGCCTGTGAAGTACACCGATGAACTGAAAAGACatataatgcaaaaaaaaaaaaaaaatttaatctgTGACCCAGGTGGAAGCAGATATGAGCCAAGGGCACTAATGAAAAGAGCTGAATACACTGCTAATACACTAACAGGACCCCGGTGAATTCTGGGTAATAAGGCAAAGTGGTTGCTAAGTGATTTGGTGTGTCTCAGCACTGCTGCGGTGCACCTGTGGCTCTGAGCTTTGTTCCTCTCTTGCCGAAAACTACTGACAGTTGAATCATCATCACCTGGGATTAGCCAGAATTATACATTGTTAACTTTATTCATGATAATCCATTGAAAATGTTCATAAAGCCAGACAGACCATTGGAAAATGCAATGATAAAACCCTTTTAAAAACCACATGCACAATAATATTACGTTataagttgtgtttgtgtgtgtctgtttaggGTTAAGTGTGTTTTCCACAATCCCTTTAGGGACGTGCAATCATTGgagtgtgtgcgcgcgtgtgtgcgtgcgtatgtatgtatttgtgaaGGTGCCAATGTGATGAGTTGGCTCTATCACAATTAGCCTCATGACTGCCATTTTGCAGATGCTCTCTCACTGCAGCCAAAACAATGCTAACACAAGCACCTATTGATgagcaaagacacacacacagacgcacacttTCTTCTATTATGCTTTTTCATATATTccttgtctatgtgtgtctaacTGTGTTAATACTGACTCTGAATGTCTGTTGTAATTCACCTTCAGTTCTCACTTTTGTCAGCATAGAGTATGTTCTTTCAAAGAACTGGATGCTTTTAAATcctctgtgcacacacactgaaatgtatgcagacacacacagaaactgtGAAAGTGAGAATTGTTTTCCGGTAGGCTATGGCCAAAAAGATTTGAAAAAGCTAAAGAATTTAGCAATTCATGAGTGACAATGCAAAGAAAGTTGAACTGGAATTTGAATTCCCACTATTTGGTGTAAGGACACACACGCTAGCACGCTAGGAAAACTAGCTTAGACTCATGGCTTCCACTAGGAAAGTTAAAGATAGTTAGCTTagcttgctaacattagcactgATTACCAGACATTGCTTCTTGTTTTTGCCATTTCAATACCTGCTGAGTGAGTACCTACTGTTATGATTTCTTTGCAAAAATTAATTCTAATTTCAGTTGTACTTGAGTTTGACTTTAATCTTGCTGCTCTGCATATTCGAGTAAACAAACTGTGATTAGATACATGAATGATTTATTCTCTGAAAATGCTCAATAAAGTCCTTTAAAATGTG

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K04715 CERK; ceramide kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310030 lncRNA upstream 474171 17602206 ~ 17800250 (+) True LOC120553790
XR_005638204.1 lncRNA upstream 474174 17602194 ~ 17800247 (+) False LOC120553790
TU310024 lncRNA upstream 483501 17602206 ~ 17790920 (+) False LOC120553790
XR_005638205.1 lncRNA upstream 483982 17602192 ~ 17790439 (+) False LOC120553790
XR_005638203.1 lncRNA upstream 483982 17602193 ~ 17790439 (+) False LOC120553790
TU310094 lncRNA downstream 49544 18363250 ~ 18368382 (+) True G228571
TU310105 lncRNA downstream 115419 18429125 ~ 18465053 (+) True G228581
XR_005638161.1 lncRNA downstream 168382 18482088 ~ 18485638 (+) True LOC120553397
TU310121 lncRNA downstream 219595 18533301 ~ 18534349 (+) True G228593
TU310137 lncRNA downstream 291287 18604993 ~ 18663972 (+) True G228605
XM_039791132.1 mRNA upstream 672700 17584582 ~ 17601721 (+) True brd1a
XM_039791133.1 mRNA upstream 672700 17584584 ~ 17601721 (+) False brd1a
XM_039791136.1 mRNA upstream 675944 17584579 ~ 17598477 (+) False brd1a
XM_039791135.1 mRNA upstream 676109 17584577 ~ 17598312 (+) False brd1a
XM_039791139.1 mRNA upstream 676109 17584579 ~ 17598312 (+) False brd1a
XM_039791713.1 mRNA downstream 216430 18530136 ~ 18533114 (+) True srr
XM_039791710.1 mRNA downstream 222023 18535729 ~ 18539427 (+) True alg10
XM_039792260.1 mRNA downstream 417998 18731704 ~ 18738370 (+) True LOC120553631
XM_039792261.1 mRNA downstream 418495 18732201 ~ 18738370 (+) False LOC120553631
XM_039792259.1 mRNA downstream 509126 18822832 ~ 18854640 (+) True LOC120553630
unassigned_transcript_1495 other upstream 684258 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 1351598 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 1443178 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 1443178 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 3076591 15168604 ~ 15197830 (+) False LOC120553256
TU310117 other downstream 216459 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 1096784 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 1145377 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 1318241 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 1318241 19631947 ~ 19808412 (+) False LOC120553210

Expression Profile