RNA id: XM_039791364.1



Basic Information


Item Value
RNA id XM_039791364.1
length 4759
RNA type mRNA
GC content 0.44
exon number 11
gene id nampt1
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15141912 ~ 15166232 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCCTTCCCCCctacctagctagctacactacCAGGCTGGAGTCCCACGGCAGCACTGCACGCAACACACTGACTGCTGCGACTCACTCACAACCGAGGTGGGAAAGATGGAGCACAGAGACTCCGGCTTCAGCATATTGTTGGCGACCGATTCATATAAGGTAACACATTACAAACAGTACCCCCCCAACACAAGTAAAGTGTACTCGTACTTTGAGTGCCGTGAGAAGCGGACCGATCCCACCAAAAGcagaaaagtcaaatatgaCAAAACCGTCTTCTATGGCCTACAGTACATCCTCAACAAATACCTAAAAGGAAAAGTAGTGACCCCAGAGAAGATCCAGGAGGCAAAGGAGGTATACAGAGAACACTTCCAGGATGATGTTTTCAATGAGAAGGGCTGGACTTACATTTTGGAGAAATACGATGGACACCTTCCTATTGAAATCAAGGCAGTGCCAGAGGGGAGTGTCATTCCTCGAGGCAATGTTCTGTTCACAGTGGAGAGCACAGACCCTGAATGCTACTGGCTCACCAACTGGGTGGAGACCATTCTGGTTCAGATCTGGTACCCCATCACTGTGGCGACCAACTCCAGGGAGCAGAAGAAGATCCTCGCCAAGTACCTCCAGGAGACTTCTGGGAACTTGGAGGGACTAGCGTATAAACTACATGACTTTGGCTACAGGGGCGTCTCCTCACAAGAGACTGCGGGCATCGGGGCCTCCGCCCATCTGGTCAACTTCAAGGGCACGGACACGGTCGCCGGCATTGGAGTCATTAAGAAGTACTACGGCACCAAGGACCCTGTGCCAGGCTTCTCAGTGCCTGCTGCAGAGCACAGTACCATCACAGCGTGGGGGAAGGACCATGAAAAAGATGCCTTTGAGCACATCATCAAGCAGTTTCCCAACGTGCCCGTATCAATCGTCAGCGACAGCTACGACATCTACAACGCATGCGAGAAGATCTGGGGAGAAGACCTCCGGTCGCTGATAGTGGCCCGCAGTGCAGATGCCCCATTGGTTATCCGACCAGACTCAGGAAACCCGCTCGATACAGTTTTGAAGGTTTTGGAGATCCTGGGTAAGAAGTTTCCACCAGTGGAGAACTCCAAAGGTTATAAGGTTCTCCCTCCTTATATCCGAGTCATACAAGGAGACGGAGTTGATATCAACACACTGCAAGAGATAGTGGAGGGTATGAAGCAACACAAGTGGTCCATTGAGAACATTTCCTTCGGGTCCGGTGGGGCTCTGCTGCAGAAACTGACCCGAGATCTGCTCAACTGCTCCTTCAAATGCAGCTATGTGGTCACTAACGGACTAGGGGTGAATGTGTTCAAGGACCCAGTGGCGGACCCCAACAAGAGGTCCAAGAAGGGTCGCCTGTCTCTGCACCGGACACAGAGTGGCGACTTTGTCACCCTGGAGGAGGGCAAGGGCGACCTGGAGCAGTATGGCGTGGACCTGCTGCACACAGTCTTTCTGAACGGAAAGATTGTGAAGACGTACACATTTGACGAAGTCAGAGACAATGCTCAGCTCAAAGAGAGCGAGCTTAATGTGCTGCTGGACTGAGCGCAGCACTACTAAatccccaccctccaccctAACCCCAAAACAAACCCCCTCCCCTCAACCCTTCCTCCTTTTGGGCGCCGACACGACCCCAGAAAAAGGAGGCAGTGTACACTGCTAATAGATCCCTCTCCCAAAGCGTGACAACTCCCCAAAACGTTCCTAAAAACCAGAGACTCCCTTAAAATTCACAGATCTTCACCCACAGTTCCAAAACGCTGTTGTTGGTTCTCCAACAGAGTTGGGGTGGAGGAATTTGGAAATTTGCACACCACTGATGAACGGCGAACACCCCATGAGtatgaggggggaggggggggggagaaatatgagaaaatgtgtgtgaggTACAGTAAGCAATTAGGGATAGAAGTTGCGAACATGATGATAAACCGTGCGTTCACTCCCATGTGCCACTGCCCCAAATTGAACTTCGGCATATTGCACTGATAAGCTAGACATATTGCAACCTAAGAATGTGACTGGCTGCTGATAGACAATGTGTCAGCAGACTTTTCAATGCTGACACAAAAGCAAGTAAGATGATTGTGAATGAGCTCCTGGCGGCTGCATGTGGAGTGGACCCACGGTGAGTCAAAGTGAGAAAGAGGATgacagagagagaccgagaaATATGAAGCCACACCACTGACCGTGCTCCGTGAATTGTGTACAGAACTgttaaggaaaagaaaatacatgtCTGAATCTACTTTAGCTTTGTCTTTTATGTGAAGGAAGAACATGATGATAATGGTTTATAATGGTGCACCGATAACATTGACAGATAGCAGCTAAAATGTTGCTTCTACTTGGAAACAAGGTCATAAACACACTGTCATTATGGGTGATAAAGGAATTCATTTTCCCCAGTTTTCTtgtttttagttagttttggcCCAAATTATAAAAGGCCAACATCTATCAAGTACTACCTGAATATTGTGTACTCTTACTTTgccaaataaaatgttatgggTGCATCTCTGAAGGTATATAAATGATTATCTACTTGCCATTATGTTGGCCACAGAGCGTTCACATCATGAAGGTCCAATCATACCACAAAATCACAAATTCTGTTCACGGAGGGAGGATAAAACCATTCTCAAAGAGATgttttcaatatatatatatattttttattttagactaACGTGTAACAGTGGATTATATTCCTCCATTTGTTAAAATAGCAAATGAGAAAACTATGAGAAGCTAATTTTCCATTGATAATTCCAGTGTTGTCAAAGCCACAAATTTTTACAAAATTCAATTGACAAGATTAGATTTGAGTTAAAAGTTTCAGATTGGGTCTTCACGATGGTGAATACTCTGGAAACCAGTCTTTGCTGTATAAGACCAAGagttgatgtaaaaaaaaaaaaaaaaagtaaaaaaaaaaatacataacagAAATGGTCTTCACTGGAATCAAGATAATCTGTTTTATGAAAGATTATGTGGCTCCTGGGCTGAAATGTATGTTAAATGTTTGTTCTGCTctctatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgcatgtgcgcatgtgtgtgtgagttgagattttcttccttttaaaggattgtGTATTCCTTTATGCAAACGTACACTAGTTTGATCGAGGGAATAGAGAACCCTCTTCCTTTTACTTTGCCAGCCTTTAATTCTGAAGGGAGACACAAAGTAGCgagtgtgttttttctttcaggCAATGTAAAAGCAACCAAAAGGCAGAAAAGTGAGATGCAGGATCGGGAATACGTTTCTGACAGTAATGTACCCGCAATGCTTTGGCAGTTGGTGAATCGTTGCCCTTGGTATCACTGCCTTAACTCGGGAAAAGCAGGGATACTTCAACAGCTGTGTTTCTGCAAAAATTGTAAATGTGGCCAGTGATGTTTGGATTAATTGCCCGGGTATGGGATCTTGCTGATAATGCCTGTTGGAGTTCATTATCTTCCCATTCAGAGCATCCCAGTGGAGTGCCACTCCTgtttgcaggtgtgtttagtcACATTGCTGAGTTGGCCATTTCAGAGTGAAGGGATTATTATTTAGCAGAGCTTGGAGGGATTAAAGCTGGTGACATCACAGGAAACTAAATATTTGGCAGAATTCTTCAGGCGGTGCAGTGTTCCTACCACCTATTTAATTCTAATGTGTCTAATActttgatttatgaaaaaatacatacaaaattaACGACATTGCCATCAGCTTcaattgtattttgtgtgtttagtgctaattagctaatgttggcatgctaacacgctaaactaagatggtgaacatggtaaatatcatacctgctaaacatcagcatggaTTGCCATTacgagcatgttagcatggtgacattagcatttagctcaaagtatCTCACAAAGCCGCTAGCATAGCTGTAAACGGTCTTACTAACACTTTTAAAACTCCAGGTAATcctttattctttattctttgCCTGCACACCCTTTTTAGACTTTGTTATCCAATACTGgagcaacaacacaacaacagttATTTTCCAGTTATGGGGTGCATTTTAGTAAAACTCTGATTATACTATTTTGATACTGTCTCAGTTCTTGCCTCAGAGAAATATTGTTTTGTATGACAAAGGAGAGAAAATATGCCAGACATATTGCAGTAAATATCCTTATTTACAAATGATGCGGCCACACTGCCTTCTCAAGTACATACAACAACTAGTTTGACTAAAAGCAGAGAGGCAGTTTAGGGAGACGACCACTCTAGATAATACTATTATTTTTGTCAGAACAACCGTTTTTTACCAACAGAAGAATATCCAAACCTGCTTGACTGAACTGGCAGTGtgactgttttgtgtgtgtgtgtgtgtgtgtgtgtagtcctgTGTGAATGCATGGTGTGTTATGGATGAAAAAATTGTTGAAAAATTTGtgaatactttttttctttatgttgttgttgttttacttGTATGTATATGTTGGATTTCCCAAATTCTCTCCCAACACAACTGATATTTTAACGAACATAACTTGCTTTATTGTCAACAATACATTGATTAAAGATGCCACCCTGTCAGTTTGGAA

Function


GO:

id name namespace
GO:0009435 NAD biosynthetic process biological_process
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity molecular_function

KEGG:

id description
K03462 NAMPT; nicotinamide phosphoribosyltransferase

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU309355 lncRNA downstream 88627 15047327 ~ 15053285 (-) False grm8a
TU309363 lncRNA downstream 349443 14792245 ~ 14792469 (-) True G228022
TU309362 lncRNA downstream 367064 14774317 ~ 14774848 (-) True G228021
TU309361 lncRNA downstream 370945 14770498 ~ 14770967 (-) True G228020
TU309360 lncRNA downstream 371665 14769998 ~ 14770247 (-) True G228019
XR_005638141.1 lncRNA upstream 3411 15169643 ~ 15178955 (-) True LOC120553257
TU309413 lncRNA upstream 115234 15281466 ~ 15281669 (-) True G228063
TU309416 lncRNA upstream 124007 15290239 ~ 15290493 (-) True G228066
TU309417 lncRNA upstream 124642 15290874 ~ 15291223 (-) True G228067
TU309426 lncRNA upstream 154601 15320833 ~ 15345644 (-) True G228075
XM_039791363.1 mRNA downstream 1596 15128948 ~ 15140316 (-) True sypl1
XM_039792003.1 mRNA downstream 15142 15094407 ~ 15126770 (-) True atxn7l1
XM_039792005.1 mRNA downstream 15142 15096335 ~ 15126770 (-) False atxn7l1
XM_039792008.1 mRNA downstream 15169 15096335 ~ 15126743 (-) False atxn7l1
XM_039792006.1 mRNA downstream 15169 15096335 ~ 15126743 (-) False atxn7l1
XM_039791479.1 mRNA upstream 38216 15204448 ~ 15257989 (-) False ccdc146
XM_039791478.1 mRNA upstream 38216 15204448 ~ 15257988 (-) True ccdc146
XM_039792209.1 mRNA upstream 165218 15331450 ~ 15338097 (-) True LOC120553603
XM_039792280.1 mRNA upstream 180767 15346999 ~ 15356337 (-) False LOC120553643
XM_039792279.1 mRNA upstream 180767 15346999 ~ 15356337 (-) True LOC120553643
TU309380 other downstream 53583 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 80483 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1332233 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1482640 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1612134 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 605006 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1582610 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2128890 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2664440 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2664440 17830672 ~ 18100995 (-) False tafa5a

Expression Profile


XM_039791364.1 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_039791364.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039791364.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.