RNA id: XM_039791390.1


Basic Information

Item Value
RNA id XM_039791390.1
length 1407
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120553212
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19733066 ~ 19806755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGACGCAAATGTCTTCACATCACAGACACTCCAGTGGATTGTAGCAGCAGCCCCGCCGATGGTTTTGAGAGGGCGTTAAAGGTGCGGGAAGGGAGTGGGACAATTACAGGATGAGTGAGCGATACACCCAGATCGGAAGTAAAGGGGCTCTACTAGTAATGGTGCTTGTGATCAGTGTCTGGGAGATGACCGTACCAACAGAAGGGGCTACAGCGCATCATGTCCGAACAGGCACCTGCGAGGTGGTGGCGTTGCATCGCTGCTGCAACAAGAACAAAATCGAGGAGCGGTCGCAAACTGTGAAGTGCTCCTGCTTTCCCGGGCAAGTGGCCGGCACCACCAGGGCCGCCCCGTCATGTGTAGATGCCTCCATAGTGGAGCAGAAGTGGTGGTGTCAGATGCATCCGTGCCTTGACGGGGAGGAATGCAAAGTTCTTCCTGATCTGAAGGGCTGGAGCTGTGCGACAGGGAACAAGATCAAAACTACCAAGATTTCCGCGGACAAAGAGCAGCTTTGGTAACGGCAGAGGCTTCACAGCGGAGTCCAGGTGAACCAACGGTTCTGGTTTTTATCGGATCATCAAAAGAGAAGTAATGCAAAGGACCTTTTCTGTAAATAGAGACTCTCTTCTGGACTGCAATTAATCTTTGGAAAACTCTGAATGCTTCTTCTTGAACTGGATGAACATCAAGCCCTGATCATTCAGCACTTCTTTTTGAAGGACTCCATATGATTAGCCTTACCGGACGACAGGATTTATTCTGCGACATTGTCCTGCTTGTAGTGGAAACCAACGGTGAACCTTGCCTATGTGTTAATTTCTAGACTAATATGTCCTTTACGGAGGGATTTGCATCACAGGTTGACCAGGGTGAACAGCAGGTCAGTTTGCTGTAAGCATCGCAAATATTCAATACAAAATGTGATTTTCTTTAATCAGTCAATTGTGGCTTTCTTCTCAAAAACAATGTGTAGTTCCAAAGGTTCAGATATAGATGAAAATATGTGGCTGAGCGGCAGATATTCAGGGCGATTTTCAAAGAAATGCACAACCAAATCTCGTAAACCTACTACACATTGTGCAGACTGCTGAACTGAACCAGCGCTGCAAAAAGTTCAAACTGGTCAAACTATCAGTCGTTATCGGACAGAAAGTTACATCACTCTGCCATTTCCAGTCGCTTCTGCCAGATTTTGGTTTTGTGTCACAAGCTCTGGAGCTCAGATTCTAGACAACAGCAGtgtacattaaaacacacagcatCTGGTCACTGACAACAATGTTCCCAAAACGGTTTTTCGACTCAAAGTATGATTTGCTGTTCACCTTTCAGTAGGTATTGCTGACACTTCCTTTGTCTGTGTAAGTGATGACATCAGTAATAAACTATTGTTGTGTAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638134.1 lncRNA downstream 14654 19717222 ~ 19718412 (-) True LOC120553214
TU310533 lncRNA downstream 163707 19550617 ~ 19569359 (-) True G228885
TU310530 lncRNA downstream 218632 19514103 ~ 19514434 (-) True G228882
TU310528 lncRNA downstream 225506 19506683 ~ 19507560 (-) True G228881
TU310527 lncRNA downstream 233456 19499238 ~ 19499610 (-) True G228880
TU310618 lncRNA upstream 46209 19852964 ~ 19905943 (-) True G228946
TU310627 lncRNA upstream 51348 19858103 ~ 19858863 (-) True G228949
TU310623 lncRNA upstream 70342 19877097 ~ 19882079 (-) True G228947
TU310720 lncRNA upstream 494347 20301102 ~ 20301438 (-) False cdk17
TU310764 lncRNA upstream 548881 20355636 ~ 20357563 (-) True G229062
XM_039792228.1 mRNA downstream 164009 19546626 ~ 19569057 (-) True lrig3
XM_039791749.1 mRNA downstream 228760 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA downstream 229142 19495419 ~ 19503924 (-) True rpap3
XM_039791748.1 mRNA downstream 229147 19495419 ~ 19503919 (-) False rpap3
XM_039791045.1 mRNA downstream 304637 19418241 ~ 19428429 (-) False LOC120553005
XM_039791379.1 mRNA upstream 59 19806814 ~ 19839350 (-) True etv6
XM_039791380.1 mRNA upstream 1284 19808039 ~ 19839349 (-) False etv6
XM_039791378.1 mRNA upstream 1284 19808039 ~ 19839349 (-) False etv6
XM_039791791.1 mRNA upstream 176724 19983479 ~ 20000522 (-) True LOC120553419
XM_039792445.1 mRNA upstream 260140 20066895 ~ 20122393 (-) True rerg
unassigned_transcript_1502 other downstream 280038 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 280516 19452469 ~ 19452550 (-) True trnal-cag_23
unassigned_transcript_1500 other downstream 280993 19451988 ~ 19452073 (-) True trnal-cag_22
unassigned_transcript_1499 other downstream 284920 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1498 other downstream 285963 19447021 ~ 19447103 (-) True trnal-cag_20
TU310602 other upstream 4490 19811245 ~ 19839302 (-) False etv6
TU310603 other upstream 4490 19811245 ~ 19839302 (-) False etv6
TU310704 other upstream 260281 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 1150902 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 1256936 21063691 ~ 21145533 (-) False ptprz1b

Expression Profile