RNA id: XM_039791358.1


Basic Information

Item Value
RNA id XM_039791358.1
length 3094
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120553199
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26216141 ~ 26219357 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAGGAGATTTAGTAATGGATTGCTTTCACAGGAGGATAAAAGCCAGAgctcaaagcacacacacagttcagacCTCAGCTCCTCAAGCTATGTCAACACACAGCACAATCGTTGCTTCTCTGATTGGGACCATTGCCGTCCTGTCCCTAATGAAACCGGACTGGGTGGCTGGACGAGAAGATGAACAGGAATTTAAACTGTGTGTCACATCGTTGCAGAGAATGAAAGACCTCTCTCATCAAAATCTGACAACTGTTCCCTTAAATCTTCCCAACGACACAGAGTATTTGGACATTTCTCACAACTCCATCCAAAGACTGAGCGGAGCTCCGTTTTCTGGACTGTCCCGGCTCTGTTGTCTGAAGGTGACTCACTGTGGCCTGCAGGACATCTCTCCCAGTGTGTTCGCTCACACACCAGCACTCAAAGTTCTAAATATATCTTACAATGACTTGGCTCTCATCCCTGACATTTCATTGAAACAGCTGAAAATTCTTGATTTGGCCAACAATCTGTACAGCAGCTATAGTATTCCAGCATCATTTCAGAAGCTAACGAATCTGTACGTGCTGTCATTGGGCAGCACAGCTGCTCCGTCAGTCAACCTCCATGACTTTGATCCGTTGGCGAACGTTTCTCTGCATCATCTGGTTTTGGGAGCAGGAATTGGCTGGCAAAAGTATGACACCGGAGCTCTTGCAAAACTGAAGTCTCTtcaaacattttcacttttcGCATCTTTTTGCACTGCTCCCGGGATGTTCGAGAACGTCCTCGTGGACTTGAATGCGACAAGAGCAACATCATTGAGATTCATCACTCCATTTCCAGACAAGTGCAGTGTGACCGGCGAAATGTTTAACAACCTGAGAACAATGCCATTCATACGGAATCTCACCATAGAAAACACGTGGATAAACAGCTCCTTTATGGAGGGCTTTTTGAAGAACGTGTGGCTCTCCCACCTTTATGACCTCTCGTTCGTCAACATCACTTATAATGAAGACACACCAGACGGGTTTCAGTTTCGCACCATTAATCACACGGTCAATCTTTGCTCAATTACCTTCAACGGTGTGCATCATTATCAATACAGATACCCCATAATCAACATGAGCTTAAAGGCCATCTCAAATCTGACCTATCTGAAGTTCTCCAGGAGCGGAATGAACATTATACCCTGCCATCTCTTCTCTGTCCTGCCGTCGCTGGAGACGCTTGATCTGTCAGATAACCTCTTAACGGATGCAGGCTTCTGGTGGTTTATGTGTACGCAAACCTCCGTCTTCCCCAAACTCAGGACACTGTCTTTAAGCAAGAATCGCTTCAGCAGACTTTCCTTTATCTCTGAGCAGACAAATCAGATGAAGACATTAGAGTCTCTGGACCTCAGCTTCAACTCCATCTACTTGGACCGGGACTGCTCTTGGCCTGCTCAGCTGACTGAACTAAGACTGGGAAACAACAACCTGGGCAACAGCATCTTTAAATACCTGTCCTCACACTTTGAGAGGATCGACTTGTCAAAGACGGGAATCACAGCCGTAACGCAGGAAATTCTGTCACGCTTTCCCAAGCTGACCCACCTCCAACTCAGCTTCAACAGCATCCAGGTCCTCCCTGCAGATCTCAGCGCCCCGGCGCTGCTCAGTCTCTACGTAGACCAGAATGCTATCACATCTGTATCCAGGGAGTTCTTAGCAGGACTTCCCAAACTTCAGACCCTCAAAGCTGGAAACAATCCATTCGTCTGCTCATGTGACTCTCATTGGTTCGTCACTACTCTGAACAAGTCCTTGCTCCCGGACTGGCCCTTAGATTATAAATGCAGCACCCCGCCATCTTTTGCAGGCCTGTCACTGTCCGAGTACAAAACCAGTGAACTGTCATGTGAGATGTGGCTTCAAACTGCAGTTGCTGTTCCTGTCGTAATAATGATATCTGCAGCCATTGGTCTGCTTTTCTATAAGTGCGACGGAGTGTGGTATACGAAGATGTTATGGGTGTGGATCAGGGTGAAGAGGAGAGGCAGGAAACGCTCCCACATGTTGAAGAATCTATCCTGTAGTTATCATGCATTCATCTCCTACAGTCACCAGGACTCTGGCTGGGTGGACAGCCAGCTGGTGCCCACTCTGGAAGGTGCCAGGTTTTCACTCTGCGTTCACGAGCGAGACTTCGTCCCCGGTGAGTGGATCATAGACAACATCATCAACTGTGTGGAGTCCAGCTACAAGACGCTGTTTGTCCTCTCCAAACACTTCGTCCAGAGCGAGTGGTGCAACTACGAGCTCTTCTTTGCCCAGCACAGAGCCATCAGTGTCCAGCAGGACTCTTTAGTCTTCATATTACTGGAGCCCATTCCGACTGACTCTCTGCCCAAAAAGTTCCTGAGACTTAGAAGTTTACTGAGGCAGCAGACGTACCTGGAGTGGCCAAAGGATGAACGGAAGCAGCAGGTTTTTTGGGCAAGTCTTAAATCCATGCTGCACACGGCAGACAAATCGATGGTTCTGAAGGATGTGGCTTTGGCCCTTTCAGATTCAGCACCTCTAGTTACAGACCAAGAGTAAAAGCTCAAAGGATAGcttctcatttttcttttttagatcgatctaagaaaaaaaacacccgcATGTAGACTCAAACAGTTTTTGGTTGCTGGAATTGTTACTACTGTTTATACTGGCCCTGAAGATACAGTATCTCTTCCTGCAATACCAATGTGAGTGATGGGGGTGGGCAGGGTCTGTGCAAAAATTTATTCCAAAGTTCAGCTGAGGCTAATACAAGGCTTCAGCAGTCTAATAACGATTTATCTTTTTAGTGTGAAAATGCCTCTTTGTGCATTCACAGACTGTTTCCTTGCTGTGCtgtggcagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtttgcttTGCTTTGAAAGGGATCTCTCAGCATAGCAGGATCCACTTATGTATACGTTACGTGCATTcttttctttgcatttttttttaatctttatttttgagtagctgttcttgtat

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312693 lncRNA upstream 14914 26200247 ~ 26201227 (+) True G230555
TU312661 lncRNA upstream 36125 26179543 ~ 26180016 (+) True G230525
TU312657 lncRNA upstream 41400 26173646 ~ 26174741 (+) True G230521
TU312656 lncRNA upstream 42547 26171388 ~ 26173594 (+) True G230520
TU312646 lncRNA upstream 89743 26126032 ~ 26126398 (+) True G230510
TU312701 lncRNA downstream 39568 26258925 ~ 26259131 (+) True G230563
TU312737 lncRNA downstream 163334 26382691 ~ 26383656 (+) True G230597
TU312745 lncRNA downstream 163334 26382691 ~ 26383656 (+) False G230597
TU312754 lncRNA downstream 172281 26391638 ~ 26392178 (+) True G230604
TU312750 lncRNA downstream 209077 26428434 ~ 26432122 (+) True G230600
XM_039792286.1 mRNA upstream 57228 26145907 ~ 26158913 (+) True il17ra1a
XM_039792454.1 mRNA upstream 109318 26038188 ~ 26106823 (+) True arhgef39
XM_039792399.1 mRNA upstream 403313 25810407 ~ 25812828 (+) True LOC120553706
XM_039792221.1 mRNA upstream 436526 25768737 ~ 25779615 (+) True dera
XM_039792422.1 mRNA upstream 462326 25695881 ~ 25753815 (+) True hmga2
XM_039791361.1 mRNA downstream 3432 26222789 ~ 26253935 (+) True cnot4b
XM_039791362.1 mRNA downstream 3432 26222789 ~ 26253935 (+) False cnot4b
XM_039791359.1 mRNA downstream 3433 26222790 ~ 26253935 (+) False cnot4b
XM_039792387.1 mRNA downstream 153357 26372714 ~ 26379857 (+) False mrps33
XM_039792386.1 mRNA downstream 153358 26372715 ~ 26379857 (+) False mrps33
TU312620 other upstream 169460 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1437883 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1903203 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 2328717 23887337 ~ 23887424 (+) True trnay-gua_62
TU311876 other upstream 2367517 23833031 ~ 23848624 (+) False adm2a
TU312731 other downstream 153379 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 153379 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 849720 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1383648 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1721964 27941321 ~ 27947473 (+) True G230904

Expression Profile