RNA id: XM_039791438.1


Basic Information

Item Value
RNA id XM_039791438.1
length 3733
RNA type mRNA
GC content 0.53
exon number 28
gene id ppp1r12a
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8343006 ~ 8402858 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCCTCCCTTCCCACGCCCCAGTGCGCTGTGGGATAGTGGCACTATAAAGTATATCCTCTCTCGGAGAAAGATAAGAAGCCCGAGACAGGAGGGGGATGAAGATGGCGGACGCCAAGCAGAAGAGGAATGAGCAGTTAAAGCGATGGCTGGGCTCGGAAACGGACCAGGAGCCTCCTGTtctgaaaaagaagaagacgaaGGTGAAGTTCGATGATGGCGCCGTGTTTCTGGCCGCTTGCTCAAGCGGCGATACCGAGGAGGTGCTCCGAATGCTTGACCGGGGCGCTGACATCAACTACGCCAATGTAGACGGTCTCACCGCCCTCCACCAGgcatGTATAGATGACAATGTTGACATGGTGACTTTCCTGGTGGAGCATGGAGCCAGCATCAACCAGCCTGACAATGAGGGCTGGATCCCCCTCCATGCTGCAGCCTCCTGTGGATACCTAGACATAGCAGAgtaTCTCATAAGCCAGGGTGCCAGTGTAGGAGTTGTGAACAGTGAGGGCGAGACACCTCTGGACATTGCTGAAGAGGAGGCAATGGAGGAGCTCCTGCAGAATGAGATCAACAGACAAGGGGTGGACATCGAGGCAGCCCGGAAGGAGGAGGAGCGGGTCATGCTGAGGGACGCCCGGCAGTGGCTCAACAGCGGCCAGATCCAAGACAGCCGGCACACAAAGTCTGGCGGAACGGCACTCCATGTAGCTGCTGCGAAAGGATACGTCGAGGTTTTAAAGCTTTTAATCCAAACAGGGTATGATGTAAATATTAAAGACTATGATGGCTGGACTCCTCTCGCGGCAGCACACTGGGGCAAAGAGGAGGCATGTAGGATACTGGTGGAGAATCAATGTGATATGGACCTCATTAATAAAATGGGCCAGACAGCTCTTGATGTAGCAGACGAAGATGTTCTGGGACACTTAGAAGAactacaaaagaaacaaaatctgCTGATAGGTGAGAAGACATCTCCTTTGATTGTAACCACAACAACCACTGGGGATAACAACCAACCACTGAAACCAATCAAGAGCAAAGAAACGTTGCTTCTGGAGCCAGAAAAGAGCGCCCCGTGCATTGAGACCATAGAACCAGAGAAGGTGGATGAAGTAGAGGAGGGCAAGAAGGACGAATCGAGCTGCTCCAGTGAGGAAGAGGACGACGAAGATTCAGAGTCAGAGACTGAAGCagACAAGAGCAAGCCTTCAGCATCGGTGAGCAACAGCACGACGCCAGCCCCAACCAGCATCGCCGTGTCACCTCCAAGTAGCCCAACCAACCAGGTGACAACCCCTACTTCACCGGTTAAGAAGGCCATTCAGCCTGCTGGAAAGGTCTCAACTAAAGTGGACGAGGATAGGAAGGACGAGGATAGGAAGGACGAGTCTCCAGCGTCGTGGCGGCTGGGTTTGAGGAAGACGGGCAGTTACGGGGCGCTAGCGGAGATCACAGCCACCAAGGAAGCTCAGAGGGAGAAGGACACGACTGGGGTTATGCGCTCAGCCTCGAGCCCTCGCCTCTCCTCTTCTCTagacaacaaagacaaagagaagGAAAAGGATAAAGGAACTCGACTTGCCTACGTGGCCCCCACCATCCCCAGGAGACTTCCCAGCACTTCAGACATTGATGAGAAGGAAAACAGGGACTCTACTGCTCTGATACGTAGTGGCTCATACACCCGGCGACGCTGGGATGACGACCTGAAGAACAGCGAAGGAAGCGCCTCCACCAACCGACCCCCCAGCTACCAGCGCAGCACGTCCCACACGCTAGCACTAGGGCGGAGCAGCAGCACGCGGGACGTGCCAGCCAAGTCTTCGTCCACCTCCAGCTTGGACCCTAACACCTGTAATACTAAACCCTGGCAGCCACCCACCTCCCACTACCAGTCTTACAGCATTTACCGCAGCGGCTCTTTTGGCCGAAGACACGAGGACTTGAGTTCCTCGAGTACCTCCCCCCCCAcgaccaccaccacctcctcatCTGTTACCTCGCCCACAGGCCATCGCGGCCTGCTCTCCAGGTACTGGTCAGAGGAGAGTGcagagagggaaaaggagaaggagaaggagtcTGCTGCGGTCATCCCCACTATGAACACTGGCTCTACTACGACCACCACTTCGACCACTACCACCACCGCCATATCTACTACTACCACCACTGGCATTGGCTCTGAAAGACGCAGgtCATACCTGACACCAGTGCGAGACGAGGAGTCAGAGTCCCAGAGGAAAGCTCGCTCTAGACAGGCTCGGCAGTCAAGAAGATCCACCCAGGGTGTGACACTGACTGACCTGCAAGAGGCTGAAAAGACAATCGGCCGGAGTCGTCCCCAAAAGACccgagaggaggagaaggaggagaaagagaagcaggacAAGGAAAAGCagcaggaggagaagaaggagacgGAGACCAAGGAAGACGATTACCGATCGAAGTACCGCAGCTTCGAAGAGCGCTACCGGCCCTCGTCTTCCTCCTCTACCTCCGCCATTTCCACAGTCAGCACCGGCTCCATCCCGTACTCCAGCACCGCATTGTCCTCCAGTTCCAGCTCCCTCAACAGGCCTAACAGTCTGACGGGGATCACCTCCTCCTACAGCCGCTCCTCCAGAGACACGGAAAAAGAAATGGacaaaaaggaggaggagaaggaaggggaGGACAAGTCTCAGCCCCGCTCCATACGGGATCGCAGGCGGCCCCGCGAGAAGAGACGCTCCACTGGAGTCTCCTTCTGGACCCAGGATGGTGATGAAAATGACCCTGACCAGCAGTCCGACTCAGAGGAGGGCAGCACCAAGGGAGAGCCACAGAGTGACAGATTGTCCAGGAATGAGAGCAGCTCTTCATCCATAGATCGCAATGACACTCTTTTTAGCCGTGGCTATGGCGAGAGTCGGAGGACCTACTCGAGCCGACTGGATAGGGACGACACCACTGACTATAAGAAGCTTTACGAGCAGATCTTAGCTGAGAACGAGAAGTTGAAGGCCCAGTTACGTGACACGGACCTGGAGCTGGCAGACTTGAAGCTACAACTAGAGAAGGCCACACAGAGGCAGGAACGCTATGCCGACCGATCACAGCTTGAGATGGAGAAAAGGGAAAGAAGAGCTCTAGAAAGGAAGATTTCTGAGATGGAGGAGGAACTTAAGATGCTCCCAGACTTGAAAGCAGACAACCAGAGACTAAAGGACGAGAACGGAGCACTCATTCGAGTCATTAGCAAGCTTTCCAAGTAGAACAGCCCCCCCCCTCACCCCTCACCCCTCCCCCCCGCCACCCCATCTTCTGCACCCCGTAGTCCCCCACGGCAGTGACTAATGGAATTGCACATTTAGATATTAATTGCAACAGACATCAGAGACaagactccttttttttttttttttttttttttttttttttttttttctttatctcctCCCAGCTCTTTATCTCCCCCTTTTTGCTCCTCCACCACCAcagcatccatccatccatcaatctATCTACCCCCCTGCGCCACCTCTACGACTATTATCCACTTGATTGTGTGGTTGCTGTCCTGATAGAACCACTTGAGTTTACAGAGCAAACGGAAGGAAGGGTTGTGTGATGAGCATGTAAAAGCATTGTGGGCAGAGAAAGCCTGAAAACTATTTAACCAATAAGCCTTAGTTGTAcataaagagaaaaagaaaaaacacttacagcgatctctctct

Function

GO: NA

KEGG:

id description
K06270 PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638122.1 lncRNA downstream 786239 7525933 ~ 7556767 (-) True LOC120553157
TU307116 lncRNA downstream 786268 7552858 ~ 7556738 (-) False LOC120553157
TU307096 lncRNA downstream 830542 7509914 ~ 7512464 (-) True G226417
TU307055 lncRNA downstream 1021811 7319530 ~ 7321195 (-) True G226384
TU306995 lncRNA downstream 1072583 7269854 ~ 7270423 (-) False usp44
TU307399 lncRNA upstream 23879 8426737 ~ 8427606 (-) False G226658
TU307400 lncRNA upstream 23879 8426737 ~ 8429906 (-) True G226658
TU307402 lncRNA upstream 23879 8426737 ~ 8427606 (-) False G226658
TU307457 lncRNA upstream 406562 8809420 ~ 8814394 (-) True dram1
TU307503 lncRNA upstream 515633 8918491 ~ 8922944 (-) True G226711
XM_039792437.1 mRNA downstream 9985 8260324 ~ 8333021 (-) True pawr
XM_039792433.1 mRNA downstream 93137 8028460 ~ 8249869 (-) False syt1a
XM_039792435.1 mRNA downstream 117789 8024594 ~ 8225217 (-) True syt1a
XM_039792434.1 mRNA downstream 117789 8028460 ~ 8225217 (-) False syt1a
XM_039792436.1 mRNA downstream 117789 8028460 ~ 8225217 (-) False syt1a
XM_039792117.1 mRNA upstream 72772 8475630 ~ 8510314 (-) False lin7a
XM_039792118.1 mRNA upstream 72772 8475630 ~ 8510314 (-) True lin7a
XM_039791528.1 mRNA upstream 162384 8565242 ~ 8754830 (-) False ppfia2
XM_039791527.1 mRNA upstream 162384 8565242 ~ 8754830 (-) False ppfia2
XM_039791526.1 mRNA upstream 162384 8565242 ~ 8754830 (-) False ppfia2
TU307188 other downstream 451695 7888571 ~ 7891311 (-) True G226495
XR_005638120.1 other downstream 848699 7426600 ~ 7494307 (-) False LOC120553151
XR_005638119.1 other downstream 848699 7426600 ~ 7494307 (-) True LOC120553151
XR_005638121.1 other downstream 848703 7426600 ~ 7494303 (-) False LOC120553151
TU306891 other downstream 1253939 7086947 ~ 7089067 (-) False meig1
XR_005638147.1 other upstream 162384 8565242 ~ 8793910 (-) False ppfia2
XR_005638142.1 other upstream 162384 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other upstream 162384 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other upstream 162384 8565242 ~ 8754829 (-) True ppfia2
XR_005638145.1 other upstream 162384 8565242 ~ 8685938 (-) False ppfia2

Expression Profile