RNA id: XM_039791420.1


Basic Information

Item Value
RNA id XM_039791420.1
length 3996
RNA type mRNA
GC content 0.52
exon number 12
gene id vezt
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7240852 ~ 7255885 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATTAGCTAGCTACTAGATTAGGAGAGAGGTGGGGTGGGGATGACCAGATCCAATGCGTCGgttctggagaaaaaaaaaaaaaatccttgacACACACGTAGCTACGTCTGGATGGTGACAACATGAGCTAATGCGACTTCGTGTGACAATGCATaACTCCCCTCTTTTCCAGTACCTGCATGATCTAGGGCACACAGACTTTGAGGCATGTCCAACAGCGTCACAGGACGACGAATATGGTGGACAAGAGGGAGACCTCACCACTCCTGACGAAGATCCACGGAAAACTTCAGGAGGACGCTTCTGGAGACTGGCTGAAGCGTTGTGGAGATGGAGCCCGATTCACCAGGCGGCTGCATCTCGTAAGATGGGCCAGCAGCTGGACTGTGTCTTCGGCCAGTACTCCGTGAAGTGCATTCTGGACCAGGACGTGCTGCTGCAGGAGGATGTGGAGCTGATCGAGCTGTTAGACCCGAGTCTGCTCACCCTCGGCTCGTCCGTCTCTGGCTCATCCAGCCGAGCGAGCACACTGCCCAGACCAAGCCTCATAGCCAGGCCCTCCCTATGGGACGTGGCGGGGCTGGTCGGCCTGGCTGCGGTGCTGCTGGGTCTCTGCTCTGAGGGCCTGTGGTCGCTGGCGGCAGCGCCGTGGGGCCTGGCACTGCTGGGCTGGCTTGGACTGAGGGGAGTCATGCTGTGGAGAATGGGCCGCATGCAGAGAGCCGTCCACACACGGGCCACGCAGCTCCAGACCCTGGTCCACAACAGCAAGACTCTGACCGGGCTGTCTCGTAAAGCCCTGCGCCTGGTGCAGGAGACGGAGGTCATCTCCAGAGGGTTCACCCTTTTGCTCGACAGGGTGAGTGCGGCCAACTCCTTTAGCAGGGCGGGGCCGGGGGCGGTGCCACGAGGCCAGCAGCTGATGGGACTGAGGAAGGCCCTGTACCGGGCGCTCCGGACGGCCTTCAGAGCGTCTCGTAGAGCCACCTGTCACATGCTCAAGGCgTTCCCTCTGAACTCTGAGATCGATAATGTGACCAACTATGTGTCTGCGGTGCCTCTGAAGGAGCTGGGACTCGGCCTGGGGATTGAGCACCTGGGTGACGAGCAGGCTCAGGAGCTGACCGATGACTACAGCCTGCCTGCCCTGAAGATGCTGTTCCAGCTGTGGGTGGGACAAAGCTCTGAATGTTTCCGTCGACTGGCTCTTCTCCTGTCACACCGAAGAATAGAGGAGCCAGAAGAGGGCGTACTCAACGAAGACAcctccccaccccctcccccgcTGCACCGCTCCATCGCCGCTGTGACCGAGCCCCTCCATCACGCTCTGGGCAGCTGCCTCTGCGAAGTGCAGCGCAGCTACGACTTCCACCGACACTTTGAGACCCATCTGAGGACGACGGGCTCTGACAGGACGGGGAGAGCAAGGGAGAAATGCCGGGAGCTCAACACCCTGCACACCTCCATCCGAAGCCTGCAGCTGCACCTCAAGGCCCTGCTCAGCGAGATGATCATCCTGGAGGACGACCTGGAGAAACTGATGGTGTCCAAGGAACTGACGGAGTTGACGTTTGAGGGCTACCAGGCCCTCAGTGACCGGCTGCACCAGCTGCAGCCTCACATGCAGGCCAGCACCGGCTGCTGGGAGGACACCATCTGCCAGGTGGAGCGCATGCTGAGACGGGCCAACGCCTGTCCAGGTTATGCTGAGGGTCTGGAGCAGTGTGGTACCCCTGTAACCGAGattcctgctcctcctccatcctACCCGTTGATCCTGGACAGAGACCCTGTGCCAGAAGAGCTGGAGTGGGAGGCCTACGTGTCCGACTCGGACTCTGACGGCGAAGGCAGAGGGTCTTGGTCTGACATCTTGTCACCGGAGGAACGGGAGCGGCAGCGCCGGGAGAGGGAGGAGTCCCGTCGCGTCCTGTCAGAGCTCAAAGCTGTGCTGGGCTTCCGTGCGTCAGAGGgggagaggatgaagaggaagcaGCTGCTTTTCAACGACCAAGCTGCTGTGACACCTTCAGCTCACGGCGAGAGTTCAGATCTTGCCACAAAGCCATCAGACGCTCCGACCTCCCTGGGATCTATAGAAAGTGGCGACGAAGAAGGAAACCACTTTTCAGAGTGCTCTGTAGGAAACAAAGGGGAGGAAGGGGAAGGAAAAGATGGCAGGGTGAGGCCTGACCCCTCCGCAGAGCCAGTGACGGAGTTCAGCTGTGGCTtggaggagaaggaaggggaTTTGGGAGGAACTTCGGTGTGtaccagaggaggaggaggagcgtcTGAGCTACACCAATACGACGGTGTCCTGGAGGAGGGCCAGAACGGTCTGGACTGCTTCCTGAAGCCCAAAGTCCCTGCTGTCACCGTGATGGACAGACTGACGGAGCTCCACGGCCCAGAGGCTCTCAGCTTCAGCTCCGCCCTCGCCGCTCAGGTGGCGGCACGCTCGCACTCGCTCATCGCCATGGAGGAGCAGACGTtcggtgatgatgatgatgaggaggatgaagaggagagcGACAGTCAAACCCTTGAGAAGGACTTAAATTAAAACCCCCCGCTGCTTTAACCTAGCACTGAGCAGAGACTGTATTTATGTCTGATTGTCTGGTTGTCTTTTATCGATGGGTCTGTGTTACATCTTAACCGTTTCTTGTGTGGAGGCATTTCAAATTTTCGCCACTCTCTCTATACCCATCCGTCCATTTTACTGTACATTACCCACAATTCTTACTGCTCTTTTGCTGTTAAAACTCAGGTACCAGAACCACTAAAACATGACCTTTATAGTGTTAAGATCGGAAGACCAAAATGTCTGCAGTTACCTGGTAACATCAACACAGTGTATATTGTTCACAGTCATACAGTGTGTCTGGAAACGAAGATTGTAGGAAACGTTGGCTCCATACATAAaaaagaagtgtttttttttgttcttttgagAGAAAAAGATTGGATTTAATTGCAGTTTTTTAAAACACTCCAATCTGAGTTACTTTTAGGAAGTTGTGCGCTGGGGGAGTTGAAAGGTTAAGAGCAATATTCTGAGATACAATGGTACTTCTCTGTGTTCAGACAGAAGGCGAAGTTAGATGCAAACAGCTGTCTGCCTgattttaaaaacgtttcatCTCATGCGACAAATTTCAAGCTTACGTGTATCTCGGAACTTTATGAAACGTCcagaaataaaaggaaagagagtatgccacaatgtaaaaatactctgttacaagtaacaGTCTTGCATTCAGAATTCAACTGAACCTAAATATTGTCAACAAAATGTAGTAAGGTGTAAAAATTAAAGTACTCGTAAAGCATAATAGACCATTTCAGAGTATTTATAAAACAAAGttaagatatttttattttttaggatTTCCGGtgctcaaatttgtacttaggTACAATACTTGGGTAAATGTTGTTTCCACTACTGCAGTTAGTATATTGAATGTTtcaggtaaaaaataaaaaatacagtccAGAAGTCAAGTTCATGCGAATGACGCAAGGGGAAAATATGCTTCACTTTCTATCCGAACACACCTGAAGAAGAAGGTTGAACTCGGCTGACTGAGTCAGACAGTTATATGCACACACAATGTGTGAGAGGGAGCTCTGCAAGAAGAGGCAGTAGAATGCGATCTTTACTATCAGCGCTTTATTTTTGTCTGGCCCTTTCTGCGATCCATCTCCCTACTTACTGTCAGACTGGACACGATGGTGGTCGGACACATAGCAGACGTTCACAATCCTATTTCGAATGCAACACTATTGTATCTAAGAACAGTTCATGAAGACTGAAACAGTCCCATTTTTCAGCATCTGTGTTTACAGGGGCACACTGGGAGGAAAGATCAGAAAGACTTGTTTATGACTCTACACTTTATGGACTGAACTGTGTGCTGCTGTGaggttttttaaatcaaatagcTGTACGGGTATAGTAATAAAGGTTGATTTTCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306949 lncRNA upstream 24963 7213392 ~ 7216386 (+) True G226306
TU306925 lncRNA upstream 83462 7157490 ~ 7157887 (+) True G226292
TU306694 lncRNA upstream 554724 6682718 ~ 6686625 (+) False prkcq
XR_005638192.1 lncRNA upstream 740289 6429094 ~ 6501060 (+) True LOC120553621
XR_005638108.1 lncRNA upstream 951450 6183044 ~ 6289899 (+) True LOC120553126
TU306966 lncRNA downstream 11624 7267509 ~ 7268219 (+) False G226316
TU306965 lncRNA downstream 11942 7267827 ~ 7268758 (+) True G226316
TU306967 lncRNA downstream 13219 7269104 ~ 7270753 (+) True G226317
TU306968 lncRNA downstream 15432 7271317 ~ 7271707 (+) True G226318
TU306969 lncRNA downstream 16192 7272077 ~ 7272316 (+) True G226319
XM_039792095.1 mRNA upstream 97344 7115962 ~ 7144005 (+) True lamb1b
XM_039792272.1 mRNA upstream 141345 7089340 ~ 7100004 (+) True dclre1c
XM_039791779.1 mRNA upstream 168346 7051855 ~ 7073003 (+) True cd9b
XM_039791780.1 mRNA upstream 168346 7059285 ~ 7073003 (+) False cd9b
XM_039791513.1 mRNA upstream 229071 7002979 ~ 7012278 (+) False LOC120553268
XM_039791597.1 mRNA downstream 1385 7257270 ~ 7267450 (+) True metap2a
XM_039791101.1 mRNA downstream 62632 7318517 ~ 7321189 (+) True snrpf
XM_039791041.1 mRNA downstream 67185 7323070 ~ 7330021 (+) False amdhd1
XM_039792444.1 mRNA downstream 107440 7363325 ~ 7368216 (+) True klhl42
XM_039792100.1 mRNA downstream 114557 7370442 ~ 7400399 (+) True nrip2
unassigned_transcript_1480 other upstream 94009 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638175.1 other upstream 1868146 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1868146 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1868146 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 2583380 4657444 ~ 4657969 (+) True G225894
TU307013 other downstream 62655 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 67185 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 140609 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1170806 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1878709 9134594 ~ 9173220 (+) True lhfpl3

Expression Profile