RNA id: XM_039791439.1


Basic Information

Item Value
RNA id XM_039791439.1
length 8256
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120553234
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27849737 ~ 27959398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGACCAAAGTGACCCTTATAGGACTCTGCAGACAGGAGGGACAACAAGGACGTAAGTGGAGAGGCAGGTCTGAGGATCCAAACACTGAGCCTGCAGCGGAAGGACAAAGAGTGGCGAGTGTGCCTTGCCTCACGGCTGCAGGCAGAGATGGCGTCCTGATGCCGGTGAATAAGCAGAAAAACAGagcagagggaggggagaaggaTGCGGGCAGCGGAAGATAAAAAGCTGCATCATTTAGAGCATCACATGGCAGAAGATGAGTTTCTCTGGTGATGGTGAGGATGACAACTCTTTAAGGATATTTGCGGGCGTTTCTTTTATATTGatacttaattttttttcttcttttttaaacatgagCTTTGAAGCTGCGGTGTGATTCTTTTGAGGGGAAGCGGTGGGGGTTTGTTGTCTACCTCAGCTATTTCTCCCTCCGCCGGGGCTCTCTGCTCATCCGACGCAGGGAGGAGAgggcagagggagggagagagcagcGATGGCTGCCGGTGGAGCAGGATGCGGGGACACGGTGGAGCAGTGCCGGGTCGAGGTGGAGCGTCTGACCCGGGagctggcggaggccaaccgcGAGAAGATCCGGGCGGCGGAGTGCGGGCTGGTGGTTCTGGAGGAGAACCAGAGCCTGAAGCAGCAGTACGCCGAGCTGGAGGCCGAGCAGGAGACGCTGAGGCTGGAGCTGGAGCAGCTGCAGGAGGCATTTGGCCATGCCTACTCCACCCAGCGTAAGGTGGCAGAAGATGGGGAGACCAATGAGGAGACGCTGCTGCAGGAGTCTGCCACCAAGGAAGCCTACTACATGGGCCGCCTCCTGGAGCTCCAGTCAGCTCTGAAGCACAGTCGGACAACCGCTTCCAACGCTCAGGCCGACAATGAACACCTGAGCACACTTCTGCAGGAGCTGAGGGAGCAGAGTAATGAGATGTTGGAGCTGCAGCGCAGCCGGATGCGAGAGGAGATCAGGGAGTACAAGTTTCGAGAGTCGCGGCTGCTTCAGGACTATactgagctggaggaggagaacaTCTCTCTGCAGAAGCTGGTGTCAACACTCAAACAGAATCAGGTGGAGTATGAAGGTCTGAAGCATGAGATTAAGGTCctagaggaggagacagagctCCTCAACAGCCAGTTACAAGATGCACTGCGTTTAAAGGACATCTCAGACGCCCAGCTGGAGGAGGCGCTGGAGTCATTGAAGAGTGAGCGTGAGCAGAAAAACCACCTGCGCAGGGAACTGGTCCACCACCTCAGCATGTGTGATGTGGCCTACACTGGTAGTGCCCACCTGACATTTACCTCAGCCCCACCCAGTGGCACCGCAACCCCAACAACTCTGCTCTCCCCAAATGCAGATGAACCAATGAGGTGTAACGGCCACCTCCAAGGTGGGACTGGAGCAGGGACGGCTGCAGAGTCGGTGCCCCGAGCTAATGGAGAGTGCCGAGGCCTGGGTTGGAAAGCTGAGGGGGCCGTGACATCGGACCTCTTCAACGAGATGAACCTGACAGAGATTCAGAAGCTTAAGCAGCAGCTGATGACGGTTGAACGTGAAAAAGTATCACTGATGACCAGTCTGCAGGAGTCCCAGACTCAGCTCCAACACACCCAAGGGGCCCTGAACGAGCAGCACGAGAAGGCCCTCCGCCTTAGCCAGAGAGTCACTGCCCTCCGCCGCCTGCACAGAAGGGCCCACCTCAACCAGGAAGCCCACGTCAGTGCCACTTCTCAGCTCAAACCTGAGGCCCTGATGGAGCTGGACAGAGATGATGAGGATActgaagaggaaggaggaacTGAGGGGTATAGGAGTGAGAAGTTAAACAAAAGTCAGGTATTTTCCTACCAGACGCCAGGTCTGGAGATCCTGCAGTGCAAGTACCGTGTGGCTGTGACAGAGGTGGTGGAGCTCAAGGCGGAGGTGAAAGCCCTCCGTGACAGACTGACTCAGTGTGTAGAGGGAGCGGCAGAGGAGAAGCCAAGGCGAAGCGGTCAGCTTcagaagctggagaggcaggTCACCTCATTGGAGAAGAGCTGCTGGGAAAGTCGGGAAAAGGTGTCTAGCCTGGAGTTGGAGTTGCAGGCAGCTCAGTCAGCAGCCAATGAGAGCCAGGGCGCATTGAACGCGGCTCAGGATGAGTTGGTGACGCTGAGCGAGGAGCTTGCCCAGCTCTACCACCATGTCTGTCTGTGCAACAATGAGACGCCCAACCGCGTTATGCTGGACTACTACAGACAAGGCAGAGGGCTCCGGGGCCTCAGTGCCTGTCTTAAAGCCATGTCTTCGGACAACAGCAAAGTTCTCCTCACACCACGCCTCGCCAGGCGGCTGGCTGCTGTCGCTTCCACAACCTTTACTCCTGGGGAGTCGCGGAGCCCCTCGCAGTCTCCATCCAAGGAGCCCTTATctggggaggtgggggggagagagaaggagggggacAAGGAGGGCCTCCAGGTGCCATCTGAGCAGAGCCTGCCACTCTGCACAACTCCGACCTGCTCACCCAGCATCAGTgcctcttcatcatcatcatcatcatcatcgcctGCCCTGGAGCCAGCTGGTGAGCTGCGACGGGAGCCCATGAACATCTACAACCTCAACGCCATCATCAGAGAACAGGTGAAGCACCTCCAGCGGGCGGTAGACAGGTCTCTGCAGCTGTCGAGACAGAGAGCTGCAGCCAGGGAACTGGCCCCTCTGATGGACAAGGACAAGGAGAGCTGCATGGAGGAGATCCTGAAGCTCAAGTCTCTGCTCAGCACCAAGAGAGAGCAGATAGCCACCCTCAGACTGGTACTCAGGGCTAACAAACAGACGGCAGAGGGGGCTCTGGCCAACCTGAAGAGTAAGTATGAGGCGGAGAAGTCCATGGTGACTGACACCATGATGAAGCTGAGGAACGAGCTCAAAGCCCTGAAGGAGGATGCCGCCACTTTCTCCTCTCTGCGGGCCTTGTTTGCCACCAGTGATAAATCCGCAgagcagttcccctcagctctacttTTGGGCAGCCAAAAAATGAATGCAGCTTTAGTTGTGATCTCAGAGCTTCTTCAGTTATATTCAAGAAGACACAGGTGTGACGAGTACATTACCCAGCTGGATGAGATGCAGAGGCAGCTGGCTGCAGCCGAAGATGAGAAGAAGACTCTGAATTCCCTCCTGCGGATGGCCATCCAGCAGAAATTGGCCCTCACCCAGCGCCTGGAGGATTTGGCTTTCGATCAAGAGCAGACCCACCGCACCCGCGGGGGCAGGCTAAACCGCGTGAAGACCAGCACTCCCAAAGTAAGTCACTCGGCCTCAGCTTCGGCCTCCAATATAGCCCATGGCTCTTCAGCTTTGGCCCCTGTCAGCCTCCCCCTTTCCAGCCTTCCTAGTCCTACGTCAATTCTTCCTGATGATCCCTCTGTGCCCCTTAGCCTATCTGTGGTCAGTGCAGCTTTGGCCTCAGCTCTTACCTCCCCTACGTCACACATACCCCCTCGCAGTCCGTCATCACCAGCGGTTGCCTCATTGGCTGGCCCTTTGGCGCCAGAGAGCCCTCCATGTCTGGAggccccctcctctccctcagCGCGGACCTCGCCCTCAGCCACTCTGAATCTGGCTCGCTCCCAGTGGACCCTGGGGGTGCGGACGGTTGTGGTTGACTCCCACAGTTTCAGTGTCAACATCTCCCCCACTCTGCCTCATAGCTCGGGCCTCTCCAGGCACTACACCCCAGACTCTCAAACCTCTCCCCCATCCACCACCAACACCAGGCCCACCCAACCAGGATCTGCCCCATCCTCTCCCTACCGGTCCCCTATTCTGGGGCTCAGGCGCTCCACATGGAGCCCCTCACCCCGAACTCGGCCCTTGTCTAGCCTGATGCGCTCTTCTGTCCTTCCCTCCCCTTACTCCACCTCCCACTCCCCTTCTTCCTCCCacagctattcctctgcctacTACAGCTCCTCTCCTGCTTTTACCCCCTCTAGCTCCTACCTCACCTCTGGTACTTCTGGTACTTCTTACAGCCACTCTATCAACTACACGCCCCTCTACCCCAGATACTACAGTTCATACCGGCCACGGCACTGACGCCTTACTATAAATTctttactataacttttttgaaGGCTTTTCCACCAGGCTCCTTATTGACATTAAAACTGCAACTCCCATCAGCCTTCTCTTTTTGTCATCTTAGAGAGTGGGGGCtcacagagaggaggacagagtgGTTTCCTGTTTCCCTGTGCCTAAGCTTTGGCCAATGGGTTCTAAATGTTCGGTGACTTTGCTCAGGGATTTGACATAAGGAGCACAAGCGGCCCCACTTTCCTTCTATTCTGAGACTGCTGATTGGTCCACAGGAGGATGCTAATAGAGACTTTTTAACAAAGGTTTTTAGCATTTAGGTTCTTCAGGTTGAGACCATATTTGCATGAAGTGATTAAAACACAGAGACATTCAGACATTGACTGGACATCTTGCAGACAATTTCATAGGTATGAATGAGGGCCATGATACATTAATTACCATCCTCTATATTCAATATAATATCCACTCTGTAGTGAGTCTgtatacacaaaaacactgtaCACCACATATTTTCAGTGCAAGCATTCTCCTTTTGTTTGTTCAGTATGATTCAAGCAAATGTGGTTGTAAGTGTCATCTGAACATGTCTGAAGACAAAAGTGTTTATACCACTTCCAGATGGCCACACACAAAGCTCTGTTGTAGACAGCGGGGGCACGATGATCTCTCCTGAAAGTCATTTCTGGTATTGCACTCAGTGGCAGTAGTAGCTTTGTGAAGAATAAAAAAGAGCCTGCTATTTTTTACACCTATGCCACCTGGCCAATTGTTTTGGCCAAGTTGCCATGCTTGCTAAATTGTTGTTGAAAAGTTAGGAAAATTGTCAGACGTAGACCCCTGAATTCCAACATCGGGAGGGTGTTTGAGAGGCTGTATGTCCTTGCAACAAGACCTTTGTTTGAAGCATACTGACCTTTAGTGTTTCAGCTTTGATCTCACTCTATAatctctccctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtatgaTGAGACAGTTGTGGACAAGGAGTGATGGACTACTCATTGATACCCACAGTATATAATCTCTCATGGTGGGCACCGCTTTCCAAAAGATATTCATAGGACAGCTCAATGAGTATTCTTCATTTCTTGTCCAAGGTTGTTGCCCTCATCAGCTCAACCTTCAGCAATTGTTGTCTATCTCTAGCACCAACCAGTGGTTTGTTCTCATATAGCAATGTACTCTGCTATGCATGTTCACATTTGGATGCTCTTATACTGTAAACTTCCTCGCCTTCCATATAAAAAATGGATCTAAGAGAGGTGCAGGCTGTATAAAGGTCGTTGCAGGGATGAACTtatgaggaggaaggagaacaCTCAAACATGGCATATTACCAGTGTAGGATCAGCTGAATATCATAGTGTAGTCATTTTACAAGGAAGCAATACGACTTGGAGATCTTGGTGATCACATCTGTGATGTGTCTCAATAGTCTGAAGTTTCCTTCTCCTCATTTCTTATTTGAACTTTCTTTAAGCATATCAACTATTAAAAAATCACTTCTAAAGTAACTATtacattcaacaacaaaaaacctgAAAAATTAAGAGGAATTCCTCAACAAGTTGAGTTTCTCCCACATATAACCCATTATTTACAACTGACTTGCTTTTGAGAAAGATGATAATCCCCACAAGCTACACTGGTTAGGATTAGAAATATGAACTTTTGTAGGAGGGTATAACTTGGCATGGGCCGGTATATgattctgacggtatgataaccttcagcaaaaatatcatgGTTTCACGGTATTGCagtattgcaattacagctttaaaatgtattatatttttaaatgtctgggtaaaataaaaaatgaaaattacattgaacatattgtattttatttttaaacacactgcacactggcagggagagacatttctaaactgcacttcCTGTCCTTATGTCCACTCATAAAAAACAGCTTATACCTTAGGAACGGTATGACAGAAAATGTTCCTTGACATGAAACCTTGACTTTTTCAATGGATACCTTTTATAGACAGAGACAGTATACCTTGAAAACCGTTACCAGCCCATGCCTAGGTATAACAATCATTTGCAATTTGCATCTTCTGGCCTGGTATCACTTTAACCAGGTTAAATGAAAGTCCCATTTCTATGCAGAACATAAGATATAAACCCAGATTGCTCTCTCACTGTTACTTTTAGCTTACACAAGATGATCACTACAGAGGGACACTGATAATTTTGGTTGAGTAAAATTAGTTTAAGTGTAtatgttttctcaaaatgcaATTTTGTGAGTAACCATTAACTGAAGTtaggcatttatttaaaaaacatgtgATTCAAGAAAGTACTACCACATGACCACATAACTTAGTATCTTTATATCCAAACACTGACAGCAAGTGATTCAAGACTATTCTATCTAACTATAATGGCCAACTTTAGGGTTATACTCGTAAACCCACAATGTAGCACCCTTTTGTGCCTCTGAGGCCATCTGCAGAGGTCCGTCCAGTGACACAGTATGAATTCTGACACAGAATGTATTCAGGTTATGTTTAGTCTTGTTCACGGCATTGCATCAAACTCAGGGAAGGTGACATACCTAATTCAACCTATAATTAGTCAACAACCATCATTCATGAGTCAACAACCATCCAGAATGACTATTAACATTATGATATCATTTTGACTTAGAGAATAGATCTCCCAAATTAGATTGAAGGTTTGAGTTAATTGTAGTCAAGTTAAAGGAAACATGGATGTTTTACATCTTACCCAGAGTCACACAAGAAGATTTATATCAATGTCATCTCGGTGTCTAGTACAGAGATATGGGTTTGTATATCATGTTATTCCAATTTGGTAATGTTGCACAGTGTTTCACTTTTGTACTGGATCAAATCCAACCAGTTTATAACTTGTTTCAATTTCCTGAATTTGAGTTAATATTGGATTTAATTTAGATGCAACTGCCAGTGATGGTGGCTTTGCAGCCATTTTGCAACTGCTCAGTTTGTTGACCCTTTTTAGTTATTTCTGCCAAGTGGGAGATATAGTAGCTGTTAAAAATTCCTGATATCTTTAACTTTGAGGAATAAACCTGGAAATCTGCCATGATGGTTTTTCCCACTTTGTTGCCCGTCATTGTTGAATGAAACAGATCAGGTCcataaaactgaaaacacaaccAACCAGGAACTGTTTTGTTTACCCATAAGTATGTGGTTAGCTACCAATTCCAACTCTGTACTGGATTTGTTGATCTTTCTGTTTGACCTGAGTTGACAGCAAACTCATTTATTAAAAGGTTTTTAATGTGCTTTTAACTGTTAGCAAATAACATATGTGGGATAAGAGTTCAGCACACATGACACCGTattacctgtgtctgtgtgtgccttaCAAAACAGATTCAACAGCACCCACAAAGTGTAGCCTGATAACAAATGCCTGTCTGAAAACAAACCATTTTTTATTGTGCTtcctttatttttcatttccaaACCTGCACCTCAGGTTAAATTGctggttttgtgtgtatttgtttttggtttAGATTGTTTTCTGTGGGGATGGATTATGACTCATAATACTTCTAACTGTCAGTAGATATTTTTTGTCTGGGTAATGTCCAGAATACAGACTTAGAAAATACCCCTCTGCAATGTAcacattctttttttcctttttatcatCAGAACCTTTAATCACCACTttacttctttcttttctgaTCTATTAATTCAGACTATCACAGTAATCTATTGACTATTGACTCGTGTTtaacactgtaaacacacacattttttaataTGCAACATGGGGCAAAGACTCATTTGACAGGCACCTTTTTTCCTGATTTCTGATTGGCTCCTTTGAAAGTAGTGTTTAGCATAATAGGCCCACATCttgctttcatttttttctacCTCAGCAATCAGATGTCAATCTGATTTTAATGAGCAAATGGCatttgagaaggagtcctctttacattttcagtATGCTACTGCTTGATCAATGAtttatgaatacattgtgaaaGAAATATGACcacaaaatattttaataaaattcACATACCAACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313061 lncRNA upstream 49705 27779356 ~ 27800032 (+) False G230881
TU313060 lncRNA upstream 49705 27798431 ~ 27800032 (+) True G230881
TU313057 lncRNA upstream 70659 27762876 ~ 27779078 (+) True G230879
TU313056 lncRNA upstream 89622 27759598 ~ 27760115 (+) True G230878
TU313044 lncRNA upstream 111538 27656020 ~ 27738199 (+) True G230866
TU313083 lncRNA downstream 8662 27968060 ~ 27971245 (+) True G230900
TU313090 lncRNA downstream 12537 27971935 ~ 27973192 (+) True G230907
TU313084 lncRNA downstream 13903 27973301 ~ 27974585 (+) True G230901
TU313091 lncRNA downstream 15453 27974851 ~ 27976209 (+) True G230908
TU313085 lncRNA downstream 17056 27976454 ~ 27976871 (+) True G230902
XM_039791033.1 mRNA upstream 153020 27695624 ~ 27696717 (+) True kiss2
XM_039791032.1 mRNA upstream 198655 27648003 ~ 27651082 (+) True spx
XM_039791029.1 mRNA upstream 204858 27637088 ~ 27644879 (+) False golt1ba
XM_039791037.1 mRNA downstream 57445 28016843 ~ 28023618 (+) True LOC120552999
XM_039792180.1 mRNA downstream 190334 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA downstream 190335 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA downstream 190335 28149733 ~ 28293546 (+) False LOC120553593
XM_039792477.1 mRNA downstream 657857 28617255 ~ 28630012 (+) True LOC120553776
TU313012 other upstream 246035 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 777185 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 1468628 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 1468628 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 1803056 26038287 ~ 26046681 (+) False arhgef39
TU313169 other downstream 98333 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 511408 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 511708 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 541836 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 621089 28580487 ~ 28580602 (+) True LOC120553840

Expression Profile