RNA id: XM_039791362.1


Basic Information

Item Value
RNA id XM_039791362.1
length 5702
RNA type mRNA
GC content 0.50
exon number 13
gene id cnot4b
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26222789 ~ 26253935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCTCCTCCTTCCCGTGTAAGATGGTGGTTTGTGCTGCCAGCAGGTAGCCAGCACCTTTACAAGCTGACAGAAAGGCCGGTTGGCTCCGTGACAACCGCTGACAACTGCTAGTGACGGCAGCTTGCTGTAACCGTGTCCCACACAGGCATACTTGTCCCTCAACATCCTGGAGAGGAAGCTGCAATAACACATAGGCAGGGATGTCCCGGAACCCTGGGGTGAAGGACGACCTGATGGAGTGCCCGCTGTGTATGGAGCCGTTCGAGATCGATGACGTCAACTTCTTCCCCTGCACCTGTGGATACCAGATCTGTCGCTTCTGCTGGCATCGAATCAGGACGGACGAGAACGGCCTCTGTCCCGCCTGCCGAAAGCCGTACCCAGAAGACCCGGCGGTGTACAAGCCGCTGTCGCAGGAGGAGCTGCAGAGGATAAAGACggagaagaagcagaagcagaACGAGAAGAAGCAGAAGATCACCGAGAACAGAAAGCATCTGGCCAGCGTCCGGGTGGTGCAGAGAAACCTGGTGTTTGTGGTGGGGCTGTCCCAGAGGCTGGCTGACCCTGAGGTTCTGAGGAGGCCAGAATATTTTGGCAAGTTTGGGAAGATTCACAAAGTGGTGATCAACAACAGCACATCGTACGCTGGCTCCCAGGGGCCCAGTGCCAGTGCCTATGTCACATATATACGTTCAGAAGACGCTCTCCGAGCAATCCAGTGTGTCAACAACGTAGTGGTCGACGGCAGGACGCTGAAGGCTTCTTTAGGAACTACAAAATACTGCAGTTACTTTTTAAAGAGCATGCAGTGCCCCAAACCAGACTGCATGTATCTACACGAGCTGGGGGATGAGGCTGCCAGTTTTACTAAAGAGGAGATGCAGgcAGGAAAGCATCAAGAGTATGAGCAGAAACTACTGCAAGACCTGTACAAAAGCAACCCGACCTTCCTGCAGAGCCCAGCGGTGTCAGGGGACCGGCCGAAGGCCAAAGGCAACTCCTTACAGAGCTCCAGTAAAGATGGCCTGTCGTCAGACCCCGGGAGGAGTCCTCCATCAGAGGGCTCAGACTGTGAACACTTGACCCCTACGGGGCCCCAACCTGACCCGAGCCTGGACCCTGTACCGGCCCTCTGCCCTTTCTCCTCACAGCTTGCTAGCCCCAgccacacactgacagacatcATCAGTATAGGCAACGGTGACACCTCACAACTGCTCCGTGGAGGCAGTGAGTCCCCGTCGCCCCCCCCTGGCCTCAGTAAGCCCAGCCTGCTGCTGCCCATCAGTGTCCCGGGCCACACAGCCCGCTCCCCGTTCGAGGCAGCTCCCGCGGAATCCCAGTCCCTGTTCTCGGACAACAGTAACTTCAGGCATCCCAACCCGCTGCCCAGCGGCCTGAGCGGCTTCCCCAGCTCCCCCCACAGCAACGCTGACTGGCCCACAGCGCCAGAGCCACAGAGCCTCTTCACCTCAGATACCATGCCAGTGTCGTCGTCCACAGACTGGCAGGCAGCGTTTGGCTTCGGCTCGTCCAATCAGCAGCAGGAGGACGACCTGGGCTTCGACCCGTTCGACATCACACGCCGAGCTCTGGCGGACCTCATTGAGAAGGAGCTCTCTGTTGAAGACAGCTTCGGCTCCGCACACAGAACGCTGGGGCCCCTGGGAGGGCTCCCACCCTCTCAGCACTTCCCACAGCATCAGCACCCTCGCAGGACGGACTATAGCTCCTTCAGCTTCCCCTCCCACCCTCCATCCTCGGCGTCCTCGGCATCCTGTGGCTCCTGGATGGCTTCCACCTCTTCACGCAGGAACTTTGTGCATTTGAACCACGCAGTCAGTGTAACGGCTTTCCCATCACACAGCAGCTTCTTGGACTTGACAGTGCTGCCAGGACATCACAGTACTGGGCTTGGAGGAATCCCCATCACAGAAAGCAGCAGCTGTGGAGAGAGTCTAAATGTGAAGGAGTGGCAGGACGGCCTCAGAGCGCTGTTACCCAACATCAACATCAACTTTGGAGGGCTGCCCAACTCCACATCTTCCtcattgtcatcatcatcatcctcctcctccagtgTCCAGCACGCGGGGGCCCCGGGGCTTCCTCACAGCCTCTGCTGGGACCGCACAGCCAGATGGATGGACCCAGCCATAATCACCGGGATCCCAACCTCCGCTGGCAACGGTCTGGACTCTCTTCAGGACGACAACCCTCCACACTGGCTCAAGTCCCTGCAGACGCTCACAGAAATGGACGCCCCGCCCAGCTCTGTCTCACAAAATGGCTCCTTAGGGAGCCAGCCACCCCCCCACAGAGCCGGCTGGGCACATTACCCGGCTCCTAGCAGCCAGTTCCACTCCCCGCCGCCAGGCTTCCAGACGGCCTTCAGACCCCCAACACAGACCCAGACAGACCTGCTACAGAGCGCCACCATCGACCGCCACTAGggactctcaacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtgtcgcCACCTGGAACCACACCAAATAGgcagatacagtataaaaaaCTAATaagatgatgataataataataataataataacaataataataatataatgttttaatttcttCCTCTGACCAGATCATCCACGCTTGTGTTTCGTGTCTCAGTTCGTGATTGTTGGTATGAGTAGGTCGAGGCCTGCTGCCCCAGCCACGCCTCCTAACAGACACCCAACCAGAGAGCAAAAAAGCAGCAGCCTTTACCGAATCTGAAAAAGCTTTTAGCATCGCATGGTCCCTTCCAGTCATGTACTGAAAGTGTGTTCGAGAGATGCTTTGGAATCAAATCAAGCTGCGACAGATGTGATGATTTGAAACGTGATTGAACAGGTCTCCTGATAAATCTCTTCAATCAGTCTTCACGACAGAAGCAAATTTCACAACGAGCTGCATCTGAGAATCAGACCTTTTGCTTCTTTGATCAGTAAATTGAAGGTTCAGTATGGTTAAGGTATGGCAGGGAGCAAGGAGCCGCACCGCTTTGGTATATAGTATATCAACGACAAAAGATCTGAGGGAGCGTAACACTATTATGAGCCCTACACGATCTGCAAAGTCAACCTTTGAGAGCGGCCAGGCACGATTTTATAAGAACAGAATCCGATATGTGACGGGGTTGGGGCTCGTGAGTCGTGAAAACACAGTTTTCGTCCACGCAAGTGATGCGCACGCTGACGCTTTGAGCTACGCAAGTTTTCATGTTGTTGTGTTATGGAATGTGTCGCCTAAAAATCACAACGCAAGCTGCAGTGTGAGCATGGCTGCCAAGTGTGCTAGAACATGAAACAGTAAGTGAAAGTTGGACCTATTTTGGGTTCCCTTCCGCTCAGAATAACCACGGCTGACCACACTGTTGAACACGTCCGTATGCGGCATATTCACATCCcgtcctctctttctctcatcttcCTTCTGTGCAGAAAGCACAGCAGTAAACGTTCCTGCTACTGTGGTCATGGAAACGCTCTTACTAGCTGACGTTTGTTACCCCCACCAGTGCGTAAGAGTGCACGTTCAGTATGTTCACCGGGGTTTGTGCCGGCTCAGCCAGGCGTGGTCATATGTGTTCCATGTTTCTGCCCTAACAGATGATTTAAGTGCACGTATACAGTACATTGAGAGCACAGTGTCACCTGATCAATTTGAAGTGAAGGCTCATCCTGTTTAGACCCCTcctactttcaaaataaaagctgggTCAGTAATCTCAGAGACACGGCATCTCATACTCAAGAGAGACCTGACTTTATATCAGTGGCTAGTACATCACACCTAGATCTCTGACTGAAGTGTCAAGTTTGTTTACAGGAGAAgactttgtgcaataaaaccggtatctctggttctgctgcatcaatGAACTGTCCACCATTGGATCTGACGGTATTATAGTAGCACTAAATCAGTGGAGTTCTGTTTTAATTCACAGGATCAGGAAAACAGCGTAGACTTATTAATGATCGGAAGAGTTGCAATTTATGTATGCCTGTATACTAGTCTCCACTACAGGGCGGGACCTACTTTAAAACGGACGCACCCACGCTTCTGTTCATACTAcagagtagggttgggcatcaagaaccggttccaacttggaatcgtttcagaAATGACCATTccaatggattttttttttttttattggaatagTTTGGAAAAAATTTGTTTTGAATCTGATCATCGGTCGTGTTGAATGGCTTTATTTCATGTTGAAGAAGCCCGTTAAAAGtgtaaatcaccattgaatcctcttatctgtgaaataagcatgtgacccccataaactagagatggtccgataccattttttgcttccctattctgatacctgaacttgcgtatcggctgataccgagtaccgatccgataccagcgtgtcatatattttatgttgTAACAACTgaatactactatccctgtatggacgTGACATGATTGCTATCATTGTTGTtggcctggctcaggttaaactctttgtgaaatatgaacaaacaatgatatagccatagaactttcttttattatccagtttgacaggtcataacagaaaaagaacatcAATAAACCtcttttaaagtagattttcttcggGTCCAAATTACGTGGTATCTGATCGGTTCATAAAGTCCAGTACATTCCGATACTGATACCAGCATTTTCAGGCAGCGTTGGAAGTATTTTTTATTCCCAATACTGGTATCGTAACATCTCtagtttcaactccacccctcaaagaatcagaatcgaTAAGAGCCGGAATCGAGATTGGAATCAGAAATGTTGAAATCCAAACGCTGCCCAACCCTACTACAGACGGCGTCTGGGTTGCGTGTGTCCCCCCCGCAGACATGGAGAGAGCGTTTGGGTCTGTTCCGTAGACTGCAGGTGGTGTATCGGCACGGCCGTTGCGCTGCCGATAGATATCGAGCGCGTGTTGGCCAGACCTCTGTATCAGAGGGTTGAAGCTGGACATGTGAAGGATGTGGTTCAGCACGGTCAGTGCCACTGTGTGGCGCTCCGTGCCTGGCCCGCCTCCAGACCCCTCGGCCAGTGCCCCAGCTCTCTATGACAGCTTCAAGCCTCACCTGCCTGAGCGATGAGACGTTAAGGGCACTCACTTGTGGTTTGTGCTTGTGTTATGTGGACTTGTTGAGACAGGAAAGCTCCTAGTTTAGCCTTCGTTTGTTGAGTGTGTCAGCTTTTAGATATTTAAATCGAAGTGaagagtttttttatttgtaacattttgaaaaaaaaacaaatgttttgatTGGACTGGGCTGCAGCAGGAAGCTCTCTCTCACAGGACTCTTTCCATATACGTTTTCATTTCAGAAGATTGGTTGATTGTTTAGGCGCCGTGTGCTGGGATAGTAGAGCTTCAACTCATACCACCACGAGGTACACATCACGTACCCCTGTATCATCCAAATGCTACAATCTGTGACGGTCCTGACAACTTGAATAAGTCAACAGTATTCTTGAGGATTACAAGCTAACATGTTTTCACAATGTCCAAACGTCTAAAAATGAAGCGCCGAGGTCTGGAGCACAAAACCAactaaatatgaaataaaagagCAAATATCAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312693 lncRNA upstream 21562 26200247 ~ 26201227 (+) True G230555
TU312661 lncRNA upstream 42773 26179543 ~ 26180016 (+) True G230525
TU312657 lncRNA upstream 48048 26173646 ~ 26174741 (+) True G230521
TU312656 lncRNA upstream 49195 26171388 ~ 26173594 (+) True G230520
TU312646 lncRNA upstream 96391 26126032 ~ 26126398 (+) True G230510
TU312701 lncRNA downstream 4990 26258925 ~ 26259131 (+) True G230563
TU312737 lncRNA downstream 128756 26382691 ~ 26383656 (+) True G230597
TU312745 lncRNA downstream 128756 26382691 ~ 26383656 (+) False G230597
TU312754 lncRNA downstream 137703 26391638 ~ 26392178 (+) True G230604
TU312750 lncRNA downstream 174499 26428434 ~ 26432122 (+) True G230600
XM_039791358.1 mRNA upstream 3432 26216141 ~ 26219357 (+) True LOC120553199
XM_039792286.1 mRNA upstream 63876 26145907 ~ 26158913 (+) True il17ra1a
XM_039792454.1 mRNA upstream 115966 26038188 ~ 26106823 (+) True arhgef39
XM_039792399.1 mRNA upstream 409961 25810407 ~ 25812828 (+) True LOC120553706
XM_039792221.1 mRNA upstream 443174 25768737 ~ 25779615 (+) True dera
XM_039792387.1 mRNA downstream 118779 26372714 ~ 26379857 (+) False mrps33
XM_039792386.1 mRNA downstream 118780 26372715 ~ 26379857 (+) False mrps33
XM_039792384.1 mRNA downstream 120270 26374205 ~ 26379857 (+) False mrps33
XM_039792385.1 mRNA downstream 120276 26374211 ~ 26379857 (+) False mrps33
XM_039792278.1 mRNA downstream 132880 26386815 ~ 26427044 (+) True braf
TU312620 other upstream 176108 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1444531 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1909851 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 2335365 23887337 ~ 23887424 (+) True trnay-gua_62
TU311876 other upstream 2374165 23833031 ~ 23848624 (+) False adm2a
TU312731 other downstream 118801 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 118801 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 815142 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1349070 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1687386 27941321 ~ 27947473 (+) True G230904

Expression Profile