RNA id: XM_039791432.1


Basic Information

Item Value
RNA id XM_039791432.1
length 6190
RNA type mRNA
GC content 0.44
exon number 40
gene id cacna2d4a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13358887 ~ 13443536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTATGGTATAAACTGGTCCCGGAGAGCAGGAAGAGATACactagagagaaagaggaagtccCACTATCCCTCCATTACTCAATCCATCTAACTCGAAGCGTAATCGTGTCCCAGTGCTGGATGACTTTGGTTTGGATCCACCGGGATGTGAGGTCAGAAATAATTCAGGAAAAGGACGGAAGAAAAACCTGTTTTTTGGGAATATGTGTGCGTATCCTGCTTTGGAATACCTATCTGTCTGATAAAAAGGACTGAAGACAAAAGTTTACCAGGACGACCCAAgtctttcatctctctctccctttttaaCCGGCACCCTGTAGGGGTTCATGGAGGAGAGAACCGGATAATGAGGGCAGTAGAAATAGGATTAAGAGGTGTAGAGAGGGAGGTGTAGGAACATGGCAAAGCTCCGTTGTGACTCCTGGTGCGCAGAAGTGACCTTTGACACTGGAGACAAGAGCTTTCGAGTCTCTATTGTGTGCCAGTGTAACCTGCTGAGCTGACATCAAATCTTCAATCACACACTTCTTTTTGTTATCAGTCATATTTGAACTTTCTTTCCAGACCCACTCTTCTCAAAGGGAATGGTTTCAAAGCTTTGACCACATGACATAGTGAGTAATCTTTTGTGTCATTCTGTCTGTTATGATTTGGGGAAGTATTTTAATCTTCCTGCAACCCACTTTGGGGCTCctgcttgtgtttcttttgAATTAGCACCCTGCGTTTTTGCACAGCACACAGGATTGTTTCAATCTTTTggctcacagaaaaaaaagcagctaTCAAGTCTTTCCATTCAGAGACTCAGGCTTCTCAGCATCATTCTTGTGACTGCTTTTAGGACGATCTGTTGTTGGATGTCGCATGTGAGCTTTCTGGATCCTTTGCTTTTCCTGAGCAGGCCTCGGACTGTCACAGATTCTCCACATGTCACTATTTTCGACTGCTCTGTTACAAAGTGTGCCTGTCTTCAGGTCTCTGGAGAGTATCAAGATTTGAACTGTGCGTGAATGTCTTTGAGAAAACTGGATTGTATTGGATCTTTTTGGGATTTTTGTAACAATTACCAGCGTGCAACAATTGCTGGACTGATGCAGATTGCGGCAGCTGCAGGGATGAACCGCTGGAGCTGGGGAACCACTGGCAATGCCAGTAAATCGGACAAAAGTGGGCCGCACAGAGGGAGGCTGATGATGCTGCTGTGGATTATCCTCTCCAGCTCAGTGTGCCTGATGGTCGATGGCCAGATGAAGCTTTCACCAGAAACGGTGCAGCAGTGGGCTGTATCCTTTGGTAAAGAGATGGCCGCCCTGTCCACCAGATACTCTGGAGCTAAACTGCTGCAGAAGAAATACAAGGATGTCGAGGGTATGGTGAAGATAGAGGAGGTGGACGGAGAGGAGCTAGTAAAAAAGTTTGctgaggagatggaggagatgCTTGGGAGGAAGATGAAATCTGTGAAGAGGTTAGCGGAAGCAGCAGAGGATGCTGACCTTTACCACGAGTACAATGAAACACTGGAGTTTGAATACTTTAACTCCCTGCTGATCAACTCGGTGGATGAAGATGGGAATTCAGTGTCGCTGGGAGGAGAATTCCCTCTGGAGAAAAATGAACACTTCGATAAACTGCCAGTCAACACACAACTGAGTAACATACAAGTCCCTACTAATGTTTACAACAGAGaTCCAGCTATTCTGAATGGAGCCTATATGTCTGAGGCTCTGAATGACGTGTTCATTGATAACTTCCAGAAAGATCCAACTCTCACCTGGCAGTACTTTGGCAGCGCTACAGGCTTCTTCAGACTGTACCCAGGGATCCAGTGGATTCCAGATGAAAATGGTGTGGTCACCTTTGATTGCAGAAATAGAAACTGGTATATCCAGGCAGCCACTTCGCCTAAAGATGTGGTAATCGTGGTGGATGTCAGTGGCAGTATGAAGGGACTCAGATTGACCATAGCCAAACACACCATCAATACAATCCTGGACACACTGGGAGAAAATGACTTTGTTAACATAATAGCtTACAGTGACTATGTTCGCTACGTGGAGCCCTGCTTCAAGGGCACGCTGGTACAAGCTGATCTGGATAACAGAGAGcaTTTCAAGCTATTGATTGAAGAGCTTCATGTCAAAGGCGAGGGCAAAGTGAAAAAGGCAATGAAGGAGTCTTTCAAGATCCTCAACGAGgcttCAGCGCAGGGCCAGGGCAGCCTATGTAACCAAGCCATCATGCTGATAACGGACGGAGCAATGGAGGACTTCCAGGATGTTTTTGAAGAGTTCAACTGGCCAGAACGACGGGTTCGAGTGTTCACCTATCTGATTGGACGAGAGGTGACATTTGCTGAAAATGTTAAATGGATTGCCTGCAACAACAAGGGGTACTACACACACGTCTCCACACTGGCTGACGTCCAGGAAAACGTTATGGAGTACCTCCATGTTCTGAGCCGGCCAATGGTCATTAACCACGATCACGACATCATCTGGACTGAGGCTTATATGGACACTGTGTTACCAAGCACAGCAAAGCTGTTCAACAGTCAGGCCCAAAGCCTGCTCCTGATGACCTCGGTAGCCATGCCTGTGTTCAgcaagaaaaaagagactTTGTCTCATGGGATTCTGTTGGGAGTGGTAGGAACTGATGTGGCCTTGAAAGAACTGATGAGATTAGTTTCAAGATACAAGCTGGGTGTCCATGGTTACGGCTACCTTTTAACCAACAACGGCTACATCCTGTCCCACCCTGACCTACGACCTCTGTATAAAGAGGGGAAGAAGCTAAAGCCAAAACCCAACTATAACAGTGTTGATCTGGCAGAGGTGGAATGGGAAGACACCGAGGAGAAACTGAGGACTGCCATGGTTAAAGGAGAAACTGGAACgatgtctttagatgtgagaacTTCAGTGGATAAAGGAaCGAGAGTAATGTTCCTGAAGAATGATTACTTCTACACTGTCATCAACGAGACACCATTTAGTCTGGGTATAGTGTTGACTAGAGGATATGGACAGTATATCTTCAGTGGAAACGTCTCTGTTGAGGAGGGTCTCCATGACTTAATGGCTCCAGACCTGACCATAGCCAATGAATGGACCTACTGTGAGACAGACATTGACCCGGCCCACCGTAAGCTGAGCCAGCTGCAGGCTGTGGTGCGATACCTCACTGGTAAAGAACCAGATCTGGAGTGTGATGGGAAGTTGTTGCAACAAACTCTTTTCGATGCTGTGGTCACAGCTCCTATGGAAGCCTACTGGACCGCTCTCATGCTCAACACATCTGGtaTGGAAGAGGGGGTAGAAACAGCATTCTTGGGGACCCGATCAGGCCTGTTGAGATTCCAGAGATACGCTGGTATGGAGAAAAGAACTGCCAAGTCTTTCCTGACCTCCACAGACAAGGAGAATATGTTTACATTGGACCATTTCCCAGTGTGGTATCGCAGAGCATCCGAGTACCCAGCTGGACAGTTTCTGTACTACATGCCCAGACAGGAAACTAGAGCAGGGAGGATCGTGATTGCTGCTACTGCTGTCACTGTTACGGTGGGCAAGAAAACTGCCATCGCTGGAGccatCGGTGTCCAGATGACTCTGGATGTGATGGAGTCCAAATTCTGGGCCATTGCAGCACAGCCAAATGACACAGATTGCTCTGATACTGATGGAGTTTGTCCTCTTCGGTGTGACAGCTTTgATATTGCGTGCTACGTGATTGACAATAATGGCTTTGTCCTAATTTCTAAACAGCGCAGTGATGCGGGAAGATTCTTTGGCGAGGTTGACGGATCTGTGATGACAACGCTAATCAGAATGGGCATGTTTAAAAGGGTGTCCTTGTTCGACTACCAGGCCATGTGTAAGATGAACTCGCACTCTGTCAGCAGCGCCCGTCCACTTCTCAGTCCGTTCTATGGTTTGGCTTCAGCCCTCAAGTGGTTCCTCTCCAACTTCCTACTGTTTCTCCTGGAGTTTAATATCTGTGGCTTCTGGCACATGGAGCATTTCGCTGACGCCTCAGCTCATAAGAAAAGAGGGGACATCCTGCAGCCGTGTGACACCGAGTACCCCAGCTTCGTCTACGAGCCATCAGTCAAAGAGACCAACAGCATTATTAAGTGTGGACGCTGCCAGAAgatgTTTGTGGTGCAACAGATACCTGAGAGCAACCTGTTGATGTTGGTGGTGCAGGCAGACTGTGACTGCTCCAGACAGTACCCACCCCTCACCATGCAGCCCAAAGAAGTGAAATATAATGCCTCAGTGAAGTGTGACAGGATGAGGTCCCAGAAGATTCGCAGACGCCCCGAGTCCTGCCACGCCTACCACCCCCAGGAGAACGCCAATGACTGTGGAGGAGCTTCTATTatatctctctctgcctctctctttctcacctgCCTCTCCTTCTTGGCACTTGTCTCCTGATGATGGACAACGTTGCTGTTTCACCCATTCTCATATAAAGGAGGAGATTGGAATGAATCAAGAGATGTGTTTGGACACTGGACACCTCAAGTGGATTTTTAAAAAACTAATTCTGAACATTTTGTTAATGACAACCACAAACCTTGTCTCTACTGACGGACcattgatgtggtttttgaGCATTTGTTACTCCTGCAAATTATTACACCTGAACTGAAAACTGCAAAGAAGGCAAGTGAATGGGCTGTTGTTGCCATGGATACTTTTCCCATTAGTTGCTTTCTCATACATCATTttgcatctcaaaatgaaaaggGACTAAAGAGATGCAGGTGGTAGCTATGACGTGCATTGaaatggggtgggggggggttcaTGTTCCACTGAACTAAATAttgcagacacacatgcatattgtATATGCAGCTGCAAGCATGCACACCTCGAATACTTTATCATTCTGAATGCTTCATCTACCAACTATCATATGTGCTTTTTTAAACGTTGAATGAGATAAGGGAGAGAAGGGCTACAGCAATATATGGTAAACATTGTTATGTAACATTAGTGTTGCTGCTGACAGTCGTGTTGACCAAGGGTGTTTGCGATATGAGTTTCTCTGAATCTCCTGCAAATCTCAAAGGGTGATGGCTAAGTGCCAAGAACGTATTTGCAGTGGGAgctgataaaaatgtaataaagatAATCAAAGATCAGAATGAGAAGCTCCTTCACTATCTCgtttttttgagtttttacTTGGATTACatcacaaaaatatttatttctgtgacatatctttttaaaaatgtctgcctttctctgtgtctttctgtgtgtttgtacatactgtaatgtAATTACATGTATGTAATTATGTTTGGCTGGACATCACTGTGGAAATTGGAGCTCTCACAGGATGTAGATGTACAATCAACATGGATAACACAATGATGGATTCAGACTGTGTTTAGATAAGTTGTTATCATTGTATTGGAAAATACAATTGCATGGTTTCAAAGCAAatctagtaaaaaaaaaagaatacccTGCAAAAGATGCAGTTTTACCAAAACAAATGTTTCTGGTATTCATGTTTATGGCAGTGACTATGCATTTGTTGGACTGTGGTATTTGGATACTTCACTTGGGCCCCAAGGTCATGTAACTGCTACTTATTACTTGGCGCTTGGCATGAATAACATCATaattttataaattcatgataaaaaagcaaagataaAATGGGAACAAGATTGTCATATAGAAGAAAACTGTTTGGAAATGTCATATATGTAATTGCAATATAAATTAACAGTGTAAATCTAATTGCATAGGgtatttttgtatttccttGTGTTTCATATCATGTCTGCAATCTTGAACTTCAGCATTTCAATGTATTTGGGCTGTGAGCGTccctgtagttttttttaatggtattTCTGAATCATCTCACAAGCATGTTTTTCAGTTGAGCTTACTCTGATGACAAAATTGCCTGAGAATTTACCTGTTTGTGTAATAGACTCAGTTACatattgtgtgtgagtgtgcatcaTCACAGTATGTTGTGTCTTGTTGAGATTATATGAgtaattttattaatttgtcTCAGTTTTGTTTGTAATTTCCACTATACAATATTCTGTATGTTGTATGGTTGACATGTGTCCCAATTGTATGTTGACTGACTGATGTCATGATTTGAACAAAGTAAATTCAATTATCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308615 lncRNA upstream 285860 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 318190 12987713 ~ 13043018 (+) True G227499
TU308581 lncRNA upstream 451068 12846814 ~ 12910140 (+) False plxna4
TU308405 lncRNA upstream 1117453 12243534 ~ 12243755 (+) True G227363
TU308377 lncRNA upstream 1368256 11990100 ~ 11992952 (+) True G227338
TU308813 lncRNA downstream 49865 13493401 ~ 13493861 (+) True G227639
TU308823 lncRNA downstream 72946 13516482 ~ 13531547 (+) True G227646
TU308840 lncRNA downstream 110714 13554250 ~ 13554826 (+) True G227662
TU308978 lncRNA downstream 513161 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 524007 13967543 ~ 13969687 (+) True G227736
XM_039791503.1 mRNA upstream 7368 13339059 ~ 13353840 (+) True dcp1b
XM_039791505.1 mRNA upstream 235393 13121512 ~ 13125815 (+) True LOC120553267
XM_039791506.1 mRNA upstream 235393 13121512 ~ 13125815 (+) False LOC120553267
XM_039792308.1 mRNA upstream 280319 13077157 ~ 13080889 (+) False klhdc10
XM_039791761.1 mRNA downstream 1048 13444584 ~ 13474258 (+) True cpsf6
XM_039791762.1 mRNA downstream 1048 13444584 ~ 13474258 (+) False cpsf6
XM_039791764.1 mRNA downstream 1048 13444584 ~ 13474258 (+) False cpsf6
XM_039791765.1 mRNA downstream 1048 13444584 ~ 13474258 (+) False cpsf6
XM_039791763.1 mRNA downstream 1048 13444584 ~ 13474258 (+) False cpsf6
XR_005638103.1 other upstream 340948 13005339 ~ 13020260 (+) False nrf1
TU308397 other upstream 1234663 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 1603891 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 2248303 11102836 ~ 11112905 (+) False G227216
TU308693 other downstream 31609 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 231288 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 325519 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 326530 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1488 other downstream 331451 13774987 ~ 13775059 (+) True trnak-cuu_12

Expression Profile